data_8TGD # _model_server_result.job_id D4odDYQqvFsmJpvcn0h--A _model_server_result.datetime_utc '2025-01-23 05:43:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1508}' # _entry.id 8TGD # _exptl.entry_id 8TGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.86 _cell.angle_gamma 90 _cell.entry_id 8TGD _cell.length_a 86.154 _cell.length_b 124.502 _cell.length_c 165.418 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,V,W 1 1 C,D,Q,R,S,T,U,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 Q N N ? 3 R N N ? 3 S N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8TGD _atom_sites.fract_transf_matrix[1][1] 0.011607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 1501 1501 EDO EDO . F 3 EDO A 1 1502 1502 EDO EDO . G 3 EDO A 1 1503 1503 EDO EDO . H 3 EDO A 1 1504 1504 EDO EDO . I 3 EDO A 1 1505 1505 EDO EDO . J 3 EDO A 1 1506 1506 EDO EDO . K 3 EDO A 1 1507 1507 EDO EDO . L 3 EDO A 1 1508 1508 EDO EDO . M 3 EDO A 1 1509 1509 EDO EDO . N 3 EDO A 1 1510 1510 EDO EDO . O 4 X3N A 1 1511 2001 X3N GDC . P 5 ZWE A 1 1512 2002 ZWE LIG . Q 3 EDO C 1 1501 1501 EDO EDO . R 3 EDO C 1 1502 1502 EDO EDO . S 3 EDO C 1 1503 1503 EDO EDO . T 4 X3N C 1 1504 2001 X3N GDC . U 5 ZWE C 1 1505 2002 ZWE LIG . V 6 HOH A 1 1601 79 HOH HOH . V 6 HOH A 2 1602 76 HOH HOH . V 6 HOH A 3 1603 83 HOH HOH . V 6 HOH A 4 1604 53 HOH HOH . V 6 HOH A 5 1605 66 HOH HOH . V 6 HOH A 6 1606 42 HOH HOH . V 6 HOH A 7 1607 37 HOH HOH . V 6 HOH A 8 1608 1 HOH HOH . V 6 HOH A 9 1609 9 HOH HOH . V 6 HOH A 10 1610 59 HOH HOH . V 6 HOH A 11 1611 46 HOH HOH . V 6 HOH A 12 1612 86 HOH HOH . V 6 HOH A 13 1613 125 HOH HOH . V 6 HOH A 14 1614 52 HOH HOH . V 6 HOH A 15 1615 19 HOH HOH . V 6 HOH A 16 1616 70 HOH HOH . V 6 HOH A 17 1617 4 HOH HOH . V 6 HOH A 18 1618 99 HOH HOH . V 6 HOH A 19 1619 117 HOH HOH . V 6 HOH A 20 1620 6 HOH HOH . V 6 HOH A 21 1621 47 HOH HOH . V 6 HOH A 22 1622 71 HOH HOH . V 6 HOH A 23 1623 137 HOH HOH . V 6 HOH A 24 1624 88 HOH HOH . V 6 HOH A 25 1625 112 HOH HOH . V 6 HOH A 26 1626 110 HOH HOH . V 6 HOH A 27 1627 64 HOH HOH . V 6 HOH A 28 1628 114 HOH HOH . V 6 HOH A 29 1629 21 HOH HOH . V 6 HOH A 30 1630 65 HOH HOH . V 6 HOH A 31 1631 124 HOH HOH . V 6 HOH A 32 1632 85 HOH HOH . V 6 HOH A 33 1633 17 HOH HOH . V 6 HOH A 34 1634 31 HOH HOH . V 6 HOH A 35 1635 55 HOH HOH . V 6 HOH A 36 1636 43 HOH HOH . V 6 HOH A 37 1637 44 HOH HOH . V 6 HOH A 38 1638 48 HOH HOH . V 6 HOH A 39 1639 32 HOH HOH . V 6 HOH A 40 1640 119 HOH HOH . V 6 HOH A 41 1641 81 HOH HOH . V 6 HOH A 42 1642 77 HOH HOH . V 6 HOH A 43 1643 23 HOH HOH . V 6 HOH A 44 1644 10 HOH HOH . V 6 HOH A 45 1645 34 HOH HOH . V 6 HOH A 46 1646 49 HOH HOH . V 6 HOH A 47 1647 60 HOH HOH . V 6 HOH A 48 1648 78 HOH HOH . V 6 HOH A 49 1649 93 HOH HOH . V 6 HOH A 50 1650 72 HOH HOH . V 6 HOH A 51 1651 116 HOH HOH . V 6 HOH A 52 1652 30 HOH HOH . V 6 HOH A 53 1653 87 HOH HOH . V 6 HOH A 54 1654 14 HOH HOH . V 6 HOH A 55 1655 97 HOH HOH . V 6 HOH A 56 1656 35 HOH HOH . V 6 HOH A 57 1657 103 HOH HOH . V 6 HOH A 58 1658 40 HOH HOH . V 6 HOH A 59 1659 80 HOH HOH . V 6 HOH A 60 1660 68 HOH HOH . V 6 HOH A 61 1661 3 HOH HOH . V 6 HOH A 62 1662 18 HOH HOH . V 6 HOH A 63 1663 74 HOH HOH . V 6 HOH A 64 1664 57 HOH HOH . V 6 HOH A 65 1665 20 HOH HOH . V 6 HOH A 66 1666 115 HOH HOH . V 6 HOH A 67 1667 69 HOH HOH . V 6 HOH A 68 1668 11 HOH HOH . V 6 HOH A 69 1669 84 HOH HOH . V 6 HOH A 70 1670 28 HOH HOH . V 6 HOH A 71 1671 73 HOH HOH . V 6 HOH A 72 1672 15 HOH HOH . V 6 HOH A 73 1673 16 HOH HOH . V 6 HOH A 74 1674 22 HOH HOH . V 6 HOH A 75 1675 12 HOH HOH . V 6 HOH A 76 1676 96 HOH HOH . V 6 HOH A 77 1677 36 HOH HOH . V 6 HOH A 78 1678 62 HOH HOH . V 6 HOH A 79 1679 126 HOH HOH . V 6 HOH A 80 1680 26 HOH HOH . V 6 HOH A 81 1681 91 HOH HOH . V 6 HOH A 82 1682 25 HOH HOH . V 6 HOH A 83 1683 8 HOH HOH . V 6 HOH A 84 1684 5 HOH HOH . V 6 HOH A 85 1685 7 HOH HOH . V 6 HOH A 86 1686 128 HOH HOH . V 6 HOH A 87 1687 82 HOH HOH . V 6 HOH A 88 1688 94 HOH HOH . V 6 HOH A 89 1689 2 HOH HOH . V 6 HOH A 90 1690 134 HOH HOH . V 6 HOH A 91 1691 98 HOH HOH . V 6 HOH A 92 1692 90 HOH HOH . V 6 HOH A 93 1693 95 HOH HOH . V 6 HOH A 94 1694 54 HOH HOH . V 6 HOH A 95 1695 67 HOH HOH . V 6 HOH A 96 1696 118 HOH HOH . V 6 HOH A 97 1697 113 HOH HOH . V 6 HOH A 98 1698 63 HOH HOH . V 6 HOH A 99 1699 27 HOH HOH . V 6 HOH A 100 1700 41 HOH HOH . V 6 HOH A 101 1701 45 HOH HOH . V 6 HOH A 102 1702 107 HOH HOH . V 6 HOH A 103 1703 129 HOH HOH . V 6 HOH A 104 1704 38 HOH HOH . W 6 HOH B 1 601 121 HOH HOH . W 6 HOH B 2 602 136 HOH HOH . W 6 HOH B 3 603 29 HOH HOH . W 6 HOH B 4 604 75 HOH HOH . W 6 HOH B 5 605 106 HOH HOH . X 6 HOH C 1 1601 138 HOH HOH . X 6 HOH C 2 1602 108 HOH HOH . X 6 HOH C 3 1603 135 HOH HOH . X 6 HOH C 4 1604 139 HOH HOH . X 6 HOH C 5 1605 123 HOH HOH . X 6 HOH C 6 1606 102 HOH HOH . X 6 HOH C 7 1607 89 HOH HOH . X 6 HOH C 8 1608 104 HOH HOH . X 6 HOH C 9 1609 120 HOH HOH . X 6 HOH C 10 1610 61 HOH HOH . X 6 HOH C 11 1611 130 HOH HOH . X 6 HOH C 12 1612 50 HOH HOH . X 6 HOH C 13 1613 33 HOH HOH . X 6 HOH C 14 1614 133 HOH HOH . X 6 HOH C 15 1615 131 HOH HOH . X 6 HOH C 16 1616 92 HOH HOH . X 6 HOH C 17 1617 111 HOH HOH . X 6 HOH C 18 1618 109 HOH HOH . X 6 HOH C 19 1619 56 HOH HOH . X 6 HOH C 20 1620 105 HOH HOH . X 6 HOH C 21 1621 122 HOH HOH . X 6 HOH C 22 1622 39 HOH HOH . X 6 HOH C 23 1623 101 HOH HOH . X 6 HOH C 24 1624 100 HOH HOH . X 6 HOH C 25 1625 51 HOH HOH . X 6 HOH C 26 1626 127 HOH HOH . X 6 HOH C 27 1627 58 HOH HOH . X 6 HOH C 28 1628 13 HOH HOH . X 6 HOH C 29 1629 140 HOH HOH . X 6 HOH C 30 1630 24 HOH HOH . X 6 HOH C 31 1631 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 8.315 0.632 87.315 1 101.09 ? C1 EDO 1508 A 1 HETATM 2 O O1 EDO . . . L 3 7.912 0.815 88.669 1 101.12 ? O1 EDO 1508 A 1 HETATM 3 C C2 EDO . . . L 3 7.361 1.305 86.347 1 100.9 ? C2 EDO 1508 A 1 HETATM 4 O O2 EDO . . . L 3 6.012 1.014 86.676 1 100.77 ? O2 EDO 1508 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 4 #