data_8TG2 # _model_server_result.job_id 0GXu5PeYVBi0DG5aE5E5-A _model_server_result.datetime_utc '2025-07-01 10:15:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 8TG2 # _exptl.entry_id 8TG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 566.302 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "URIDINE-5'-DIPHOSPHATE-GLUCOSE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.69 _cell.angle_gamma 90 _cell.entry_id 8TG2 _cell.length_a 107.09 _cell.length_b 121.9 _cell.length_c 60.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H24 N2 O17 P2' _chem_comp.formula_weight 566.302 _chem_comp.id UPG _chem_comp.mon_nstd_flag . _chem_comp.name "URIDINE-5'-DIPHOSPHATE-GLUCOSE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 UPG sing 368 n n N1 C6 UPG sing 369 n n N1 C1C UPG sing 370 n n C2 N3 UPG sing 371 n n C2 O2 UPG doub 372 n n N3 C4 UPG sing 373 n n N3 HN3 UPG sing 374 n n C4 C5 UPG sing 375 n n C4 O4 UPG doub 376 n n C5 C6 UPG doub 377 n n C5 H5 UPG sing 378 n n C6 H6 UPG sing 379 n n C1C C2C UPG sing 380 n n C1C O4C UPG sing 381 n n C1C H1C UPG sing 382 n n C2C O2C UPG sing 383 n n C2C C3C UPG sing 384 n n C2C H2C UPG sing 385 n n O2C HO2C UPG sing 386 n n C3C C4C UPG sing 387 n n C3C O3C UPG sing 388 n n C3C H3C UPG sing 389 n n C4C O4C UPG sing 390 n n C4C C5C UPG sing 391 n n C4C H4C UPG sing 392 n n O3C HO3C UPG sing 393 n n C5C O5C UPG sing 394 n n C5C H5C1 UPG sing 395 n n C5C H5C2 UPG sing 396 n n O5C PA UPG sing 397 n n PA O1A UPG doub 398 n n PA O2A UPG sing 399 n n PA O3A UPG sing 400 n n O2A HOA2 UPG sing 401 n n O3A PB UPG sing 402 n n PB O1B UPG doub 403 n n PB O2B UPG sing 404 n n PB O3B UPG sing 405 n n O2B HOB2 UPG sing 406 n n O3B C1' UPG sing 407 n n C1' C2' UPG sing 408 n n C1' O5' UPG sing 409 n n C1' H1' UPG sing 410 n n C2' C3' UPG sing 411 n n C2' O2' UPG sing 412 n n C2' H2' UPG sing 413 n n C3' C4' UPG sing 414 n n C3' O3' UPG sing 415 n n C3' H3' UPG sing 416 n n C4' C5' UPG sing 417 n n C4' O4' UPG sing 418 n n C4' H4' UPG sing 419 n n C5' C6' UPG sing 420 n n C5' O5' UPG sing 421 n n C5' H5' UPG sing 422 n n C6' O6' UPG sing 423 n n C6' "H6'1" UPG sing 424 n n C6' "H6'2" UPG sing 425 n n O2' HO2' UPG sing 426 n n O3' HO3' UPG sing 427 n n O4' HO4' UPG sing 428 n n O6' HO6' UPG sing 429 n n # _atom_sites.entry_id 8TG2 _atom_sites.fract_transf_matrix[1][1] 0.009338 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002623 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UPG A 1 700 700 UPG UPG . C 3 POP A 1 701 701 POP POP . D 3 POP A 1 702 702 POP POP . E 4 HOH A 1 801 142 HOH HOH . E 4 HOH A 2 802 302 HOH HOH . E 4 HOH A 3 803 162 HOH HOH . E 4 HOH A 4 804 340 HOH HOH . E 4 HOH A 5 805 85 HOH HOH . E 4 HOH A 6 806 476 HOH HOH . E 4 HOH A 7 807 608 HOH HOH . E 4 HOH A 8 808 532 HOH HOH . E 4 HOH A 9 809 491 HOH HOH . E 4 HOH A 10 810 582 HOH HOH . E 4 HOH A 11 811 525 HOH HOH . E 4 HOH A 12 812 13 HOH HOH . E 4 HOH A 13 813 437 HOH HOH . E 4 HOH A 14 814 487 HOH HOH . E 4 HOH A 15 815 623 HOH HOH . E 4 HOH A 16 816 561 HOH HOH . E 4 HOH A 17 817 526 HOH HOH . E 4 HOH A 18 818 499 HOH HOH . E 4 HOH A 19 819 559 HOH HOH . E 4 HOH A 20 820 477 HOH HOH . E 4 HOH A 21 821 436 HOH HOH . E 4 HOH A 22 822 290 HOH HOH . E 4 HOH A 23 823 535 HOH HOH . E 4 HOH A 24 824 611 HOH HOH . E 4 HOH A 25 825 216 HOH HOH . E 4 HOH A 26 826 598 HOH HOH . E 4 HOH A 27 827 564 HOH HOH . E 4 HOH A 28 828 581 HOH HOH . E 4 HOH A 29 829 541 HOH HOH . E 4 HOH A 30 830 130 HOH HOH . E 4 HOH A 31 831 578 HOH HOH . E 4 HOH A 32 832 281 HOH HOH . E 4 HOH A 33 833 441 HOH HOH . E 4 HOH A 34 834 620 HOH HOH . E 4 HOH A 35 835 482 HOH HOH . E 4 HOH A 36 836 502 HOH HOH . E 4 HOH A 37 837 519 HOH HOH . E 4 HOH A 38 838 596 HOH HOH . E 4 HOH A 39 839 483 HOH HOH . E 4 HOH A 40 840 227 HOH HOH . E 4 HOH A 41 841 626 HOH HOH . E 4 HOH A 42 842 36 HOH HOH . E 4 HOH A 43 843 172 HOH HOH . E 4 HOH A 44 844 171 HOH HOH . E 4 HOH A 45 845 299 HOH HOH . E 4 HOH A 46 846 523 HOH HOH . E 4 HOH A 47 847 393 HOH HOH . E 4 HOH A 48 848 475 HOH HOH . E 4 HOH A 49 849 406 HOH HOH . E 4 HOH A 50 850 637 HOH HOH . E 4 HOH A 51 851 108 HOH HOH . E 4 HOH A 52 852 146 HOH HOH . E 4 HOH A 53 853 508 HOH HOH . E 4 HOH A 54 854 111 HOH HOH . E 4 HOH A 55 855 116 HOH HOH . E 4 HOH A 56 856 105 HOH HOH . E 4 HOH A 57 857 128 HOH HOH . E 4 HOH A 58 859 570 HOH HOH . E 4 HOH A 59 860 633 HOH HOH . E 4 HOH A 60 861 1 HOH HOH . E 4 HOH A 61 862 468 HOH HOH . E 4 HOH A 62 863 610 HOH HOH . E 4 HOH A 63 864 627 HOH HOH . E 4 HOH A 64 865 513 HOH HOH . E 4 HOH A 65 866 490 HOH HOH . E 4 HOH A 66 867 545 HOH HOH . E 4 HOH A 67 868 8 HOH HOH . E 4 HOH A 68 869 603 HOH HOH . E 4 HOH A 69 870 357 HOH HOH . E 4 HOH A 70 871 616 HOH HOH . E 4 HOH A 71 872 301 HOH HOH . E 4 HOH A 72 873 57 HOH HOH . E 4 HOH A 73 874 294 HOH HOH . E 4 HOH A 74 875 397 HOH HOH . E 4 HOH A 75 876 566 HOH HOH . E 4 HOH A 76 877 404 HOH HOH . E 4 HOH A 77 878 243 HOH HOH . E 4 HOH A 78 879 14 HOH HOH . E 4 HOH A 79 880 594 HOH HOH . E 4 HOH A 80 881 412 HOH HOH . E 4 HOH A 81 882 286 HOH HOH . E 4 HOH A 82 883 341 HOH HOH . E 4 HOH A 83 884 572 HOH HOH . E 4 HOH A 84 885 175 HOH HOH . E 4 HOH A 85 886 313 HOH HOH . E 4 HOH A 86 887 494 HOH HOH . E 4 HOH A 87 888 120 HOH HOH . E 4 HOH A 88 889 316 HOH HOH . E 4 HOH A 89 890 609 HOH HOH . E 4 HOH A 90 891 600 HOH HOH . E 4 HOH A 91 892 19 HOH HOH . E 4 HOH A 92 893 331 HOH HOH . E 4 HOH A 93 894 567 HOH HOH . E 4 HOH A 94 895 592 HOH HOH . E 4 HOH A 95 896 558 HOH HOH . E 4 HOH A 96 897 248 HOH HOH . E 4 HOH A 97 898 11 HOH HOH . E 4 HOH A 98 899 31 HOH HOH . E 4 HOH A 99 900 470 HOH HOH . E 4 HOH A 100 901 23 HOH HOH . E 4 HOH A 101 902 91 HOH HOH . E 4 HOH A 102 903 300 HOH HOH . E 4 HOH A 103 904 207 HOH HOH . E 4 HOH A 104 905 584 HOH HOH . E 4 HOH A 105 906 562 HOH HOH . E 4 HOH A 106 907 580 HOH HOH . E 4 HOH A 107 908 27 HOH HOH . E 4 HOH A 108 909 410 HOH HOH . E 4 HOH A 109 910 347 HOH HOH . E 4 HOH A 110 911 575 HOH HOH . E 4 HOH A 111 912 551 HOH HOH . E 4 HOH A 112 913 375 HOH HOH . E 4 HOH A 113 914 144 HOH HOH . E 4 HOH A 114 915 303 HOH HOH . E 4 HOH A 115 916 364 HOH HOH . E 4 HOH A 116 917 323 HOH HOH . E 4 HOH A 117 918 12 HOH HOH . E 4 HOH A 118 919 606 HOH HOH . E 4 HOH A 119 920 360 HOH HOH . E 4 HOH A 120 921 474 HOH HOH . E 4 HOH A 121 922 426 HOH HOH . E 4 HOH A 122 923 29 HOH HOH . E 4 HOH A 123 924 601 HOH HOH . E 4 HOH A 124 925 274 HOH HOH . E 4 HOH A 125 926 405 HOH HOH . E 4 HOH A 126 927 635 HOH HOH . E 4 HOH A 127 928 634 HOH HOH . E 4 HOH A 128 929 503 HOH HOH . E 4 HOH A 129 930 488 HOH HOH . E 4 HOH A 130 931 573 HOH HOH . E 4 HOH A 131 932 489 HOH HOH . E 4 HOH A 132 933 498 HOH HOH . E 4 HOH A 133 934 590 HOH HOH . E 4 HOH A 134 935 421 HOH HOH . E 4 HOH A 135 936 292 HOH HOH . E 4 HOH A 136 937 589 HOH HOH . E 4 HOH A 137 938 399 HOH HOH . E 4 HOH A 138 939 59 HOH HOH . E 4 HOH A 139 940 588 HOH HOH . E 4 HOH A 140 941 497 HOH HOH . E 4 HOH A 141 942 400 HOH HOH . E 4 HOH A 142 943 356 HOH HOH . E 4 HOH A 143 944 439 HOH HOH . E 4 HOH A 144 945 186 HOH HOH . E 4 HOH A 145 946 615 HOH HOH . E 4 HOH A 146 947 512 HOH HOH . E 4 HOH A 147 948 117 HOH HOH . E 4 HOH A 148 949 624 HOH HOH . E 4 HOH A 149 950 614 HOH HOH . E 4 HOH A 150 951 4 HOH HOH . E 4 HOH A 151 952 266 HOH HOH . E 4 HOH A 152 953 2 HOH HOH . E 4 HOH A 153 954 613 HOH HOH . E 4 HOH A 154 955 593 HOH HOH . E 4 HOH A 155 956 617 HOH HOH . E 4 HOH A 156 957 445 HOH HOH . E 4 HOH A 157 958 456 HOH HOH . E 4 HOH A 158 959 585 HOH HOH . E 4 HOH A 159 960 612 HOH HOH . E 4 HOH A 160 961 586 HOH HOH . E 4 HOH A 161 962 563 HOH HOH . E 4 HOH A 162 963 21 HOH HOH . E 4 HOH A 163 964 516 HOH HOH . E 4 HOH A 164 965 632 HOH HOH . E 4 HOH A 165 966 349 HOH HOH . E 4 HOH A 166 967 543 HOH HOH . E 4 HOH A 167 968 595 HOH HOH . E 4 HOH A 168 969 629 HOH HOH . E 4 HOH A 169 970 577 HOH HOH . E 4 HOH A 170 971 151 HOH HOH . E 4 HOH A 171 972 258 HOH HOH . E 4 HOH A 172 973 597 HOH HOH . E 4 HOH A 173 974 450 HOH HOH . E 4 HOH A 174 975 270 HOH HOH . E 4 HOH A 175 976 552 HOH HOH . E 4 HOH A 176 977 479 HOH HOH . E 4 HOH A 177 978 560 HOH HOH . E 4 HOH A 178 979 587 HOH HOH . E 4 HOH A 179 980 527 HOH HOH . E 4 HOH A 180 981 549 HOH HOH . E 4 HOH A 181 982 622 HOH HOH . E 4 HOH A 182 983 576 HOH HOH . E 4 HOH A 183 984 625 HOH HOH . E 4 HOH A 184 985 565 HOH HOH . E 4 HOH A 185 986 518 HOH HOH . E 4 HOH A 186 987 636 HOH HOH . E 4 HOH A 187 988 272 HOH HOH . E 4 HOH A 188 989 500 HOH HOH . E 4 HOH A 189 990 416 HOH HOH . E 4 HOH A 190 991 505 HOH HOH . E 4 HOH A 191 992 332 HOH HOH . E 4 HOH A 192 993 170 HOH HOH . E 4 HOH A 193 994 639 HOH HOH . E 4 HOH A 194 995 521 HOH HOH . E 4 HOH A 195 996 544 HOH HOH . E 4 HOH A 196 997 605 HOH HOH . E 4 HOH A 197 998 293 HOH HOH . E 4 HOH A 198 999 630 HOH HOH . E 4 HOH A 199 1000 484 HOH HOH . E 4 HOH A 200 1001 507 HOH HOH . E 4 HOH A 201 1002 569 HOH HOH . E 4 HOH A 202 1003 571 HOH HOH . E 4 HOH A 203 1004 352 HOH HOH . E 4 HOH A 204 1005 618 HOH HOH . E 4 HOH A 205 1006 574 HOH HOH . E 4 HOH A 206 1007 345 HOH HOH . E 4 HOH A 207 1008 631 HOH HOH . E 4 HOH A 208 1009 509 HOH HOH . E 4 HOH A 209 1010 599 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 UPG . . . B 2 9.541 9.174 31.803 1 67.38 ? N1 UPG 700 A 1 HETATM 2 C C2 UPG . . . B 2 8.965 9.086 33.06 1 71.67 ? C2 UPG 700 A 1 HETATM 3 N N3 UPG . . . B 2 8.799 10.285 33.708 1 73.06 ? N3 UPG 700 A 1 HETATM 4 C C4 UPG . . . B 2 9.164 11.537 33.244 1 69.64 ? C4 UPG 700 A 1 HETATM 5 C C5 UPG . . . B 2 9.739 11.543 31.931 1 71.37 ? C5 UPG 700 A 1 HETATM 6 C C6 UPG . . . B 2 9.91 10.386 31.273 1 66.99 ? C6 UPG 700 A 1 HETATM 7 O O2 UPG . . . B 2 8.629 8.023 33.559 1 67.31 ? O2 UPG 700 A 1 HETATM 8 O O4 UPG . . . B 2 8.947 12.533 33.931 1 65.28 ? O4 UPG 700 A 1 HETATM 9 C C1C UPG . . . B 2 9.769 7.919 31.075 1 60 ? C1C UPG 700 A 1 HETATM 10 C C2C UPG . . . B 2 8.902 7.767 29.83 1 57 ? C2C UPG 700 A 1 HETATM 11 O O2C UPG . . . B 2 7.618 7.307 30.179 1 50.8 ? O2C UPG 700 A 1 HETATM 12 C C3C UPG . . . B 2 9.721 6.739 29.045 1 57.03 ? C3C UPG 700 A 1 HETATM 13 C C4C UPG . . . B 2 11.17 7.11 29.411 1 61.41 ? C4C UPG 700 A 1 HETATM 14 O O4C UPG . . . B 2 11.093 7.921 30.606 1 62.17 ? O4C UPG 700 A 1 HETATM 15 O O3C UPG . . . B 2 9.451 5.399 29.439 1 60.73 ? O3C UPG 700 A 1 HETATM 16 C C5C UPG . . . B 2 11.964 7.862 28.376 1 60.83 ? C5C UPG 700 A 1 HETATM 17 O O5C UPG . . . B 2 11.305 9.097 28.029 1 62.74 ? O5C UPG 700 A 1 HETATM 18 P PA UPG . . . B 2 11.353 9.516 26.476 1 66 ? PA UPG 700 A 1 HETATM 19 O O1A UPG . . . B 2 10.725 10.847 26.329 1 70.63 ? O1A UPG 700 A 1 HETATM 20 O O2A UPG . . . B 2 10.853 8.412 25.612 1 72.94 ? O2A UPG 700 A 1 HETATM 21 O O3A UPG . . . B 2 12.938 9.575 26.267 1 75.06 ? O3A UPG 700 A 1 HETATM 22 P PB UPG . . . B 2 14.038 10.662 26.636 1 63.82 ? PB UPG 700 A 1 HETATM 23 O O1B UPG . . . B 2 14.007 10.946 28.093 1 73.27 ? O1B UPG 700 A 1 HETATM 24 O O2B UPG . . . B 2 13.8 11.775 25.67 1 69.67 ? O2B UPG 700 A 1 HETATM 25 O O3B UPG . . . B 2 15.389 9.849 26.324 1 72.5 ? O3B UPG 700 A 1 HETATM 26 C C1' UPG . . . B 2 15.778 8.738 27.061 1 67.6 ? C1' UPG 700 A 1 HETATM 27 C C2' UPG . . . B 2 17.203 8.937 27.575 1 67.89 ? C2' UPG 700 A 1 HETATM 28 C C3' UPG . . . B 2 18.201 8.947 26.443 1 69.64 ? C3' UPG 700 A 1 HETATM 29 C C4' UPG . . . B 2 18.025 7.698 25.601 1 73.56 ? C4' UPG 700 A 1 HETATM 30 C C5' UPG . . . B 2 16.58 7.578 25.118 1 70.7 ? C5' UPG 700 A 1 HETATM 31 C C6' UPG . . . B 2 16.323 6.261 24.396 1 68.22 ? C6' UPG 700 A 1 HETATM 32 O O2' UPG . . . B 2 17.278 10.153 28.294 1 64.63 ? O2' UPG 700 A 1 HETATM 33 O O3' UPG . . . B 2 19.534 9.004 26.954 1 71.14 ? O3' UPG 700 A 1 HETATM 34 O O4' UPG . . . B 2 18.882 7.737 24.469 1 66.33 ? O4' UPG 700 A 1 HETATM 35 O O5' UPG . . . B 2 15.691 7.602 26.232 1 59.82 ? O5' UPG 700 A 1 HETATM 36 O O6' UPG . . . B 2 15.005 6.178 23.891 1 60.24 ? O6' UPG 700 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #