data_8TG4 # _model_server_result.job_id xTJql8HKlr10TcDBqS5zrQ _model_server_result.datetime_utc '2024-11-19 15:41:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 8TG4 # _exptl.entry_id 8TG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.79 _cell.angle_gamma 90 _cell.entry_id 8TG4 _cell.length_a 39.844 _cell.length_b 55.701 _cell.length_c 42.249 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 168 A CYS 148 1_555 A SG CYS 193 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A O ARG 43 A ARG 23 1_555 F K K . A K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc2 A OE1 GLU 54 A GLU 34 1_555 F K K . A K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 A OE2 GLU 54 A GLU 34 1_555 F K K . A K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? metalc ? metalc4 A O ARG 83 A ARG 63 1_555 H K K . A K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc5 A O TYR 95 A TYR 75 1_555 H K K . A K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc6 A OE1 GLU 177 A GLU 157 1_555 G K K . A K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc7 A O THR 185 A THR 165 1_555 G K K . A K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc8 A OG1 THR 185 A THR 165 1_555 G K K . A K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc9 E O15 9SO . A 9SO 203 1_555 I K K . A K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.483 ? metalc ? metalc10 E O18 9SO . A 9SO 203 1_555 I K K . A K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc11 I K K . A K 207 1_555 L O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc12 I K K . A K 207 1_555 L O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 189 n n C1 C2 EDO sing 190 n n C1 H11 EDO sing 191 n n C1 H12 EDO sing 192 n n O1 HO1 EDO sing 193 n n C2 O2 EDO sing 194 n n C2 H21 EDO sing 195 n n C2 H22 EDO sing 196 n n O2 HO2 EDO sing 197 n n # _atom_sites.entry_id 8TG4 _atom_sites.fract_transf_matrix[1][1] 0.025098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NO3 A 1 201 281 NO3 NO3 . D 4 EDO A 1 202 282 EDO EDO . E 5 9SO A 1 203 283 9SO 7UM . F 6 K A 1 204 1 K K . G 6 K A 1 205 3 K K . H 6 K A 1 206 4 K K . I 6 K A 1 207 5 K K . J 7 CL A 1 208 1 CL CL . K 7 CL A 1 209 2 CL CL . L 8 HOH A 1 301 96 HOH HOH . L 8 HOH A 2 302 46 HOH HOH . L 8 HOH A 3 303 147 HOH HOH . L 8 HOH A 4 304 33 HOH HOH . L 8 HOH A 5 305 89 HOH HOH . L 8 HOH A 6 306 111 HOH HOH . L 8 HOH A 7 307 25 HOH HOH . L 8 HOH A 8 308 53 HOH HOH . L 8 HOH A 9 309 137 HOH HOH . L 8 HOH A 10 310 6 HOH HOH . L 8 HOH A 11 311 50 HOH HOH . L 8 HOH A 12 312 87 HOH HOH . L 8 HOH A 13 313 63 HOH HOH . L 8 HOH A 14 314 48 HOH HOH . L 8 HOH A 15 315 146 HOH HOH . L 8 HOH A 16 316 21 HOH HOH . L 8 HOH A 17 317 160 HOH HOH . L 8 HOH A 18 318 94 HOH HOH . L 8 HOH A 19 319 126 HOH HOH . L 8 HOH A 20 320 4 HOH HOH . L 8 HOH A 21 321 90 HOH HOH . L 8 HOH A 22 322 15 HOH HOH . L 8 HOH A 23 323 73 HOH HOH . L 8 HOH A 24 324 13 HOH HOH . L 8 HOH A 25 325 123 HOH HOH . L 8 HOH A 26 326 105 HOH HOH . L 8 HOH A 27 327 64 HOH HOH . L 8 HOH A 28 328 100 HOH HOH . L 8 HOH A 29 329 74 HOH HOH . L 8 HOH A 30 330 103 HOH HOH . L 8 HOH A 31 331 9 HOH HOH . L 8 HOH A 32 332 29 HOH HOH . L 8 HOH A 33 333 26 HOH HOH . L 8 HOH A 34 334 45 HOH HOH . L 8 HOH A 35 335 7 HOH HOH . L 8 HOH A 36 336 68 HOH HOH . L 8 HOH A 37 337 72 HOH HOH . L 8 HOH A 38 338 5 HOH HOH . L 8 HOH A 39 339 59 HOH HOH . L 8 HOH A 40 340 148 HOH HOH . L 8 HOH A 41 341 135 HOH HOH . L 8 HOH A 42 342 132 HOH HOH . L 8 HOH A 43 343 98 HOH HOH . L 8 HOH A 44 344 165 HOH HOH . L 8 HOH A 45 345 39 HOH HOH . L 8 HOH A 46 346 18 HOH HOH . L 8 HOH A 47 347 93 HOH HOH . L 8 HOH A 48 348 47 HOH HOH . L 8 HOH A 49 349 57 HOH HOH . L 8 HOH A 50 350 11 HOH HOH . L 8 HOH A 51 351 82 HOH HOH . L 8 HOH A 52 352 62 HOH HOH . L 8 HOH A 53 353 36 HOH HOH . L 8 HOH A 54 354 76 HOH HOH . L 8 HOH A 55 355 12 HOH HOH . L 8 HOH A 56 356 144 HOH HOH . L 8 HOH A 57 357 49 HOH HOH . L 8 HOH A 58 358 161 HOH HOH . L 8 HOH A 59 359 136 HOH HOH . L 8 HOH A 60 360 61 HOH HOH . L 8 HOH A 61 361 113 HOH HOH . L 8 HOH A 62 362 3 HOH HOH . L 8 HOH A 63 363 32 HOH HOH . L 8 HOH A 64 364 51 HOH HOH . L 8 HOH A 65 365 151 HOH HOH . L 8 HOH A 66 366 52 HOH HOH . L 8 HOH A 67 367 27 HOH HOH . L 8 HOH A 68 368 16 HOH HOH . L 8 HOH A 69 369 71 HOH HOH . L 8 HOH A 70 370 104 HOH HOH . L 8 HOH A 71 371 122 HOH HOH . L 8 HOH A 72 372 2 HOH HOH . L 8 HOH A 73 373 155 HOH HOH . L 8 HOH A 74 374 95 HOH HOH . L 8 HOH A 75 375 101 HOH HOH . L 8 HOH A 76 376 14 HOH HOH . L 8 HOH A 77 377 40 HOH HOH . L 8 HOH A 78 378 8 HOH HOH . L 8 HOH A 79 379 67 HOH HOH . L 8 HOH A 80 380 60 HOH HOH . L 8 HOH A 81 381 20 HOH HOH . L 8 HOH A 82 382 55 HOH HOH . L 8 HOH A 83 383 41 HOH HOH . L 8 HOH A 84 384 24 HOH HOH . L 8 HOH A 85 385 97 HOH HOH . L 8 HOH A 86 386 17 HOH HOH . L 8 HOH A 87 387 85 HOH HOH . L 8 HOH A 88 388 112 HOH HOH . L 8 HOH A 89 389 164 HOH HOH . L 8 HOH A 90 390 42 HOH HOH . L 8 HOH A 91 391 77 HOH HOH . L 8 HOH A 92 392 35 HOH HOH . L 8 HOH A 93 393 121 HOH HOH . L 8 HOH A 94 394 109 HOH HOH . L 8 HOH A 95 395 23 HOH HOH . L 8 HOH A 96 396 149 HOH HOH . L 8 HOH A 97 397 86 HOH HOH . L 8 HOH A 98 398 78 HOH HOH . L 8 HOH A 99 399 38 HOH HOH . L 8 HOH A 100 400 143 HOH HOH . L 8 HOH A 101 401 110 HOH HOH . L 8 HOH A 102 402 145 HOH HOH . L 8 HOH A 103 403 130 HOH HOH . L 8 HOH A 104 404 54 HOH HOH . L 8 HOH A 105 405 138 HOH HOH . L 8 HOH A 106 406 75 HOH HOH . L 8 HOH A 107 407 170 HOH HOH . L 8 HOH A 108 408 171 HOH HOH . L 8 HOH A 109 409 65 HOH HOH . L 8 HOH A 110 410 31 HOH HOH . L 8 HOH A 111 411 154 HOH HOH . L 8 HOH A 112 412 166 HOH HOH . L 8 HOH A 113 413 119 HOH HOH . L 8 HOH A 114 414 92 HOH HOH . L 8 HOH A 115 415 70 HOH HOH . L 8 HOH A 116 416 56 HOH HOH . L 8 HOH A 117 417 22 HOH HOH . L 8 HOH A 118 418 69 HOH HOH . L 8 HOH A 119 419 167 HOH HOH . L 8 HOH A 120 420 28 HOH HOH . L 8 HOH A 121 421 81 HOH HOH . L 8 HOH A 122 422 159 HOH HOH . L 8 HOH A 123 423 142 HOH HOH . L 8 HOH A 124 424 30 HOH HOH . L 8 HOH A 125 425 158 HOH HOH . L 8 HOH A 126 426 168 HOH HOH . L 8 HOH A 127 427 58 HOH HOH . L 8 HOH A 128 428 88 HOH HOH . L 8 HOH A 129 429 127 HOH HOH . L 8 HOH A 130 430 156 HOH HOH . L 8 HOH A 131 431 43 HOH HOH . L 8 HOH A 132 432 157 HOH HOH . L 8 HOH A 133 433 129 HOH HOH . L 8 HOH A 134 434 172 HOH HOH . L 8 HOH A 135 435 66 HOH HOH . L 8 HOH A 136 436 19 HOH HOH . L 8 HOH A 137 437 118 HOH HOH . L 8 HOH A 138 438 162 HOH HOH . L 8 HOH A 139 439 120 HOH HOH . L 8 HOH A 140 440 163 HOH HOH . M 8 HOH C 1 101 169 HOH HOH . M 8 HOH C 2 102 91 HOH HOH . M 8 HOH C 3 103 99 HOH HOH . M 8 HOH C 4 104 107 HOH HOH . M 8 HOH C 5 105 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -8.103 -16.117 2.339 1 43.27 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . D 4 -7.573 -14.823 2.158 1 42.44 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . D 4 -8.318 -16.591 0.929 1 41.99 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . D 4 -9.694 -16.428 0.698 1 40.43 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #