data_8THE # _model_server_result.job_id kl-ywEzz8qyPx2k01eByqg _model_server_result.datetime_utc '2024-10-25 20:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8the # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8THE # _exptl.entry_id 8THE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8THE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8THE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OH TYR 542 A TYR 529 1_555 D FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 459 n n CHA C4D HEM doub 460 n n CHA HHA HEM sing 461 n n CHB C4A HEM sing 462 n n CHB C1B HEM doub 463 n n CHB HHB HEM sing 464 n n CHC C4B HEM sing 465 n n CHC C1C HEM doub 466 n n CHC HHC HEM sing 467 n n CHD C4C HEM doub 468 n n CHD C1D HEM sing 469 n n CHD HHD HEM sing 470 n n C1A C2A HEM doub 471 n y C1A NA HEM sing 472 n y C2A C3A HEM sing 473 n y C2A CAA HEM sing 474 n n C3A C4A HEM doub 475 n y C3A CMA HEM sing 476 n n C4A NA HEM sing 477 n y CMA HMA HEM sing 478 n n CMA HMAA HEM sing 479 n n CMA HMAB HEM sing 480 n n CAA CBA HEM sing 481 n n CAA HAA HEM sing 482 n n CAA HAAA HEM sing 483 n n CBA CGA HEM sing 484 n n CBA HBA HEM sing 485 n n CBA HBAA HEM sing 486 n n CGA O1A HEM doub 487 n n CGA O2A HEM sing 488 n n C1B C2B HEM sing 489 n n C1B NB HEM sing 490 n n C2B C3B HEM doub 491 n n C2B CMB HEM sing 492 n n C3B C4B HEM sing 493 n n C3B CAB HEM sing 494 n n C4B NB HEM doub 495 n n CMB HMB HEM sing 496 n n CMB HMBA HEM sing 497 n n CMB HMBB HEM sing 498 n n CAB CBB HEM doub 499 n n CAB HAB HEM sing 500 n n CBB HBB HEM sing 501 n n CBB HBBA HEM sing 502 n n C1C C2C HEM sing 503 n y C1C NC HEM sing 504 n y C2C C3C HEM doub 505 n y C2C CMC HEM sing 506 n n C3C C4C HEM sing 507 n y C3C CAC HEM sing 508 n n C4C NC HEM sing 509 n y CMC HMC HEM sing 510 n n CMC HMCA HEM sing 511 n n CMC HMCB HEM sing 512 n n CAC CBC HEM doub 513 n n CAC HAC HEM sing 514 n n CBC HBC HEM sing 515 n n CBC HBCA HEM sing 516 n n C1D C2D HEM sing 517 n n C1D ND HEM doub 518 n n C2D C3D HEM doub 519 n n C2D CMD HEM sing 520 n n C3D C4D HEM sing 521 n n C3D CAD HEM sing 522 n n C4D ND HEM sing 523 n n CMD HMD HEM sing 524 n n CMD HMDA HEM sing 525 n n CMD HMDB HEM sing 526 n n CAD CBD HEM sing 527 n n CAD HAD HEM sing 528 n n CAD HADA HEM sing 529 n n CBD CGD HEM sing 530 n n CBD HBD HEM sing 531 n n CBD HBDA HEM sing 532 n n CGD O1D HEM doub 533 n n CGD O2D HEM sing 534 n n O2A H2A HEM sing 535 n n O2D H2D HEM sing 536 n n FE NA HEM sing 537 n n FE NB HEM sing 538 n n FE NC HEM sing 539 n n FE ND HEM sing 540 n n # _atom_sites.entry_id 8THE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HEM A 1 801 801 HEM HEM . E 5 CTQ A 1 802 901 CTQ LIG . F 6 HOH A 1 901 62 HOH HOH . F 6 HOH A 2 902 20 HOH HOH . F 6 HOH A 3 903 60 HOH HOH . F 6 HOH A 4 904 57 HOH HOH . F 6 HOH A 5 905 50 HOH HOH . F 6 HOH A 6 906 40 HOH HOH . F 6 HOH A 7 907 7 HOH HOH . F 6 HOH A 8 908 9 HOH HOH . F 6 HOH A 9 909 61 HOH HOH . F 6 HOH A 10 910 54 HOH HOH . F 6 HOH A 11 911 56 HOH HOH . F 6 HOH A 12 912 76 HOH HOH . F 6 HOH A 13 913 26 HOH HOH . F 6 HOH A 14 914 83 HOH HOH . F 6 HOH A 15 915 21 HOH HOH . F 6 HOH A 16 916 47 HOH HOH . F 6 HOH A 17 917 51 HOH HOH . F 6 HOH A 18 918 45 HOH HOH . F 6 HOH A 19 919 36 HOH HOH . F 6 HOH A 20 920 32 HOH HOH . F 6 HOH A 21 921 10 HOH HOH . F 6 HOH A 22 922 4 HOH HOH . F 6 HOH A 23 923 71 HOH HOH . F 6 HOH A 24 924 34 HOH HOH . F 6 HOH A 25 925 37 HOH HOH . F 6 HOH A 26 926 11 HOH HOH . F 6 HOH A 27 927 13 HOH HOH . F 6 HOH A 28 928 42 HOH HOH . F 6 HOH A 29 929 8 HOH HOH . F 6 HOH A 30 930 22 HOH HOH . F 6 HOH A 31 931 15 HOH HOH . F 6 HOH A 32 932 29 HOH HOH . F 6 HOH A 33 933 28 HOH HOH . F 6 HOH A 34 934 12 HOH HOH . F 6 HOH A 35 935 6 HOH HOH . F 6 HOH A 36 936 14 HOH HOH . F 6 HOH A 37 937 58 HOH HOH . F 6 HOH A 38 938 44 HOH HOH . F 6 HOH A 39 939 31 HOH HOH . F 6 HOH A 40 940 25 HOH HOH . F 6 HOH A 41 941 59 HOH HOH . F 6 HOH A 42 942 39 HOH HOH . F 6 HOH A 43 943 38 HOH HOH . F 6 HOH A 44 944 33 HOH HOH . F 6 HOH A 45 945 5 HOH HOH . F 6 HOH A 46 946 41 HOH HOH . F 6 HOH A 47 947 55 HOH HOH . F 6 HOH A 48 948 70 HOH HOH . F 6 HOH A 49 949 17 HOH HOH . F 6 HOH A 50 950 24 HOH HOH . F 6 HOH A 51 951 30 HOH HOH . F 6 HOH A 52 952 80 HOH HOH . F 6 HOH A 53 953 18 HOH HOH . F 6 HOH A 54 954 48 HOH HOH . F 6 HOH A 55 955 23 HOH HOH . F 6 HOH A 56 956 35 HOH HOH . F 6 HOH A 57 957 74 HOH HOH . F 6 HOH A 58 958 16 HOH HOH . F 6 HOH A 59 959 27 HOH HOH . F 6 HOH A 60 960 53 HOH HOH . F 6 HOH A 61 961 46 HOH HOH . F 6 HOH A 62 962 49 HOH HOH . F 6 HOH A 63 963 19 HOH HOH . F 6 HOH A 64 964 52 HOH HOH . F 6 HOH A 65 965 81 HOH HOH . F 6 HOH A 66 966 63 HOH HOH . F 6 HOH A 67 967 75 HOH HOH . G 6 HOH H 1 301 78 HOH HOH . G 6 HOH H 2 302 65 HOH HOH . G 6 HOH H 3 303 79 HOH HOH . G 6 HOH H 4 304 68 HOH HOH . G 6 HOH H 5 305 77 HOH HOH . G 6 HOH H 6 306 67 HOH HOH . G 6 HOH H 7 307 66 HOH HOH . G 6 HOH H 8 308 64 HOH HOH . G 6 HOH H 9 309 69 HOH HOH . G 6 HOH H 10 310 72 HOH HOH . H 6 HOH L 1 301 73 HOH HOH . H 6 HOH L 2 302 3 HOH HOH . H 6 HOH L 3 303 2 HOH HOH . H 6 HOH L 4 304 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 187.968 188.252 199.496 1 12.44 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . D 4 191.706 185.169 199.098 1 16.26 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . D 4 194.064 188.349 196.292 1 13.56 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . D 4 190.409 191.486 196.815 1 15.05 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . D 4 188.763 187.133 199.631 1 15.59 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . D 4 188.439 185.928 200.367 1 15.17 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . D 4 189.467 185.084 200.255 1 16.28 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . D 4 190.488 185.716 199.447 1 14.16 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . D 4 189.556 183.676 200.88 1 11.62 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . D 4 187.13 185.662 201.141 1 12.47 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . D 4 186.077 185.142 200.167 1 15.54 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . D 4 184.806 184.807 200.9 1 17.62 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . D 4 184.775 184.942 202.148 1 24.27 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . D 4 183.82 184.402 200.235 1 23.88 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . D 4 192.647 185.735 198.262 1 11.24 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . D 4 193.841 185.087 197.757 1 14.6 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . D 4 194.495 185.969 196.978 1 16.79 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . D 4 193.73 187.198 196.972 1 15.07 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . D 4 194.223 183.628 198.101 1 13.34 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . D 4 195.82 185.821 196.186 1 18.18 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . D 4 196.583 184.723 196.16 1 22.13 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . D 4 193.28 189.476 196.175 1 13.41 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . D 4 193.591 190.658 195.397 1 17.38 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . D 4 192.573 191.528 195.543 1 13.13 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . D 4 191.597 190.915 196.418 1 11.62 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . D 4 194.889 190.813 194.569 1 16.37 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . D 4 192.365 192.944 194.946 1 15.99 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . D 4 193.223 193.568 194.132 1 22.14 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . D 4 189.429 190.89 197.577 1 12.98 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . D 4 188.167 191.486 197.951 1 11.43 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . D 4 187.489 190.604 198.684 1 14.15 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . D 4 188.297 189.405 198.812 1 14.98 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . D 4 187.685 192.9 197.566 1 11.91 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . D 4 186.092 190.85 199.288 1 15.37 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . D 4 185.074 189.915 198.648 1 12.34 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . D 4 183.696 190.304 199.104 1 14.51 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . D 4 183.105 189.562 199.928 1 23.82 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . D 4 183.194 191.361 198.648 1 24.31 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . D 4 190.022 186.966 199.084 1 14.41 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . D 4 192.613 187.021 197.763 1 10.56 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . D 4 192.058 189.668 196.782 1 12.94 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . D 4 189.475 189.62 198.12 1 14.25 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . D 4 191.068 188.339 197.989 1 35.25 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #