data_8TH3 # _model_server_result.job_id wedjYgLfFi_tLjZ1s-43dQ _model_server_result.datetime_utc '2024-11-15 10:00:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8th3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1401}' # _entry.id 8TH3 # _exptl.entry_id 8TH3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TH3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 153 A CYS 18 1_555 A SG CYS 516 A CYS 1274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 236 A CYS 101 1_555 A SG CYS 315 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 25 C CYS 25 1_555 C SG CYS 99 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 23 D CYS 24 1_555 D SG CYS 88 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 374 n n CBA CAB Y01 sing 375 n n CBA CAN Y01 sing 376 n n CAN CAJ Y01 sing 377 n n CAJ CAO Y01 sing 378 n n CAO CBB Y01 sing 379 n n CBB CAC Y01 sing 380 n n CBB CBE Y01 sing 381 n n CBE CAP Y01 sing 382 n n CBE CBI Y01 sing 383 n n CAP CAQ Y01 sing 384 n n CAQ CBG Y01 sing 385 n n CBG CBI Y01 sing 386 n n CBG CBD Y01 sing 387 n n CBI CAE Y01 sing 388 n n CBI CAU Y01 sing 389 n n CAU CAS Y01 sing 390 n n CAS CBF Y01 sing 391 n n CBF CBD Y01 sing 392 n n CBF CBH Y01 sing 393 n n CBD CAK Y01 sing 394 n n CAK CAI Y01 sing 395 n n CAI CAZ Y01 doub 396 n n CAZ CAV Y01 sing 397 n n CAZ CBH Y01 sing 398 n n CAV CBC Y01 sing 399 n n CBH CAD Y01 sing 400 n n CBH CAT Y01 sing 401 n n CAT CAR Y01 sing 402 n n CAR CBC Y01 sing 403 n n CBC OAW Y01 sing 404 n n OAW CAY Y01 sing 405 n n CAY OAG Y01 doub 406 n n CAY CAM Y01 sing 407 n n CAM CAL Y01 sing 408 n n CAL CAX Y01 sing 409 n n CAX OAH Y01 sing 410 n n CAX OAF Y01 doub 411 n n CAA HAA1 Y01 sing 412 n n CAA HAA2 Y01 sing 413 n n CAA HAA3 Y01 sing 414 n n CBA HBA Y01 sing 415 n n CAB HAB1 Y01 sing 416 n n CAB HAB2 Y01 sing 417 n n CAB HAB3 Y01 sing 418 n n CAN HAN1 Y01 sing 419 n n CAN HAN2 Y01 sing 420 n n CAJ HAJ1 Y01 sing 421 n n CAJ HAJ2 Y01 sing 422 n n CAO HAO1 Y01 sing 423 n n CAO HAO2 Y01 sing 424 n n CBB HBB Y01 sing 425 n n CAC HAC1 Y01 sing 426 n n CAC HAC2 Y01 sing 427 n n CAC HAC3 Y01 sing 428 n n CBE HBE Y01 sing 429 n n CAP HAP1 Y01 sing 430 n n CAP HAP2 Y01 sing 431 n n CAQ HAQ1 Y01 sing 432 n n CAQ HAQ2 Y01 sing 433 n n CBG HBG Y01 sing 434 n n CBD HBD Y01 sing 435 n n CAE HAE1 Y01 sing 436 n n CAE HAE2 Y01 sing 437 n n CAE HAE3 Y01 sing 438 n n CAU HAU1 Y01 sing 439 n n CAU HAU2 Y01 sing 440 n n CAS HAS1 Y01 sing 441 n n CAS HAS2 Y01 sing 442 n n CBF HBF Y01 sing 443 n n CAK HAK1 Y01 sing 444 n n CAK HAK2 Y01 sing 445 n n CAI HAI Y01 sing 446 n n CAV HAV1 Y01 sing 447 n n CAV HAV2 Y01 sing 448 n n CBC HBC Y01 sing 449 n n CAD HAD1 Y01 sing 450 n n CAD HAD2 Y01 sing 451 n n CAD HAD3 Y01 sing 452 n n CAT HAT1 Y01 sing 453 n n CAT HAT2 Y01 sing 454 n n CAR HAR1 Y01 sing 455 n n CAR HAR2 Y01 sing 456 n n CAM HAM1 Y01 sing 457 n n CAM HAM2 Y01 sing 458 n n CAL HAL1 Y01 sing 459 n n CAL HAL2 Y01 sing 460 n n OAH HAH Y01 sing 461 n n # _atom_sites.entry_id 8TH3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 Y01 A 1 1401 1401 Y01 Y01 . F 4 Y01 A 1 1402 1501 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 4 117.58 128.65 97.286 1 55.16 ? CAA Y01 1401 A 1 HETATM 2 C CBA Y01 . . . E 4 116.864 127.486 97.964 1 54.77 ? CBA Y01 1401 A 1 HETATM 3 C CAB Y01 . . . E 4 117.685 126.207 97.83 1 55.01 ? CAB Y01 1401 A 1 HETATM 4 C CAN Y01 . . . E 4 115.451 127.268 97.417 1 59.26 ? CAN Y01 1401 A 1 HETATM 5 C CAJ Y01 . . . E 4 114.698 126.088 98.022 1 58.26 ? CAJ Y01 1401 A 1 HETATM 6 C CAO Y01 . . . E 4 113.255 125.977 97.534 1 55.88 ? CAO Y01 1401 A 1 HETATM 7 C CBB Y01 . . . E 4 112.214 126.754 98.355 1 56.59 ? CBB Y01 1401 A 1 HETATM 8 C CAC Y01 . . . E 4 111.989 128.129 97.73 1 49.86 ? CAC Y01 1401 A 1 HETATM 9 C CBE Y01 . . . E 4 110.928 125.922 98.525 1 58.37 ? CBE Y01 1401 A 1 HETATM 10 C CAP Y01 . . . E 4 111.233 124.463 98.965 1 53.21 ? CAP Y01 1401 A 1 HETATM 11 C CAQ Y01 . . . E 4 110.163 124.049 99.993 1 51.35 ? CAQ Y01 1401 A 1 HETATM 12 C CBG Y01 . . . E 4 109.071 125.09 99.8 1 52.6 ? CBG Y01 1401 A 1 HETATM 13 C CBI Y01 . . . E 4 109.834 126.393 99.523 1 54.59 ? CBI Y01 1401 A 1 HETATM 14 C CAE Y01 . . . E 4 110.477 126.957 100.796 1 49.42 ? CAE Y01 1401 A 1 HETATM 15 C CAU Y01 . . . E 4 108.778 127.344 98.964 1 57.29 ? CAU Y01 1401 A 1 HETATM 16 C CAS Y01 . . . E 4 107.66 127.591 99.976 1 57.46 ? CAS Y01 1401 A 1 HETATM 17 C CBF Y01 . . . E 4 106.973 126.311 100.452 1 56.72 ? CBF Y01 1401 A 1 HETATM 18 C CBD Y01 . . . E 4 107.973 125.215 100.85 1 56.34 ? CBD Y01 1401 A 1 HETATM 19 C CAK Y01 . . . E 4 107.213 123.904 101.025 1 55.08 ? CAK Y01 1401 A 1 HETATM 20 C CAI Y01 . . . E 4 105.9 124.075 101.717 1 54.88 ? CAI Y01 1401 A 1 HETATM 21 C CAZ Y01 . . . E 4 105.317 125.245 101.977 1 57.12 ? CAZ Y01 1401 A 1 HETATM 22 C CAV Y01 . . . E 4 103.985 125.288 102.683 1 57.28 ? CAV Y01 1401 A 1 HETATM 23 C CBH Y01 . . . E 4 105.937 126.572 101.569 1 54.44 ? CBH Y01 1401 A 1 HETATM 24 C CAD Y01 . . . E 4 106.579 127.216 102.805 1 51.65 ? CAD Y01 1401 A 1 HETATM 25 C CAT Y01 . . . E 4 104.854 127.518 101.004 1 53.66 ? CAT Y01 1401 A 1 HETATM 26 C CAR Y01 . . . E 4 103.564 127.568 101.809 1 53.08 ? CAR Y01 1401 A 1 HETATM 27 C CBC Y01 . . . E 4 103.002 126.169 101.924 1 55.17 ? CBC Y01 1401 A 1 HETATM 28 O OAW Y01 . . . E 4 101.743 126.268 102.608 1 58.48 ? OAW Y01 1401 A 1 HETATM 29 C CAY Y01 . . . E 4 100.627 125.953 101.953 1 59.72 ? CAY Y01 1401 A 1 HETATM 30 O OAG Y01 . . . E 4 100.607 125.227 100.99 1 56.51 ? OAG Y01 1401 A 1 HETATM 31 C CAM Y01 . . . E 4 99.426 126.622 102.566 1 58.94 ? CAM Y01 1401 A 1 HETATM 32 C CAL Y01 . . . E 4 99.443 128.134 102.453 1 58.39 ? CAL Y01 1401 A 1 HETATM 33 C CAX Y01 . . . E 4 99.314 128.677 101.017 1 59.54 ? CAX Y01 1401 A 1 HETATM 34 O OAH Y01 . . . E 4 98.252 128.393 100.427 1 54.29 ? OAH Y01 1401 A 1 HETATM 35 O OAF Y01 . . . E 4 100.258 129.349 100.557 1 59.78 ? OAF Y01 1401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 35 #