data_8THH # _model_server_result.job_id vhnTg3bdyum2Yq6AW7cMLQ _model_server_result.datetime_utc '2024-12-27 01:14:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8thh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":2003}' # _entry.id 8THH # _exptl.entry_id 8THH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.091 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-6-(2,3-dichlorophenyl)-1,2,4-triazine-3,5-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8THH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8THH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG 4 n F NAG 1 F 1 NAG F 1 NAG 4 n F NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 275 A CYS 275 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 315 A CYS 315 1_555 A SG CYS 330 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 895 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 897 A CYS 897 1_555 A SG CYS 903 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 935 A CYS 935 1_555 A SG CYS 944 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 1350 A CYS 1350 1_555 A SG CYS 1370 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 1715 A CYS 1715 1_555 A SG CYS 1730 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 283 A ASN 283 1_555 G C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 1352 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 1366 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 1375 A ASN 1375 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 Y C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 Z C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 AA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C9 H7 Cl2 N5' _chem_comp.formula_weight 256.091 _chem_comp.id IYJ _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-6-(2,3-dichlorophenyl)-1,2,4-triazine-3,5-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N06 N03 IYJ doub 173 n y N06 C16 IYJ sing 174 n y N03 C09 IYJ sing 175 n y N07 C16 IYJ sing 176 n n C16 N04 IYJ doub 177 n y CL01 C10 IYJ sing 178 n n C09 C08 IYJ sing 179 n n C09 C12 IYJ doub 180 n y C10 C08 IYJ doub 181 n y C10 C13 IYJ sing 182 n y C08 C11 IYJ sing 183 n y CL02 C13 IYJ sing 184 n n C13 C15 IYJ doub 185 n y C11 C14 IYJ doub 186 n y N04 C12 IYJ sing 187 n y C15 C14 IYJ sing 188 n y C12 N05 IYJ sing 189 n n C15 H1 IYJ sing 190 n n C11 H2 IYJ sing 191 n n C14 H3 IYJ sing 192 n n N05 H4 IYJ sing 193 n n N05 H5 IYJ sing 194 n n N07 H6 IYJ sing 195 n n N07 H7 IYJ sing 196 n n # _atom_sites.entry_id 8THH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 2001 2001 NAG NAG . H 5 NAG A 1 2002 2008 NAG NAG . I 6 IYJ A 1 2003 2001 IYJ LIG . J 6 IYJ A 1 2004 2002 IYJ LIG . K 7 Y01 A 1 2005 2003 Y01 Y01 . L 7 Y01 A 1 2006 2004 Y01 Y01 . M 7 Y01 A 1 2007 2005 Y01 Y01 . N 8 LPE A 1 2008 2006 LPE LPE . O 9 PCW A 1 2009 2007 PCW PCW . P 8 LPE A 1 2010 2008 LPE LPE . Q 9 PCW A 1 2011 2009 PCW PCW . R 10 P5S A 1 2012 2010 P5S P5S . S 9 PCW A 1 2013 2011 PCW PCW . T 8 LPE A 1 2014 2012 LPE LPE . U 8 LPE A 1 2015 2013 LPE LPE . V 8 LPE A 1 2016 2014 LPE LPE . W 8 LPE A 1 2017 2015 LPE LPE . X 7 Y01 A 1 2018 2016 Y01 Y01 . Y 5 NAG B 1 301 301 NAG NAG . Z 5 NAG B 1 302 302 NAG NAG . AA 5 NAG B 1 303 303 NAG NAG . BA 11 HOH A 1 2101 9 HOH HOH . BA 11 HOH A 2 2102 2 HOH HOH . BA 11 HOH A 3 2103 7 HOH HOH . BA 11 HOH A 4 2104 6 HOH HOH . BA 11 HOH A 5 2105 4 HOH HOH . BA 11 HOH A 6 2106 8 HOH HOH . BA 11 HOH A 7 2107 5 HOH HOH . BA 11 HOH A 8 2108 1 HOH HOH . BA 11 HOH A 9 2109 10 HOH HOH . CA 11 HOH B 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 IYJ . . . I 6 133.937 129.957 132.703 1 101.82 ? C10 IYJ 2003 A 1 HETATM 2 C C13 IYJ . . . I 6 132.922 129.071 133.021 1 101.63 ? C13 IYJ 2003 A 1 HETATM 3 C C15 IYJ . . . I 6 133.22 127.768 133.374 1 93.89 ? C15 IYJ 2003 A 1 HETATM 4 C C08 IYJ . . . I 6 135.259 129.539 132.743 1 98 ? C08 IYJ 2003 A 1 HETATM 5 C C09 IYJ . . . I 6 136.399 130.495 132.394 1 106.34 ? C09 IYJ 2003 A 1 HETATM 6 C C11 IYJ . . . I 6 135.556 128.233 133.093 1 90.48 ? C11 IYJ 2003 A 1 HETATM 7 C C12 IYJ . . . I 6 136.928 131.307 133.384 1 103.74 ? C12 IYJ 2003 A 1 HETATM 8 C C14 IYJ . . . I 6 134.538 127.349 133.408 1 97.4 ? C14 IYJ 2003 A 1 HETATM 9 C C16 IYJ . . . I 6 138.27 132.072 131.895 1 95.99 ? C16 IYJ 2003 A 1 HETATM 10 N N03 IYJ . . . I 6 136.837 130.496 131.145 1 102.12 ? N03 IYJ 2003 A 1 HETATM 11 N N04 IYJ . . . I 6 137.914 132.145 133.14 1 98.96 ? N04 IYJ 2003 A 1 HETATM 12 N N05 IYJ . . . I 6 136.384 131.233 134.727 1 97.25 ? N05 IYJ 2003 A 1 HETATM 13 N N06 IYJ . . . I 6 137.861 131.359 130.864 1 98.12 ? N06 IYJ 2003 A 1 HETATM 14 N N07 IYJ . . . I 6 139.334 132.884 131.339 1 101.43 ? N07 IYJ 2003 A 1 HETATM 15 CL CL01 IYJ . . . I 6 133.535 131.635 132.254 1 104.83 ? CL01 IYJ 2003 A 1 HETATM 16 CL CL02 IYJ . . . I 6 131.224 129.613 132.972 1 117.48 ? CL02 IYJ 2003 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 436 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #