data_8THG # _model_server_result.job_id uZ18o3zsDumlrQtUVwBv-A _model_server_result.datetime_utc '2024-11-04 22:49:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8thg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2004}' # _entry.id 8THG # _exptl.entry_id 8THG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8THG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8THG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 T N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 2003 NAG 4 n D NAG 2 D 2 NAG A 2004 NAG 4 n E NAG 1 E 1 NAG A 2005 NAG 4 n E NAG 2 E 2 NAG A 2006 NAG 4 n F NAG 1 F 1 NAG B 304 NAG 4 n F NAG 2 F 2 NAG B 305 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 275 A CYS 275 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 315 A CYS 315 1_555 A SG CYS 330 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 895 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 897 A CYS 897 1_555 A SG CYS 903 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 935 A CYS 935 1_555 A SG CYS 944 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 1350 A CYS 1350 1_555 A SG CYS 1370 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 1715 A CYS 1715 1_555 A SG CYS 1730 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 283 A ASN 283 1_555 G C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 1352 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 1366 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 1375 A ASN 1375 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 U C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 V C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 W C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 790 n n CBA CAB Y01 sing 791 n n CBA CAN Y01 sing 792 n n CAN CAJ Y01 sing 793 n n CAJ CAO Y01 sing 794 n n CAO CBB Y01 sing 795 n n CBB CAC Y01 sing 796 n n CBB CBE Y01 sing 797 n n CBE CAP Y01 sing 798 n n CBE CBI Y01 sing 799 n n CAP CAQ Y01 sing 800 n n CAQ CBG Y01 sing 801 n n CBG CBI Y01 sing 802 n n CBG CBD Y01 sing 803 n n CBI CAE Y01 sing 804 n n CBI CAU Y01 sing 805 n n CAU CAS Y01 sing 806 n n CAS CBF Y01 sing 807 n n CBF CBD Y01 sing 808 n n CBF CBH Y01 sing 809 n n CBD CAK Y01 sing 810 n n CAK CAI Y01 sing 811 n n CAI CAZ Y01 doub 812 n n CAZ CAV Y01 sing 813 n n CAZ CBH Y01 sing 814 n n CAV CBC Y01 sing 815 n n CBH CAD Y01 sing 816 n n CBH CAT Y01 sing 817 n n CAT CAR Y01 sing 818 n n CAR CBC Y01 sing 819 n n CBC OAW Y01 sing 820 n n OAW CAY Y01 sing 821 n n CAY OAG Y01 doub 822 n n CAY CAM Y01 sing 823 n n CAM CAL Y01 sing 824 n n CAL CAX Y01 sing 825 n n CAX OAH Y01 sing 826 n n CAX OAF Y01 doub 827 n n CAA HAA1 Y01 sing 828 n n CAA HAA2 Y01 sing 829 n n CAA HAA3 Y01 sing 830 n n CBA HBA Y01 sing 831 n n CAB HAB1 Y01 sing 832 n n CAB HAB2 Y01 sing 833 n n CAB HAB3 Y01 sing 834 n n CAN HAN1 Y01 sing 835 n n CAN HAN2 Y01 sing 836 n n CAJ HAJ1 Y01 sing 837 n n CAJ HAJ2 Y01 sing 838 n n CAO HAO1 Y01 sing 839 n n CAO HAO2 Y01 sing 840 n n CBB HBB Y01 sing 841 n n CAC HAC1 Y01 sing 842 n n CAC HAC2 Y01 sing 843 n n CAC HAC3 Y01 sing 844 n n CBE HBE Y01 sing 845 n n CAP HAP1 Y01 sing 846 n n CAP HAP2 Y01 sing 847 n n CAQ HAQ1 Y01 sing 848 n n CAQ HAQ2 Y01 sing 849 n n CBG HBG Y01 sing 850 n n CBD HBD Y01 sing 851 n n CAE HAE1 Y01 sing 852 n n CAE HAE2 Y01 sing 853 n n CAE HAE3 Y01 sing 854 n n CAU HAU1 Y01 sing 855 n n CAU HAU2 Y01 sing 856 n n CAS HAS1 Y01 sing 857 n n CAS HAS2 Y01 sing 858 n n CBF HBF Y01 sing 859 n n CAK HAK1 Y01 sing 860 n n CAK HAK2 Y01 sing 861 n n CAI HAI Y01 sing 862 n n CAV HAV1 Y01 sing 863 n n CAV HAV2 Y01 sing 864 n n CBC HBC Y01 sing 865 n n CAD HAD1 Y01 sing 866 n n CAD HAD2 Y01 sing 867 n n CAD HAD3 Y01 sing 868 n n CAT HAT1 Y01 sing 869 n n CAT HAT2 Y01 sing 870 n n CAR HAR1 Y01 sing 871 n n CAR HAR2 Y01 sing 872 n n CAM HAM1 Y01 sing 873 n n CAM HAM2 Y01 sing 874 n n CAL HAL1 Y01 sing 875 n n CAL HAL2 Y01 sing 876 n n OAH HAH Y01 sing 877 n n # _atom_sites.entry_id 8THG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 2001 2001 NAG NAG . H 5 NAG A 1 2002 2002 NAG NAG . I 6 657 A 1 2003 2007 657 LIG . J 7 Y01 A 1 2004 2002 Y01 Y01 . K 7 Y01 A 1 2005 2003 Y01 Y01 . L 8 LPE A 1 2006 2004 LPE LPE . M 8 LPE A 1 2007 2005 LPE LPE . N 9 PCW A 1 2008 2006 PCW PCW . O 10 P5S A 1 2009 2007 P5S P5S . P 8 LPE A 1 2010 2008 LPE LPE . Q 8 LPE A 1 2011 2009 LPE LPE . R 8 LPE A 1 2012 2010 LPE LPE . S 8 LPE A 1 2013 2011 LPE LPE . T 7 Y01 A 1 2014 2012 Y01 Y01 . U 5 NAG B 1 301 301 NAG NAG . V 5 NAG B 1 302 302 NAG NAG . W 5 NAG B 1 303 303 NAG NAG . X 11 HOH A 1 2101 1 HOH HOH . X 11 HOH A 2 2102 3 HOH HOH . X 11 HOH A 3 2103 2 HOH HOH . X 11 HOH A 4 2104 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 7 157.483 119.026 123.647 1 143.92 ? CAA Y01 2004 A 1 HETATM 2 C CBA Y01 . . . J 7 157.516 117.629 124.244 1 147.56 ? CBA Y01 2004 A 1 HETATM 3 C CAB Y01 . . . J 7 158.638 117.514 125.261 1 146.04 ? CAB Y01 2004 A 1 HETATM 4 C CAN Y01 . . . J 7 156.173 117.258 124.867 1 146.33 ? CAN Y01 2004 A 1 HETATM 5 C CAJ Y01 . . . J 7 155.065 116.937 123.9 1 143.66 ? CAJ Y01 2004 A 1 HETATM 6 C CAO Y01 . . . J 7 155.465 115.937 122.855 1 144.63 ? CAO Y01 2004 A 1 HETATM 7 C CBB Y01 . . . J 7 155.776 116.527 121.472 1 146.22 ? CBB Y01 2004 A 1 HETATM 8 C CAC Y01 . . . J 7 156.992 115.847 120.86 1 144.61 ? CAC Y01 2004 A 1 HETATM 9 C CBE Y01 . . . J 7 154.541 116.413 120.57 1 146.69 ? CBE Y01 2004 A 1 HETATM 10 C CAP Y01 . . . J 7 153.27 116.967 121.259 1 145.37 ? CAP Y01 2004 A 1 HETATM 11 C CAQ Y01 . . . J 7 152.245 117.163 120.131 1 143 ? CAQ Y01 2004 A 1 HETATM 12 C CBG Y01 . . . J 7 153.017 116.827 118.856 1 143.79 ? CBG Y01 2004 A 1 HETATM 13 C CBI Y01 . . . J 7 154.489 117.126 119.191 1 143.85 ? CBI Y01 2004 A 1 HETATM 14 C CAE Y01 . . . J 7 154.787 118.624 119.346 1 142.73 ? CAE Y01 2004 A 1 HETATM 15 C CAU Y01 . . . J 7 155.324 116.539 118.053 1 143.59 ? CAU Y01 2004 A 1 HETATM 16 C CAS Y01 . . . J 7 154.893 117.09 116.687 1 139.38 ? CAS Y01 2004 A 1 HETATM 17 C CBF Y01 . . . J 7 153.4 116.883 116.389 1 141.66 ? CBF Y01 2004 A 1 HETATM 18 C CBD Y01 . . . J 7 152.523 117.401 117.542 1 144 ? CBD Y01 2004 A 1 HETATM 19 C CAK Y01 . . . J 7 151.064 117.017 117.335 1 145.04 ? CAK Y01 2004 A 1 HETATM 20 C CAI Y01 . . . J 7 150.675 116.926 115.897 1 143.93 ? CAI Y01 2004 A 1 HETATM 21 C CAZ Y01 . . . J 7 151.442 117.29 114.887 1 141.27 ? CAZ Y01 2004 A 1 HETATM 22 C CAV Y01 . . . J 7 150.847 117.53 113.521 1 139.17 ? CAV Y01 2004 A 1 HETATM 23 C CBH Y01 . . . J 7 152.951 117.446 115.012 1 143.7 ? CBH Y01 2004 A 1 HETATM 24 C CAD Y01 . . . J 7 153.309 118.933 114.858 1 142.01 ? CAD Y01 2004 A 1 HETATM 25 C CAT Y01 . . . J 7 153.61 116.646 113.869 1 147.32 ? CAT Y01 2004 A 1 HETATM 26 C CAR Y01 . . . J 7 152.988 116.913 112.496 1 147.33 ? CAR Y01 2004 A 1 HETATM 27 C CBC Y01 . . . J 7 151.509 116.642 112.509 1 144.7 ? CBC Y01 2004 A 1 HETATM 28 O OAW Y01 . . . J 7 150.917 116.953 111.218 1 148.36 ? OAW Y01 2004 A 1 HETATM 29 C CAY Y01 . . . J 7 150.401 115.951 110.52 1 147.98 ? CAY Y01 2004 A 1 HETATM 30 O OAG Y01 . . . J 7 150.903 115.51 109.527 1 151.7 ? OAG Y01 2004 A 1 HETATM 31 C CAM Y01 . . . J 7 149.122 115.432 111.125 1 145.34 ? CAM Y01 2004 A 1 HETATM 32 C CAL Y01 . . . J 7 147.841 115.958 110.504 1 146.01 ? CAL Y01 2004 A 1 HETATM 33 C CAX Y01 . . . J 7 146.725 116.225 111.499 1 148.72 ? CAX Y01 2004 A 1 HETATM 34 O OAH Y01 . . . J 7 146.467 117.41 111.792 1 145.95 ? OAH Y01 2004 A 1 HETATM 35 O OAF Y01 . . . J 7 146.121 115.248 111.979 1 150.08 ? OAF Y01 2004 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #