data_8TGD # _model_server_result.job_id qCabB8fGuNwYP6Y4ODfing _model_server_result.datetime_utc '2025-01-23 05:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1504}' # _entry.id 8TGD # _exptl.entry_id 8TGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.371 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.86 _cell.angle_gamma 90 _cell.entry_id 8TGD _cell.length_a 86.154 _cell.length_b 124.502 _cell.length_c 165.418 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,V,W 1 1 C,D,Q,R,S,T,U,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 T N N # _chem_comp.formula 'C18 H19 F2 N5 O4' _chem_comp.formula_weight 407.371 _chem_comp.id X3N _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 X3N doub 385 n n O26 C27 X3N sing 386 n n O26 C25 X3N sing 387 n n C27 N22 X3N sing 388 n n C25 C23 X3N sing 389 n n N22 C23 X3N sing 390 n n N22 C20 X3N sing 391 n n C23 C29 X3N sing 392 n n C21 C20 X3N doub 393 n y C21 N17 X3N sing 394 n y C20 N19 X3N sing 395 n y N17 C16 X3N sing 396 n n N17 C18 X3N sing 397 n y C16 C15 X3N sing 398 n n N19 C18 X3N doub 399 n y F31 C29 X3N sing 400 n n C29 F30 X3N sing 401 n n C15 O14 X3N sing 402 n n C18 C11 X3N sing 403 n n C11 C10 X3N doub 404 n y C11 C12 X3N sing 405 n y O14 C12 X3N sing 406 n n C10 C9 X3N sing 407 n y C12 C13 X3N doub 408 n y C9 C8 X3N doub 409 n y C13 C8 X3N sing 410 n y N6 C4 X3N sing 411 n n C8 N7 X3N sing 412 n n C4 O5 X3N doub 413 n n C4 C2 X3N sing 414 n n N7 C2 X3N sing 415 n n C2 C1 X3N sing 416 n n C9 H1 X3N sing 417 n n C10 H2 X3N sing 418 n n C13 H4 X3N sing 419 n n C1 H5 X3N sing 420 n n C1 H6 X3N sing 421 n n C1 H7 X3N sing 422 n n C2 H3 X3N sing 423 n n N6 H8 X3N sing 424 n n N6 H9 X3N sing 425 n n N7 H10 X3N sing 426 n n C15 H11 X3N sing 427 n n C15 H12 X3N sing 428 n n C16 H13 X3N sing 429 n n C16 H14 X3N sing 430 n n C21 H15 X3N sing 431 n n C23 H24 X3N sing 432 n n C25 H16 X3N sing 433 n n C25 H17 X3N sing 434 n n C29 H18 X3N sing 435 n n # _atom_sites.entry_id 8TGD _atom_sites.fract_transf_matrix[1][1] 0.011607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 1501 1501 EDO EDO . F 3 EDO A 1 1502 1502 EDO EDO . G 3 EDO A 1 1503 1503 EDO EDO . H 3 EDO A 1 1504 1504 EDO EDO . I 3 EDO A 1 1505 1505 EDO EDO . J 3 EDO A 1 1506 1506 EDO EDO . K 3 EDO A 1 1507 1507 EDO EDO . L 3 EDO A 1 1508 1508 EDO EDO . M 3 EDO A 1 1509 1509 EDO EDO . N 3 EDO A 1 1510 1510 EDO EDO . O 4 X3N A 1 1511 2001 X3N GDC . P 5 ZWE A 1 1512 2002 ZWE LIG . Q 3 EDO C 1 1501 1501 EDO EDO . R 3 EDO C 1 1502 1502 EDO EDO . S 3 EDO C 1 1503 1503 EDO EDO . T 4 X3N C 1 1504 2001 X3N GDC . U 5 ZWE C 1 1505 2002 ZWE LIG . V 6 HOH A 1 1601 79 HOH HOH . V 6 HOH A 2 1602 76 HOH HOH . V 6 HOH A 3 1603 83 HOH HOH . V 6 HOH A 4 1604 53 HOH HOH . V 6 HOH A 5 1605 66 HOH HOH . V 6 HOH A 6 1606 42 HOH HOH . V 6 HOH A 7 1607 37 HOH HOH . V 6 HOH A 8 1608 1 HOH HOH . V 6 HOH A 9 1609 9 HOH HOH . V 6 HOH A 10 1610 59 HOH HOH . V 6 HOH A 11 1611 46 HOH HOH . V 6 HOH A 12 1612 86 HOH HOH . V 6 HOH A 13 1613 125 HOH HOH . V 6 HOH A 14 1614 52 HOH HOH . V 6 HOH A 15 1615 19 HOH HOH . V 6 HOH A 16 1616 70 HOH HOH . V 6 HOH A 17 1617 4 HOH HOH . V 6 HOH A 18 1618 99 HOH HOH . V 6 HOH A 19 1619 117 HOH HOH . V 6 HOH A 20 1620 6 HOH HOH . V 6 HOH A 21 1621 47 HOH HOH . V 6 HOH A 22 1622 71 HOH HOH . V 6 HOH A 23 1623 137 HOH HOH . V 6 HOH A 24 1624 88 HOH HOH . V 6 HOH A 25 1625 112 HOH HOH . V 6 HOH A 26 1626 110 HOH HOH . V 6 HOH A 27 1627 64 HOH HOH . V 6 HOH A 28 1628 114 HOH HOH . V 6 HOH A 29 1629 21 HOH HOH . V 6 HOH A 30 1630 65 HOH HOH . V 6 HOH A 31 1631 124 HOH HOH . V 6 HOH A 32 1632 85 HOH HOH . V 6 HOH A 33 1633 17 HOH HOH . V 6 HOH A 34 1634 31 HOH HOH . V 6 HOH A 35 1635 55 HOH HOH . V 6 HOH A 36 1636 43 HOH HOH . V 6 HOH A 37 1637 44 HOH HOH . V 6 HOH A 38 1638 48 HOH HOH . V 6 HOH A 39 1639 32 HOH HOH . V 6 HOH A 40 1640 119 HOH HOH . V 6 HOH A 41 1641 81 HOH HOH . V 6 HOH A 42 1642 77 HOH HOH . V 6 HOH A 43 1643 23 HOH HOH . V 6 HOH A 44 1644 10 HOH HOH . V 6 HOH A 45 1645 34 HOH HOH . V 6 HOH A 46 1646 49 HOH HOH . V 6 HOH A 47 1647 60 HOH HOH . V 6 HOH A 48 1648 78 HOH HOH . V 6 HOH A 49 1649 93 HOH HOH . V 6 HOH A 50 1650 72 HOH HOH . V 6 HOH A 51 1651 116 HOH HOH . V 6 HOH A 52 1652 30 HOH HOH . V 6 HOH A 53 1653 87 HOH HOH . V 6 HOH A 54 1654 14 HOH HOH . V 6 HOH A 55 1655 97 HOH HOH . V 6 HOH A 56 1656 35 HOH HOH . V 6 HOH A 57 1657 103 HOH HOH . V 6 HOH A 58 1658 40 HOH HOH . V 6 HOH A 59 1659 80 HOH HOH . V 6 HOH A 60 1660 68 HOH HOH . V 6 HOH A 61 1661 3 HOH HOH . V 6 HOH A 62 1662 18 HOH HOH . V 6 HOH A 63 1663 74 HOH HOH . V 6 HOH A 64 1664 57 HOH HOH . V 6 HOH A 65 1665 20 HOH HOH . V 6 HOH A 66 1666 115 HOH HOH . V 6 HOH A 67 1667 69 HOH HOH . V 6 HOH A 68 1668 11 HOH HOH . V 6 HOH A 69 1669 84 HOH HOH . V 6 HOH A 70 1670 28 HOH HOH . V 6 HOH A 71 1671 73 HOH HOH . V 6 HOH A 72 1672 15 HOH HOH . V 6 HOH A 73 1673 16 HOH HOH . V 6 HOH A 74 1674 22 HOH HOH . V 6 HOH A 75 1675 12 HOH HOH . V 6 HOH A 76 1676 96 HOH HOH . V 6 HOH A 77 1677 36 HOH HOH . V 6 HOH A 78 1678 62 HOH HOH . V 6 HOH A 79 1679 126 HOH HOH . V 6 HOH A 80 1680 26 HOH HOH . V 6 HOH A 81 1681 91 HOH HOH . V 6 HOH A 82 1682 25 HOH HOH . V 6 HOH A 83 1683 8 HOH HOH . V 6 HOH A 84 1684 5 HOH HOH . V 6 HOH A 85 1685 7 HOH HOH . V 6 HOH A 86 1686 128 HOH HOH . V 6 HOH A 87 1687 82 HOH HOH . V 6 HOH A 88 1688 94 HOH HOH . V 6 HOH A 89 1689 2 HOH HOH . V 6 HOH A 90 1690 134 HOH HOH . V 6 HOH A 91 1691 98 HOH HOH . V 6 HOH A 92 1692 90 HOH HOH . V 6 HOH A 93 1693 95 HOH HOH . V 6 HOH A 94 1694 54 HOH HOH . V 6 HOH A 95 1695 67 HOH HOH . V 6 HOH A 96 1696 118 HOH HOH . V 6 HOH A 97 1697 113 HOH HOH . V 6 HOH A 98 1698 63 HOH HOH . V 6 HOH A 99 1699 27 HOH HOH . V 6 HOH A 100 1700 41 HOH HOH . V 6 HOH A 101 1701 45 HOH HOH . V 6 HOH A 102 1702 107 HOH HOH . V 6 HOH A 103 1703 129 HOH HOH . V 6 HOH A 104 1704 38 HOH HOH . W 6 HOH B 1 601 121 HOH HOH . W 6 HOH B 2 602 136 HOH HOH . W 6 HOH B 3 603 29 HOH HOH . W 6 HOH B 4 604 75 HOH HOH . W 6 HOH B 5 605 106 HOH HOH . X 6 HOH C 1 1601 138 HOH HOH . X 6 HOH C 2 1602 108 HOH HOH . X 6 HOH C 3 1603 135 HOH HOH . X 6 HOH C 4 1604 139 HOH HOH . X 6 HOH C 5 1605 123 HOH HOH . X 6 HOH C 6 1606 102 HOH HOH . X 6 HOH C 7 1607 89 HOH HOH . X 6 HOH C 8 1608 104 HOH HOH . X 6 HOH C 9 1609 120 HOH HOH . X 6 HOH C 10 1610 61 HOH HOH . X 6 HOH C 11 1611 130 HOH HOH . X 6 HOH C 12 1612 50 HOH HOH . X 6 HOH C 13 1613 33 HOH HOH . X 6 HOH C 14 1614 133 HOH HOH . X 6 HOH C 15 1615 131 HOH HOH . X 6 HOH C 16 1616 92 HOH HOH . X 6 HOH C 17 1617 111 HOH HOH . X 6 HOH C 18 1618 109 HOH HOH . X 6 HOH C 19 1619 56 HOH HOH . X 6 HOH C 20 1620 105 HOH HOH . X 6 HOH C 21 1621 122 HOH HOH . X 6 HOH C 22 1622 39 HOH HOH . X 6 HOH C 23 1623 101 HOH HOH . X 6 HOH C 24 1624 100 HOH HOH . X 6 HOH C 25 1625 51 HOH HOH . X 6 HOH C 26 1626 127 HOH HOH . X 6 HOH C 27 1627 58 HOH HOH . X 6 HOH C 28 1628 13 HOH HOH . X 6 HOH C 29 1629 140 HOH HOH . X 6 HOH C 30 1630 24 HOH HOH . X 6 HOH C 31 1631 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X3N . . . T 4 36.502 2.374 167.458 1 110.48 ? C4 X3N 1504 C 1 HETATM 2 C C11 X3N . . . T 4 32.39 1.964 163.878 1 109.74 ? C11 X3N 1504 C 1 HETATM 3 C C8 X3N . . . T 4 34.146 0.906 165.783 1 109.88 ? C8 X3N 1504 C 1 HETATM 4 C C9 X3N . . . T 4 33.695 2.231 165.874 1 109.64 ? C9 X3N 1504 C 1 HETATM 5 C C10 X3N . . . T 4 32.846 2.736 164.947 1 109.58 ? C10 X3N 1504 C 1 HETATM 6 C C12 X3N . . . T 4 32.84 0.643 163.773 1 109.82 ? C12 X3N 1504 C 1 HETATM 7 C C13 X3N . . . T 4 33.704 0.085 164.732 1 109.91 ? C13 X3N 1504 C 1 HETATM 8 C C1 X3N . . . T 4 35.938 0.607 169.075 1 110.59 ? C1 X3N 1504 C 1 HETATM 9 C C2 X3N . . . T 4 35.403 1.382 167.863 1 110.43 ? C2 X3N 1504 C 1 HETATM 10 O O5 X3N . . . T 4 36.544 3.496 167.957 1 110.56 ? O5 X3N 1504 C 1 HETATM 11 N N6 X3N . . . T 4 37.401 1.98 166.519 1 110.44 ? N6 X3N 1504 C 1 HETATM 12 N N7 X3N . . . T 4 35.016 0.478 166.773 1 110.13 ? N7 X3N 1504 C 1 HETATM 13 O O14 X3N . . . T 4 32.401 -0.245 162.807 1 109.62 ? O14 X3N 1504 C 1 HETATM 14 C C15 X3N . . . T 4 32.346 0.248 161.499 1 109.59 ? C15 X3N 1504 C 1 HETATM 15 C C16 X3N . . . T 4 30.949 0.824 161.257 1 109.64 ? C16 X3N 1504 C 1 HETATM 16 N N17 X3N . . . T 4 30.856 2.128 161.872 1 109.73 ? N17 X3N 1504 C 1 HETATM 17 C C18 X3N . . . T 4 31.492 2.63 162.991 1 109.82 ? C18 X3N 1504 C 1 HETATM 18 N N19 X3N . . . T 4 31.157 3.93 163.202 1 110.11 ? N19 X3N 1504 C 1 HETATM 19 C C20 X3N . . . T 4 30.297 4.26 162.16 1 110.26 ? C20 X3N 1504 C 1 HETATM 20 C C21 X3N . . . T 4 30.101 3.157 161.321 1 109.99 ? C21 X3N 1504 C 1 HETATM 21 N N22 X3N . . . T 4 29.676 5.531 162.043 1 110.64 ? N22 X3N 1504 C 1 HETATM 22 C C23 X3N . . . T 4 29.898 6.691 162.949 1 110.77 ? C23 X3N 1504 C 1 HETATM 23 C C25 X3N . . . T 4 29.396 7.856 162.078 1 110.85 ? C25 X3N 1504 C 1 HETATM 24 O O26 X3N . . . T 4 28.674 7.282 161.003 1 110.98 ? O26 X3N 1504 C 1 HETATM 25 C C27 X3N . . . T 4 28.849 5.925 160.95 1 110.98 ? C27 X3N 1504 C 1 HETATM 26 O O28 X3N . . . T 4 28.319 5.27 160.052 1 111.22 ? O28 X3N 1504 C 1 HETATM 27 C C29 X3N . . . T 4 28.942 6.646 164.186 1 110.99 ? C29 X3N 1504 C 1 HETATM 28 F F30 X3N . . . T 4 29.508 6.116 165.276 1 111.07 ? F30 X3N 1504 C 1 HETATM 29 F F31 X3N . . . T 4 27.852 5.901 163.926 1 111.18 ? F31 X3N 1504 C 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #