data_8TG3 # _model_server_result.job_id oPc-YXoWIRfvbS5PyVUCqw _model_server_result.datetime_utc '2024-11-29 01:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8TG3 # _exptl.entry_id 8TG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.74 _cell.angle_gamma 90 _cell.entry_id 8TG3 _cell.length_a 39.891 _cell.length_b 55.883 _cell.length_c 42.403 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 168 A CYS 148 1_555 A SG CYS 193 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 I K K . A K 308 1_555 J O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 I K K . A K 308 1_555 J O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 8TG3 _atom_sites.fract_transf_matrix[1][1] 0.025068 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003407 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0238 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HQG A 1 301 301 HQG HQG . C 3 NO3 A 1 302 302 NO3 NO3 . D 4 GOL A 1 303 303 GOL GOL . E 4 GOL A 1 304 307 GOL GOL . F 3 NO3 A 1 305 310 NO3 NO3 . G 3 NO3 A 1 306 311 NO3 NO3 . H 5 PEG A 1 307 312 PEG PEG . I 6 K A 1 308 1 K K . J 7 HOH A 1 401 121 HOH HOH . J 7 HOH A 2 402 94 HOH HOH . J 7 HOH A 3 403 157 HOH HOH . J 7 HOH A 4 404 80 HOH HOH . J 7 HOH A 5 405 122 HOH HOH . J 7 HOH A 6 406 126 HOH HOH . J 7 HOH A 7 407 61 HOH HOH . J 7 HOH A 8 408 168 HOH HOH . J 7 HOH A 9 409 83 HOH HOH . J 7 HOH A 10 410 196 HOH HOH . J 7 HOH A 11 411 89 HOH HOH . J 7 HOH A 12 412 84 HOH HOH . J 7 HOH A 13 413 100 HOH HOH . J 7 HOH A 14 414 31 HOH HOH . J 7 HOH A 15 415 12 HOH HOH . J 7 HOH A 16 416 142 HOH HOH . J 7 HOH A 17 417 32 HOH HOH . J 7 HOH A 18 418 33 HOH HOH . J 7 HOH A 19 419 81 HOH HOH . J 7 HOH A 20 420 111 HOH HOH . J 7 HOH A 21 421 200 HOH HOH . J 7 HOH A 22 422 154 HOH HOH . J 7 HOH A 23 423 148 HOH HOH . J 7 HOH A 24 424 137 HOH HOH . J 7 HOH A 25 425 123 HOH HOH . J 7 HOH A 26 426 36 HOH HOH . J 7 HOH A 27 427 174 HOH HOH . J 7 HOH A 28 428 199 HOH HOH . J 7 HOH A 29 429 16 HOH HOH . J 7 HOH A 30 430 190 HOH HOH . J 7 HOH A 31 431 113 HOH HOH . J 7 HOH A 32 432 86 HOH HOH . J 7 HOH A 33 433 144 HOH HOH . J 7 HOH A 34 434 41 HOH HOH . J 7 HOH A 35 435 43 HOH HOH . J 7 HOH A 36 436 98 HOH HOH . J 7 HOH A 37 437 55 HOH HOH . J 7 HOH A 38 438 60 HOH HOH . J 7 HOH A 39 439 58 HOH HOH . J 7 HOH A 40 440 59 HOH HOH . J 7 HOH A 41 441 13 HOH HOH . J 7 HOH A 42 442 56 HOH HOH . J 7 HOH A 43 443 72 HOH HOH . J 7 HOH A 44 444 8 HOH HOH . J 7 HOH A 45 445 42 HOH HOH . J 7 HOH A 46 446 95 HOH HOH . J 7 HOH A 47 447 187 HOH HOH . J 7 HOH A 48 448 73 HOH HOH . J 7 HOH A 49 449 106 HOH HOH . J 7 HOH A 50 450 77 HOH HOH . J 7 HOH A 51 451 104 HOH HOH . J 7 HOH A 52 452 202 HOH HOH . J 7 HOH A 53 453 9 HOH HOH . J 7 HOH A 54 454 151 HOH HOH . J 7 HOH A 55 455 34 HOH HOH . J 7 HOH A 56 456 23 HOH HOH . J 7 HOH A 57 457 49 HOH HOH . J 7 HOH A 58 458 35 HOH HOH . J 7 HOH A 59 459 110 HOH HOH . J 7 HOH A 60 460 186 HOH HOH . J 7 HOH A 61 461 105 HOH HOH . J 7 HOH A 62 462 101 HOH HOH . J 7 HOH A 63 463 51 HOH HOH . J 7 HOH A 64 464 117 HOH HOH . J 7 HOH A 65 465 39 HOH HOH . J 7 HOH A 66 466 62 HOH HOH . J 7 HOH A 67 467 167 HOH HOH . J 7 HOH A 68 468 19 HOH HOH . J 7 HOH A 69 469 124 HOH HOH . J 7 HOH A 70 470 22 HOH HOH . J 7 HOH A 71 471 26 HOH HOH . J 7 HOH A 72 472 115 HOH HOH . J 7 HOH A 73 473 118 HOH HOH . J 7 HOH A 74 474 4 HOH HOH . J 7 HOH A 75 475 38 HOH HOH . J 7 HOH A 76 476 3 HOH HOH . J 7 HOH A 77 477 74 HOH HOH . J 7 HOH A 78 478 169 HOH HOH . J 7 HOH A 79 479 136 HOH HOH . J 7 HOH A 80 480 163 HOH HOH . J 7 HOH A 81 481 201 HOH HOH . J 7 HOH A 82 482 11 HOH HOH . J 7 HOH A 83 483 147 HOH HOH . J 7 HOH A 84 484 79 HOH HOH . J 7 HOH A 85 485 65 HOH HOH . J 7 HOH A 86 486 87 HOH HOH . J 7 HOH A 87 487 160 HOH HOH . J 7 HOH A 88 488 2 HOH HOH . J 7 HOH A 89 489 48 HOH HOH . J 7 HOH A 90 490 40 HOH HOH . J 7 HOH A 91 491 191 HOH HOH . J 7 HOH A 92 492 158 HOH HOH . J 7 HOH A 93 493 10 HOH HOH . J 7 HOH A 94 494 102 HOH HOH . J 7 HOH A 95 495 76 HOH HOH . J 7 HOH A 96 496 18 HOH HOH . J 7 HOH A 97 497 161 HOH HOH . J 7 HOH A 98 498 37 HOH HOH . J 7 HOH A 99 499 193 HOH HOH . J 7 HOH A 100 500 91 HOH HOH . J 7 HOH A 101 501 21 HOH HOH . J 7 HOH A 102 502 25 HOH HOH . J 7 HOH A 103 503 68 HOH HOH . J 7 HOH A 104 504 152 HOH HOH . J 7 HOH A 105 505 20 HOH HOH . J 7 HOH A 106 506 67 HOH HOH . J 7 HOH A 107 507 30 HOH HOH . J 7 HOH A 108 508 103 HOH HOH . J 7 HOH A 109 509 109 HOH HOH . J 7 HOH A 110 510 52 HOH HOH . J 7 HOH A 111 511 185 HOH HOH . J 7 HOH A 112 512 172 HOH HOH . J 7 HOH A 113 513 53 HOH HOH . J 7 HOH A 114 514 178 HOH HOH . J 7 HOH A 115 515 188 HOH HOH . J 7 HOH A 116 516 175 HOH HOH . J 7 HOH A 117 517 107 HOH HOH . J 7 HOH A 118 518 153 HOH HOH . J 7 HOH A 119 519 71 HOH HOH . J 7 HOH A 120 520 173 HOH HOH . J 7 HOH A 121 521 54 HOH HOH . J 7 HOH A 122 522 180 HOH HOH . J 7 HOH A 123 523 127 HOH HOH . J 7 HOH A 124 524 119 HOH HOH . J 7 HOH A 125 525 97 HOH HOH . J 7 HOH A 126 526 78 HOH HOH . J 7 HOH A 127 527 128 HOH HOH . J 7 HOH A 128 528 207 HOH HOH . J 7 HOH A 129 529 179 HOH HOH . J 7 HOH A 130 530 184 HOH HOH . J 7 HOH A 131 531 114 HOH HOH . J 7 HOH A 132 532 198 HOH HOH . J 7 HOH A 133 533 195 HOH HOH . J 7 HOH A 134 534 182 HOH HOH . J 7 HOH A 135 535 192 HOH HOH . J 7 HOH A 136 536 14 HOH HOH . J 7 HOH A 137 537 50 HOH HOH . J 7 HOH A 138 538 116 HOH HOH . J 7 HOH A 139 539 162 HOH HOH . J 7 HOH A 140 540 125 HOH HOH . J 7 HOH A 141 541 197 HOH HOH . J 7 HOH A 142 542 156 HOH HOH . J 7 HOH A 143 543 131 HOH HOH . J 7 HOH A 144 544 209 HOH HOH . J 7 HOH A 145 545 194 HOH HOH . J 7 HOH A 146 546 64 HOH HOH . J 7 HOH A 147 547 90 HOH HOH . J 7 HOH A 148 548 189 HOH HOH . J 7 HOH A 149 549 206 HOH HOH . J 7 HOH A 150 550 149 HOH HOH . J 7 HOH A 151 551 15 HOH HOH . J 7 HOH A 152 552 150 HOH HOH . J 7 HOH A 153 553 208 HOH HOH . J 7 HOH A 154 554 129 HOH HOH . J 7 HOH A 155 555 75 HOH HOH . J 7 HOH A 156 556 57 HOH HOH . J 7 HOH A 157 557 143 HOH HOH . J 7 HOH A 158 558 134 HOH HOH . J 7 HOH A 159 559 138 HOH HOH . J 7 HOH A 160 560 6 HOH HOH . J 7 HOH A 161 561 47 HOH HOH . J 7 HOH A 162 562 177 HOH HOH . J 7 HOH A 163 563 112 HOH HOH . J 7 HOH A 164 564 24 HOH HOH . J 7 HOH A 165 565 69 HOH HOH . J 7 HOH A 166 566 205 HOH HOH . J 7 HOH A 167 567 108 HOH HOH . J 7 HOH A 168 568 204 HOH HOH . J 7 HOH A 169 569 70 HOH HOH . J 7 HOH A 170 570 63 HOH HOH . J 7 HOH A 171 571 176 HOH HOH . J 7 HOH A 172 572 203 HOH HOH . J 7 HOH A 173 573 164 HOH HOH . J 7 HOH A 174 574 170 HOH HOH . J 7 HOH A 175 575 132 HOH HOH . J 7 HOH A 176 576 85 HOH HOH . J 7 HOH A 177 577 92 HOH HOH . J 7 HOH A 178 578 5 HOH HOH . J 7 HOH A 179 579 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 14.513 -10.217 -17.198 1 29.22 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 14.303 -8.782 -17.152 1 27.96 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 13.449 -10.984 -18.019 1 28.6 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 12.793 -10.373 -19.069 1 27.68 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 13.979 -12.47 -18.234 1 27.88 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 13.795 -12.902 -19.582 1 26.46 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #