data_8TFX
#
_model_server_result.job_id            TRsRE7LFfGdtLRqQexmCqA 
_model_server_result.datetime_utc      '2024-11-14 17:40:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tfx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":205}' 
#
_entry.id    8TFX 
#
_exptl.entry_id    8TFX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TFX 
_cell.length_a            38.554 
_cell.length_b            44.626 
_cell.length_c            124.397 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TFX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 6 A SER 6 1_555 Q K K . A K 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? 
metalc ? metalc2 A O LEU 13 A LEU 13 1_555 L K K . A K 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc3 A O GLY 28 A GLY 28 1_555 L K K . A K 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc4 A OE1 GLU 34 A GLU 34 1_555 P K K . A K 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? 
metalc ? metalc5 A OD2 ASP 58 A ASP 58 1_555 Q K K . A K 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc6 A OH TYR 78 A TYR 78 1_555 L K K . A K 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.467 ? 
metalc ? metalc7 A OE2 GLU 86 A GLU 86 1_555 M K K . A K 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc8 A O ASP 87 A ASP 87 1_555 M K K . A K 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? 
metalc ? metalc9 A O ILE 155 A ILE 155 1_555 M K K . A K 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.361 ? 
metalc ? metalc10 N K K . A K 213 1_555 R O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc11 O K K . A K 214 1_555 R O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? 
metalc ? metalc12 O K K . A K 214 1_555 R O HOH . A HOH 402 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc13 P K K . A K 215 1_555 R O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.402 ? 
metalc ? metalc14 P K K . A K 215 1_555 R O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.245 ? 
metalc ? metalc15 Q K K . A K 216 1_555 R O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc16 Q K K . A K 216 1_555 R O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 127 n n 
C1 C2 EDO sing 128 n n 
C1 H11 EDO sing 129 n n 
C1 H12 EDO sing 130 n n 
O1 HO1 EDO sing 131 n n 
C2 O2 EDO sing 132 n n 
C2 H21 EDO sing 133 n n 
C2 H22 EDO sing 134 n n 
O2 HO2 EDO sing 135 n n 
#
_atom_sites.entry_id                     8TFX 
_atom_sites.fract_transf_matrix[1][1]    0.025938 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A2P A 1 201 201 A2P A2P . 
C 3 EDO A 1 202 202 EDO EDO . 
D 3 EDO A 1 203 203 EDO EDO . 
E 3 EDO A 1 204 204 EDO EDO . 
F 3 EDO A 1 205 205 EDO EDO . 
G 3 EDO A 1 206 206 EDO EDO . 
H 4 GOL A 1 207 207 GOL GOL . 
I 3 EDO A 1 208 208 EDO EDO . 
J 5 CL A 1 209 2 CL CL . 
K 5 CL A 1 210 3 CL CL . 
L 6 K A 1 211 1 K K . 
M 6 K A 1 212 2 K K . 
N 6 K A 1 213 3 K K . 
O 6 K A 1 214 4 K K . 
P 6 K A 1 215 5 K K . 
Q 6 K A 1 216 6 K K . 
R 7 HOH A 1 301 91 HOH HOH . 
R 7 HOH A 2 302 141 HOH HOH . 
R 7 HOH A 3 303 100 HOH HOH . 
R 7 HOH A 4 304 58 HOH HOH . 
R 7 HOH A 5 305 104 HOH HOH . 
R 7 HOH A 6 306 86 HOH HOH . 
R 7 HOH A 7 307 137 HOH HOH . 
R 7 HOH A 8 308 12 HOH HOH . 
R 7 HOH A 9 309 34 HOH HOH . 
R 7 HOH A 10 310 63 HOH HOH . 
R 7 HOH A 11 311 7 HOH HOH . 
R 7 HOH A 12 312 56 HOH HOH . 
R 7 HOH A 13 313 122 HOH HOH . 
R 7 HOH A 14 314 88 HOH HOH . 
R 7 HOH A 15 315 70 HOH HOH . 
R 7 HOH A 16 316 111 HOH HOH . 
R 7 HOH A 17 317 87 HOH HOH . 
R 7 HOH A 18 318 49 HOH HOH . 
R 7 HOH A 19 319 64 HOH HOH . 
R 7 HOH A 20 320 6 HOH HOH . 
R 7 HOH A 21 321 23 HOH HOH . 
R 7 HOH A 22 322 67 HOH HOH . 
R 7 HOH A 23 323 124 HOH HOH . 
R 7 HOH A 24 324 42 HOH HOH . 
R 7 HOH A 25 325 107 HOH HOH . 
R 7 HOH A 26 326 60 HOH HOH . 
R 7 HOH A 27 327 99 HOH HOH . 
R 7 HOH A 28 328 80 HOH HOH . 
R 7 HOH A 29 329 20 HOH HOH . 
R 7 HOH A 30 330 90 HOH HOH . 
R 7 HOH A 31 331 44 HOH HOH . 
R 7 HOH A 32 332 74 HOH HOH . 
R 7 HOH A 33 333 26 HOH HOH . 
R 7 HOH A 34 334 35 HOH HOH . 
R 7 HOH A 35 335 48 HOH HOH . 
R 7 HOH A 36 336 11 HOH HOH . 
R 7 HOH A 37 337 66 HOH HOH . 
R 7 HOH A 38 338 9 HOH HOH . 
R 7 HOH A 39 339 72 HOH HOH . 
R 7 HOH A 40 340 13 HOH HOH . 
R 7 HOH A 41 341 84 HOH HOH . 
R 7 HOH A 42 342 57 HOH HOH . 
R 7 HOH A 43 343 119 HOH HOH . 
R 7 HOH A 44 344 76 HOH HOH . 
R 7 HOH A 45 345 19 HOH HOH . 
R 7 HOH A 46 346 113 HOH HOH . 
R 7 HOH A 47 347 46 HOH HOH . 
R 7 HOH A 48 348 3 HOH HOH . 
R 7 HOH A 49 349 16 HOH HOH . 
R 7 HOH A 50 350 52 HOH HOH . 
R 7 HOH A 51 351 106 HOH HOH . 
R 7 HOH A 52 352 85 HOH HOH . 
R 7 HOH A 53 353 89 HOH HOH . 
R 7 HOH A 54 354 45 HOH HOH . 
R 7 HOH A 55 355 101 HOH HOH . 
R 7 HOH A 56 356 47 HOH HOH . 
R 7 HOH A 57 357 50 HOH HOH . 
R 7 HOH A 58 358 118 HOH HOH . 
R 7 HOH A 59 359 37 HOH HOH . 
R 7 HOH A 60 360 18 HOH HOH . 
R 7 HOH A 61 361 1 HOH HOH . 
R 7 HOH A 62 362 21 HOH HOH . 
R 7 HOH A 63 363 8 HOH HOH . 
R 7 HOH A 64 364 109 HOH HOH . 
R 7 HOH A 65 365 71 HOH HOH . 
R 7 HOH A 66 366 29 HOH HOH . 
R 7 HOH A 67 367 36 HOH HOH . 
R 7 HOH A 68 368 75 HOH HOH . 
R 7 HOH A 69 369 5 HOH HOH . 
R 7 HOH A 70 370 139 HOH HOH . 
R 7 HOH A 71 371 54 HOH HOH . 
R 7 HOH A 72 372 135 HOH HOH . 
R 7 HOH A 73 373 102 HOH HOH . 
R 7 HOH A 74 374 14 HOH HOH . 
R 7 HOH A 75 375 15 HOH HOH . 
R 7 HOH A 76 376 146 HOH HOH . 
R 7 HOH A 77 377 55 HOH HOH . 
R 7 HOH A 78 378 59 HOH HOH . 
R 7 HOH A 79 379 28 HOH HOH . 
R 7 HOH A 80 380 120 HOH HOH . 
R 7 HOH A 81 381 105 HOH HOH . 
R 7 HOH A 82 382 65 HOH HOH . 
R 7 HOH A 83 383 22 HOH HOH . 
R 7 HOH A 84 384 96 HOH HOH . 
R 7 HOH A 85 385 103 HOH HOH . 
R 7 HOH A 86 386 125 HOH HOH . 
R 7 HOH A 87 387 117 HOH HOH . 
R 7 HOH A 88 388 136 HOH HOH . 
R 7 HOH A 89 389 62 HOH HOH . 
R 7 HOH A 90 390 128 HOH HOH . 
R 7 HOH A 91 391 149 HOH HOH . 
R 7 HOH A 92 392 114 HOH HOH . 
R 7 HOH A 93 393 112 HOH HOH . 
R 7 HOH A 94 394 121 HOH HOH . 
R 7 HOH A 95 395 133 HOH HOH . 
R 7 HOH A 96 396 126 HOH HOH . 
R 7 HOH A 97 397 27 HOH HOH . 
R 7 HOH A 98 398 140 HOH HOH . 
R 7 HOH A 99 399 97 HOH HOH . 
R 7 HOH A 100 400 134 HOH HOH . 
R 7 HOH A 101 401 95 HOH HOH . 
R 7 HOH A 102 402 127 HOH HOH . 
R 7 HOH A 103 403 17 HOH HOH . 
R 7 HOH A 104 404 132 HOH HOH . 
R 7 HOH A 105 405 131 HOH HOH . 
R 7 HOH A 106 406 123 HOH HOH . 
R 7 HOH A 107 407 61 HOH HOH . 
R 7 HOH A 108 408 138 HOH HOH . 
R 7 HOH A 109 409 130 HOH HOH . 
R 7 HOH A 110 410 116 HOH HOH . 
R 7 HOH A 111 411 98 HOH HOH . 
R 7 HOH A 112 412 115 HOH HOH . 
R 7 HOH A 113 413 108 HOH HOH . 
R 7 HOH A 114 414 129 HOH HOH . 
R 7 HOH A 115 415 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 3 -3.356 23.248 48.144 0.85 37.97 ? C1 EDO 205 A 1 
HETATM 2 O O1 EDO . . . F 3 -2.674 24.502 47.975 0.85 37.67 ? O1 EDO 205 A 1 
HETATM 3 C C2 EDO . . . F 3 -2.625 22.453 49.224 0.85 32.79 ? C2 EDO 205 A 1 
HETATM 4 O O2 EDO . . . F 3 -3.189 22.787 50.5 0.85 41.34 ? O2 EDO 205 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           4 
#