data_8TFZ # _model_server_result.job_id gFI7ikCPZWinmtaY9_gDeA _model_server_result.datetime_utc '2024-11-16 03:51:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8TFZ # _exptl.entry_id 8TFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.48 _cell.angle_gamma 90 _cell.entry_id 8TFZ _cell.length_a 55.759 _cell.length_b 44.585 _cell.length_c 72.142 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 8TFZ _atom_sites.fract_transf_matrix[1][1] 0.017934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004299 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 201 201 NAD NAD . D 3 GOL A 1 202 202 GOL GOL . E 4 CL A 1 203 1 CL CL . F 4 CL A 1 204 3 CL CL . G 2 NAD B 1 201 201 NAD NAD . H 3 GOL B 1 202 202 GOL GOL . I 4 CL B 1 203 4 CL CL . J 5 HOH A 1 301 113 HOH HOH . J 5 HOH A 2 302 67 HOH HOH . J 5 HOH A 3 303 35 HOH HOH . J 5 HOH A 4 304 32 HOH HOH . J 5 HOH A 5 305 13 HOH HOH . J 5 HOH A 6 306 27 HOH HOH . J 5 HOH A 7 307 98 HOH HOH . J 5 HOH A 8 308 38 HOH HOH . J 5 HOH A 9 309 43 HOH HOH . J 5 HOH A 10 310 5 HOH HOH . J 5 HOH A 11 311 52 HOH HOH . J 5 HOH A 12 312 36 HOH HOH . J 5 HOH A 13 313 48 HOH HOH . J 5 HOH A 14 314 99 HOH HOH . J 5 HOH A 15 315 130 HOH HOH . J 5 HOH A 16 316 105 HOH HOH . J 5 HOH A 17 317 20 HOH HOH . J 5 HOH A 18 318 18 HOH HOH . J 5 HOH A 19 319 68 HOH HOH . J 5 HOH A 20 320 12 HOH HOH . J 5 HOH A 21 321 73 HOH HOH . J 5 HOH A 22 322 6 HOH HOH . J 5 HOH A 23 323 66 HOH HOH . J 5 HOH A 24 324 82 HOH HOH . J 5 HOH A 25 325 24 HOH HOH . J 5 HOH A 26 326 7 HOH HOH . J 5 HOH A 27 327 34 HOH HOH . J 5 HOH A 28 328 131 HOH HOH . J 5 HOH A 29 329 80 HOH HOH . J 5 HOH A 30 330 108 HOH HOH . J 5 HOH A 31 331 22 HOH HOH . J 5 HOH A 32 332 65 HOH HOH . J 5 HOH A 33 333 61 HOH HOH . J 5 HOH A 34 334 23 HOH HOH . J 5 HOH A 35 335 94 HOH HOH . J 5 HOH A 36 336 69 HOH HOH . J 5 HOH A 37 337 122 HOH HOH . J 5 HOH A 38 338 72 HOH HOH . J 5 HOH A 39 339 60 HOH HOH . J 5 HOH A 40 340 87 HOH HOH . J 5 HOH A 41 341 118 HOH HOH . J 5 HOH A 42 342 58 HOH HOH . J 5 HOH A 43 343 133 HOH HOH . J 5 HOH A 44 344 132 HOH HOH . J 5 HOH A 45 345 15 HOH HOH . J 5 HOH A 46 346 64 HOH HOH . J 5 HOH A 47 347 25 HOH HOH . J 5 HOH A 48 348 41 HOH HOH . J 5 HOH A 49 349 46 HOH HOH . J 5 HOH A 50 350 101 HOH HOH . J 5 HOH A 51 351 134 HOH HOH . J 5 HOH A 52 352 51 HOH HOH . J 5 HOH A 53 353 111 HOH HOH . J 5 HOH A 54 354 33 HOH HOH . K 5 HOH B 1 301 137 HOH HOH . K 5 HOH B 2 302 54 HOH HOH . K 5 HOH B 3 303 4 HOH HOH . K 5 HOH B 4 304 93 HOH HOH . K 5 HOH B 5 305 90 HOH HOH . K 5 HOH B 6 306 53 HOH HOH . K 5 HOH B 7 307 81 HOH HOH . K 5 HOH B 8 308 28 HOH HOH . K 5 HOH B 9 309 124 HOH HOH . K 5 HOH B 10 310 26 HOH HOH . K 5 HOH B 11 311 136 HOH HOH . K 5 HOH B 12 312 47 HOH HOH . K 5 HOH B 13 313 16 HOH HOH . K 5 HOH B 14 314 84 HOH HOH . K 5 HOH B 15 315 37 HOH HOH . K 5 HOH B 16 316 115 HOH HOH . K 5 HOH B 17 317 127 HOH HOH . K 5 HOH B 18 318 96 HOH HOH . K 5 HOH B 19 319 125 HOH HOH . K 5 HOH B 20 320 117 HOH HOH . K 5 HOH B 21 321 30 HOH HOH . K 5 HOH B 22 322 19 HOH HOH . K 5 HOH B 23 323 120 HOH HOH . K 5 HOH B 24 324 2 HOH HOH . K 5 HOH B 25 325 75 HOH HOH . K 5 HOH B 26 326 11 HOH HOH . K 5 HOH B 27 327 121 HOH HOH . K 5 HOH B 28 328 79 HOH HOH . K 5 HOH B 29 329 9 HOH HOH . K 5 HOH B 30 330 14 HOH HOH . K 5 HOH B 31 331 8 HOH HOH . K 5 HOH B 32 332 50 HOH HOH . K 5 HOH B 33 333 114 HOH HOH . K 5 HOH B 34 334 112 HOH HOH . K 5 HOH B 35 335 17 HOH HOH . K 5 HOH B 36 336 70 HOH HOH . K 5 HOH B 37 337 44 HOH HOH . K 5 HOH B 38 338 88 HOH HOH . K 5 HOH B 39 339 10 HOH HOH . K 5 HOH B 40 340 40 HOH HOH . K 5 HOH B 41 341 21 HOH HOH . K 5 HOH B 42 342 74 HOH HOH . K 5 HOH B 43 343 56 HOH HOH . K 5 HOH B 44 344 128 HOH HOH . K 5 HOH B 45 345 104 HOH HOH . K 5 HOH B 46 346 42 HOH HOH . K 5 HOH B 47 347 3 HOH HOH . K 5 HOH B 48 348 85 HOH HOH . K 5 HOH B 49 349 31 HOH HOH . K 5 HOH B 50 350 63 HOH HOH . K 5 HOH B 51 351 1 HOH HOH . K 5 HOH B 52 352 135 HOH HOH . K 5 HOH B 53 353 77 HOH HOH . K 5 HOH B 54 354 59 HOH HOH . K 5 HOH B 55 355 57 HOH HOH . K 5 HOH B 56 356 62 HOH HOH . K 5 HOH B 57 357 107 HOH HOH . K 5 HOH B 58 358 119 HOH HOH . K 5 HOH B 59 359 103 HOH HOH . K 5 HOH B 60 360 39 HOH HOH . K 5 HOH B 61 361 126 HOH HOH . K 5 HOH B 62 362 29 HOH HOH . K 5 HOH B 63 363 49 HOH HOH . K 5 HOH B 64 364 129 HOH HOH . K 5 HOH B 65 365 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 24.613 -8.732 -1.684 0.98 33.77 ? PA NAD 201 A 1 HETATM 2 O O1A NAD . . . C 2 24.768 -8.941 -0.205 0.98 31.82 ? O1A NAD 201 A 1 HETATM 3 O O2A NAD . . . C 2 23.723 -9.59 -2.517 0.98 31.35 ? O2A NAD 201 A 1 HETATM 4 O O5B NAD . . . C 2 26.065 -8.724 -2.323 0.98 29.22 ? O5B NAD 201 A 1 HETATM 5 C C5B NAD . . . C 2 26.318 -8.439 -3.706 0.98 28.69 ? C5B NAD 201 A 1 HETATM 6 C C4B NAD . . . C 2 27.672 -7.775 -3.708 0.98 30.23 ? C4B NAD 201 A 1 HETATM 7 O O4B NAD . . . C 2 28.235 -7.76 -5.043 0.98 30.94 ? O4B NAD 201 A 1 HETATM 8 C C3B NAD . . . C 2 27.692 -6.32 -3.203 0.98 28.67 ? C3B NAD 201 A 1 HETATM 9 O O3B NAD . . . C 2 28.728 -6.152 -2.248 0.98 30.02 ? O3B NAD 201 A 1 HETATM 10 C C2B NAD . . . C 2 28.014 -5.528 -4.466 0.98 28.19 ? C2B NAD 201 A 1 HETATM 11 O O2B NAD . . . C 2 28.631 -4.279 -4.231 0.98 30.96 ? O2B NAD 201 A 1 HETATM 12 C C1B NAD . . . C 2 28.898 -6.533 -5.195 0.98 29.66 ? C1B NAD 201 A 1 HETATM 13 N N9A NAD . . . C 2 28.988 -6.26 -6.614 0.98 29.43 ? N9A NAD 201 A 1 HETATM 14 C C8A NAD . . . C 2 28.013 -5.7 -7.395 0.98 28.47 ? C8A NAD 201 A 1 HETATM 15 N N7A NAD . . . C 2 28.371 -5.574 -8.645 0.98 27.77 ? N7A NAD 201 A 1 HETATM 16 C C5A NAD . . . C 2 29.66 -6.074 -8.68 0.98 30.8 ? C5A NAD 201 A 1 HETATM 17 C C6A NAD . . . C 2 30.576 -6.203 -9.728 0.98 31.4 ? C6A NAD 201 A 1 HETATM 18 N N6A NAD . . . C 2 30.309 -5.816 -10.968 0.98 29.73 ? N6A NAD 201 A 1 HETATM 19 N N1A NAD . . . C 2 31.776 -6.76 -9.435 0.98 31.64 ? N1A NAD 201 A 1 HETATM 20 C C2A NAD . . . C 2 32.022 -7.147 -8.172 0.98 27.82 ? C2A NAD 201 A 1 HETATM 21 N N3A NAD . . . C 2 31.234 -7.075 -7.102 0.98 28.59 ? N3A NAD 201 A 1 HETATM 22 C C4A NAD . . . C 2 30.053 -6.518 -7.434 0.98 29.31 ? C4A NAD 201 A 1 HETATM 23 O O3 NAD . . . C 2 24.16 -7.211 -1.886 0.98 32.27 ? O3 NAD 201 A 1 HETATM 24 P PN NAD . . . C 2 24.367 -5.977 -0.881 0.98 24.46 ? PN NAD 201 A 1 HETATM 25 O O1N NAD . . . C 2 23.763 -4.783 -1.522 0.98 28.71 ? O1N NAD 201 A 1 HETATM 26 O O2N NAD . . . C 2 25.797 -6.034 -0.442 0.98 31.49 ? O2N NAD 201 A 1 HETATM 27 O O5D NAD . . . C 2 23.474 -6.441 0.361 0.98 32.03 ? O5D NAD 201 A 1 HETATM 28 C C5D NAD . . . C 2 22.106 -6.733 0.068 0.98 30.65 ? C5D NAD 201 A 1 HETATM 29 C C4D NAD . . . C 2 21.294 -6.508 1.315 0.98 32.68 ? C4D NAD 201 A 1 HETATM 30 O O4D NAD . . . C 2 21.603 -5.197 1.86 0.98 30.16 ? O4D NAD 201 A 1 HETATM 31 C C3D NAD . . . C 2 19.778 -6.514 1.066 0.98 31.11 ? C3D NAD 201 A 1 HETATM 32 O O3D NAD . . . C 2 19.061 -6.962 2.203 0.98 29.34 ? O3D NAD 201 A 1 HETATM 33 C C2D NAD . . . C 2 19.532 -5.038 0.715 0.98 29.38 ? C2D NAD 201 A 1 HETATM 34 O O2D NAD . . . C 2 18.208 -4.545 0.879 0.98 30.97 ? O2D NAD 201 A 1 HETATM 35 C C1D NAD . . . C 2 20.481 -4.33 1.679 0.98 30.18 ? C1D NAD 201 A 1 HETATM 36 N N1N NAD . . . C 2 20.882 -3 1.142 0.98 30.54 ? N1N NAD 201 A 1 HETATM 37 C C2N NAD . . . C 2 22.135 -2.773 0.603 0.98 28.18 ? C2N NAD 201 A 1 HETATM 38 C C3N NAD . . . C 2 22.454 -1.499 0.127 0.98 29.35 ? C3N NAD 201 A 1 HETATM 39 C C7N NAD . . . C 2 23.806 -1.163 -0.434 0.98 29.91 ? C7N NAD 201 A 1 HETATM 40 O O7N NAD . . . C 2 24.091 0.023 -0.687 0.98 28.46 ? O7N NAD 201 A 1 HETATM 41 N N7N NAD . . . C 2 24.657 -2.149 -0.664 0.98 27.02 ? N7N NAD 201 A 1 HETATM 42 C C4N NAD . . . C 2 21.487 -0.497 0.122 0.98 29.4 ? C4N NAD 201 A 1 HETATM 43 C C5N NAD . . . C 2 20.236 -0.737 0.653 0.98 29.23 ? C5N NAD 201 A 1 HETATM 44 C C6N NAD . . . C 2 19.946 -1.988 1.151 0.98 29.26 ? C6N NAD 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #