data_8TFY # _model_server_result.job_id E-7f0cjumgXLeQWiY4-QDw _model_server_result.datetime_utc '2025-06-30 05:12:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8TFY # _exptl.entry_id 8TFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TFY _cell.length_a 38.671 _cell.length_b 44.531 _cell.length_c 124.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 8TFY _atom_sites.fract_transf_matrix[1][1] 0.025859 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 201 NAP NAP . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 4 HOH A 1 301 81 HOH HOH . E 4 HOH A 2 302 115 HOH HOH . E 4 HOH A 3 303 103 HOH HOH . E 4 HOH A 4 304 70 HOH HOH . E 4 HOH A 5 305 29 HOH HOH . E 4 HOH A 6 306 86 HOH HOH . E 4 HOH A 7 307 101 HOH HOH . E 4 HOH A 8 308 1 HOH HOH . E 4 HOH A 9 309 50 HOH HOH . E 4 HOH A 10 310 5 HOH HOH . E 4 HOH A 11 311 54 HOH HOH . E 4 HOH A 12 312 33 HOH HOH . E 4 HOH A 13 313 65 HOH HOH . E 4 HOH A 14 314 20 HOH HOH . E 4 HOH A 15 315 62 HOH HOH . E 4 HOH A 16 316 7 HOH HOH . E 4 HOH A 17 317 30 HOH HOH . E 4 HOH A 18 318 113 HOH HOH . E 4 HOH A 19 319 27 HOH HOH . E 4 HOH A 20 320 28 HOH HOH . E 4 HOH A 21 321 56 HOH HOH . E 4 HOH A 22 322 44 HOH HOH . E 4 HOH A 23 323 110 HOH HOH . E 4 HOH A 24 324 51 HOH HOH . E 4 HOH A 25 325 49 HOH HOH . E 4 HOH A 26 326 82 HOH HOH . E 4 HOH A 27 327 11 HOH HOH . E 4 HOH A 28 328 59 HOH HOH . E 4 HOH A 29 329 78 HOH HOH . E 4 HOH A 30 330 36 HOH HOH . E 4 HOH A 31 331 14 HOH HOH . E 4 HOH A 32 332 16 HOH HOH . E 4 HOH A 33 333 76 HOH HOH . E 4 HOH A 34 334 13 HOH HOH . E 4 HOH A 35 335 67 HOH HOH . E 4 HOH A 36 336 42 HOH HOH . E 4 HOH A 37 337 68 HOH HOH . E 4 HOH A 38 338 37 HOH HOH . E 4 HOH A 39 339 80 HOH HOH . E 4 HOH A 40 340 63 HOH HOH . E 4 HOH A 41 341 4 HOH HOH . E 4 HOH A 42 342 43 HOH HOH . E 4 HOH A 43 343 39 HOH HOH . E 4 HOH A 44 344 6 HOH HOH . E 4 HOH A 45 345 90 HOH HOH . E 4 HOH A 46 346 21 HOH HOH . E 4 HOH A 47 347 24 HOH HOH . E 4 HOH A 48 348 53 HOH HOH . E 4 HOH A 49 349 93 HOH HOH . E 4 HOH A 50 350 46 HOH HOH . E 4 HOH A 51 351 94 HOH HOH . E 4 HOH A 52 352 9 HOH HOH . E 4 HOH A 53 353 10 HOH HOH . E 4 HOH A 54 354 111 HOH HOH . E 4 HOH A 55 355 106 HOH HOH . E 4 HOH A 56 356 97 HOH HOH . E 4 HOH A 57 357 15 HOH HOH . E 4 HOH A 58 358 52 HOH HOH . E 4 HOH A 59 359 19 HOH HOH . E 4 HOH A 60 360 98 HOH HOH . E 4 HOH A 61 361 18 HOH HOH . E 4 HOH A 62 362 34 HOH HOH . E 4 HOH A 63 363 58 HOH HOH . E 4 HOH A 64 364 12 HOH HOH . E 4 HOH A 65 365 64 HOH HOH . E 4 HOH A 66 366 102 HOH HOH . E 4 HOH A 67 367 69 HOH HOH . E 4 HOH A 68 368 35 HOH HOH . E 4 HOH A 69 369 66 HOH HOH . E 4 HOH A 70 370 41 HOH HOH . E 4 HOH A 71 371 26 HOH HOH . E 4 HOH A 72 372 61 HOH HOH . E 4 HOH A 73 373 105 HOH HOH . E 4 HOH A 74 374 2 HOH HOH . E 4 HOH A 75 375 8 HOH HOH . E 4 HOH A 76 376 87 HOH HOH . E 4 HOH A 77 377 3 HOH HOH . E 4 HOH A 78 378 96 HOH HOH . E 4 HOH A 79 379 71 HOH HOH . E 4 HOH A 80 380 77 HOH HOH . E 4 HOH A 81 381 47 HOH HOH . E 4 HOH A 82 382 104 HOH HOH . E 4 HOH A 83 383 88 HOH HOH . E 4 HOH A 84 384 25 HOH HOH . E 4 HOH A 85 385 92 HOH HOH . E 4 HOH A 86 386 45 HOH HOH . E 4 HOH A 87 387 85 HOH HOH . E 4 HOH A 88 388 84 HOH HOH . E 4 HOH A 89 389 83 HOH HOH . E 4 HOH A 90 390 60 HOH HOH . E 4 HOH A 91 391 38 HOH HOH . E 4 HOH A 92 392 108 HOH HOH . E 4 HOH A 93 393 79 HOH HOH . E 4 HOH A 94 394 114 HOH HOH . E 4 HOH A 95 395 107 HOH HOH . E 4 HOH A 96 396 22 HOH HOH . E 4 HOH A 97 397 57 HOH HOH . E 4 HOH A 98 398 116 HOH HOH . E 4 HOH A 99 399 89 HOH HOH . E 4 HOH A 100 400 23 HOH HOH . E 4 HOH A 101 401 40 HOH HOH . E 4 HOH A 102 402 112 HOH HOH . E 4 HOH A 103 403 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -5.876 8.815 41.583 1 48.33 ? PA NAP 201 A 1 HETATM 2 O O1A NAP . . . B 2 -6.022 8.946 40.102 1 53.21 ? O1A NAP 201 A 1 HETATM 3 O O2A NAP . . . B 2 -5.825 7.447 42.183 1 45.06 ? O2A NAP 201 A 1 HETATM 4 O O5B NAP . . . B 2 -4.57 9.61 42.04 1 35.78 ? O5B NAP 201 A 1 HETATM 5 C C5B NAP . . . B 2 -4.356 10.983 41.653 1 29.83 ? C5B NAP 201 A 1 HETATM 6 C C4B NAP . . . B 2 -3.09 11.452 42.32 1 25.97 ? C4B NAP 201 A 1 HETATM 7 O O4B NAP . . . B 2 -3.307 11.363 43.755 1 24.6 ? O4B NAP 201 A 1 HETATM 8 C C3B NAP . . . B 2 -1.831 10.613 42.033 1 23.52 ? C3B NAP 201 A 1 HETATM 9 O O3B NAP . . . B 2 -0.678 11.446 41.993 1 24.59 ? O3B NAP 201 A 1 HETATM 10 C C2B NAP . . . B 2 -1.789 9.671 43.233 1 22.17 ? C2B NAP 201 A 1 HETATM 11 O O2B NAP . . . B 2 -0.486 9.206 43.563 1 21.47 ? O2B NAP 201 A 1 HETATM 12 C C1B NAP . . . B 2 -2.286 10.59 44.339 1 20.58 ? C1B NAP 201 A 1 HETATM 13 N N9A NAP . . . B 2 -2.821 9.84 45.471 1 20.03 ? N9A NAP 201 A 1 HETATM 14 C C8A NAP . . . B 2 -3.9 8.991 45.471 1 21.97 ? C8A NAP 201 A 1 HETATM 15 N N7A NAP . . . B 2 -4.127 8.437 46.635 1 21.35 ? N7A NAP 201 A 1 HETATM 16 C C5A NAP . . . B 2 -3.126 8.945 47.453 1 18.22 ? C5A NAP 201 A 1 HETATM 17 C C6A NAP . . . B 2 -2.814 8.738 48.811 1 19.07 ? C6A NAP 201 A 1 HETATM 18 N N6A NAP . . . B 2 -3.5 7.932 49.619 1 22.83 ? N6A NAP 201 A 1 HETATM 19 N N1A NAP . . . B 2 -1.748 9.409 49.311 1 17.18 ? N1A NAP 201 A 1 HETATM 20 C C2A NAP . . . B 2 -1.047 10.214 48.505 1 16.48 ? C2A NAP 201 A 1 HETATM 21 N N3A NAP . . . B 2 -1.25 10.483 47.217 1 16.61 ? N3A NAP 201 A 1 HETATM 22 C C4A NAP . . . B 2 -2.317 9.813 46.748 1 17.57 ? C4A NAP 201 A 1 HETATM 23 O O3 NAP . . . B 2 -7.063 9.644 42.281 1 56.53 ? O3 NAP 201 A 1 HETATM 24 P PN NAP . . . B 2 -7.737 9.7 43.737 1 62.86 ? PN NAP 201 A 1 HETATM 25 O O1N NAP . . . B 2 -7.747 8.328 44.33 1 65.4 ? O1N NAP 201 A 1 HETATM 26 O O2N NAP . . . B 2 -9.05 10.397 43.595 1 65.12 ? O2N NAP 201 A 1 HETATM 27 O O5D NAP . . . B 2 -6.731 10.631 44.57 1 62.43 ? O5D NAP 201 A 1 HETATM 28 P P2B NAP . . . B 2 -0.113 7.639 43.405 1 21.91 ? P2B NAP 201 A 1 HETATM 29 O O1X NAP . . . B 2 1.044 7.454 44.375 1 19.81 ? O1X NAP 201 A 1 HETATM 30 O O2X NAP . . . B 2 -1.32 6.822 43.794 1 20.94 ? O2X NAP 201 A 1 HETATM 31 O O3X NAP . . . B 2 0.32 7.406 41.968 1 25.58 ? O3X NAP 201 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #