data_8THH # _model_server_result.job_id YXiGGycJdA-ZBIjmnExBSA _model_server_result.datetime_utc '2024-10-26 02:40:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8thh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2006}' # _entry.id 8THH # _exptl.entry_id 8THH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8THH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8THH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 L N N ? 7 M N N ? 7 X N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG 4 n F NAG 1 F 1 NAG F 1 NAG 4 n F NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 275 A CYS 275 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 315 A CYS 315 1_555 A SG CYS 330 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 895 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 897 A CYS 897 1_555 A SG CYS 903 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 935 A CYS 935 1_555 A SG CYS 944 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 1350 A CYS 1350 1_555 A SG CYS 1370 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 1715 A CYS 1715 1_555 A SG CYS 1730 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 283 A ASN 283 1_555 G C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 1352 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 1366 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 1375 A ASN 1375 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 Y C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 Z C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 AA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 793 n n CBA CAB Y01 sing 794 n n CBA CAN Y01 sing 795 n n CAN CAJ Y01 sing 796 n n CAJ CAO Y01 sing 797 n n CAO CBB Y01 sing 798 n n CBB CAC Y01 sing 799 n n CBB CBE Y01 sing 800 n n CBE CAP Y01 sing 801 n n CBE CBI Y01 sing 802 n n CAP CAQ Y01 sing 803 n n CAQ CBG Y01 sing 804 n n CBG CBI Y01 sing 805 n n CBG CBD Y01 sing 806 n n CBI CAE Y01 sing 807 n n CBI CAU Y01 sing 808 n n CAU CAS Y01 sing 809 n n CAS CBF Y01 sing 810 n n CBF CBD Y01 sing 811 n n CBF CBH Y01 sing 812 n n CBD CAK Y01 sing 813 n n CAK CAI Y01 sing 814 n n CAI CAZ Y01 doub 815 n n CAZ CAV Y01 sing 816 n n CAZ CBH Y01 sing 817 n n CAV CBC Y01 sing 818 n n CBH CAD Y01 sing 819 n n CBH CAT Y01 sing 820 n n CAT CAR Y01 sing 821 n n CAR CBC Y01 sing 822 n n CBC OAW Y01 sing 823 n n OAW CAY Y01 sing 824 n n CAY OAG Y01 doub 825 n n CAY CAM Y01 sing 826 n n CAM CAL Y01 sing 827 n n CAL CAX Y01 sing 828 n n CAX OAH Y01 sing 829 n n CAX OAF Y01 doub 830 n n CAA HAA1 Y01 sing 831 n n CAA HAA2 Y01 sing 832 n n CAA HAA3 Y01 sing 833 n n CBA HBA Y01 sing 834 n n CAB HAB1 Y01 sing 835 n n CAB HAB2 Y01 sing 836 n n CAB HAB3 Y01 sing 837 n n CAN HAN1 Y01 sing 838 n n CAN HAN2 Y01 sing 839 n n CAJ HAJ1 Y01 sing 840 n n CAJ HAJ2 Y01 sing 841 n n CAO HAO1 Y01 sing 842 n n CAO HAO2 Y01 sing 843 n n CBB HBB Y01 sing 844 n n CAC HAC1 Y01 sing 845 n n CAC HAC2 Y01 sing 846 n n CAC HAC3 Y01 sing 847 n n CBE HBE Y01 sing 848 n n CAP HAP1 Y01 sing 849 n n CAP HAP2 Y01 sing 850 n n CAQ HAQ1 Y01 sing 851 n n CAQ HAQ2 Y01 sing 852 n n CBG HBG Y01 sing 853 n n CBD HBD Y01 sing 854 n n CAE HAE1 Y01 sing 855 n n CAE HAE2 Y01 sing 856 n n CAE HAE3 Y01 sing 857 n n CAU HAU1 Y01 sing 858 n n CAU HAU2 Y01 sing 859 n n CAS HAS1 Y01 sing 860 n n CAS HAS2 Y01 sing 861 n n CBF HBF Y01 sing 862 n n CAK HAK1 Y01 sing 863 n n CAK HAK2 Y01 sing 864 n n CAI HAI Y01 sing 865 n n CAV HAV1 Y01 sing 866 n n CAV HAV2 Y01 sing 867 n n CBC HBC Y01 sing 868 n n CAD HAD1 Y01 sing 869 n n CAD HAD2 Y01 sing 870 n n CAD HAD3 Y01 sing 871 n n CAT HAT1 Y01 sing 872 n n CAT HAT2 Y01 sing 873 n n CAR HAR1 Y01 sing 874 n n CAR HAR2 Y01 sing 875 n n CAM HAM1 Y01 sing 876 n n CAM HAM2 Y01 sing 877 n n CAL HAL1 Y01 sing 878 n n CAL HAL2 Y01 sing 879 n n OAH HAH Y01 sing 880 n n # _atom_sites.entry_id 8THH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 2001 2001 NAG NAG . H 5 NAG A 1 2002 2008 NAG NAG . I 6 IYJ A 1 2003 2001 IYJ LIG . J 6 IYJ A 1 2004 2002 IYJ LIG . K 7 Y01 A 1 2005 2003 Y01 Y01 . L 7 Y01 A 1 2006 2004 Y01 Y01 . M 7 Y01 A 1 2007 2005 Y01 Y01 . N 8 LPE A 1 2008 2006 LPE LPE . O 9 PCW A 1 2009 2007 PCW PCW . P 8 LPE A 1 2010 2008 LPE LPE . Q 9 PCW A 1 2011 2009 PCW PCW . R 10 P5S A 1 2012 2010 P5S P5S . S 9 PCW A 1 2013 2011 PCW PCW . T 8 LPE A 1 2014 2012 LPE LPE . U 8 LPE A 1 2015 2013 LPE LPE . V 8 LPE A 1 2016 2014 LPE LPE . W 8 LPE A 1 2017 2015 LPE LPE . X 7 Y01 A 1 2018 2016 Y01 Y01 . Y 5 NAG B 1 301 301 NAG NAG . Z 5 NAG B 1 302 302 NAG NAG . AA 5 NAG B 1 303 303 NAG NAG . BA 11 HOH A 1 2101 9 HOH HOH . BA 11 HOH A 2 2102 2 HOH HOH . BA 11 HOH A 3 2103 7 HOH HOH . BA 11 HOH A 4 2104 6 HOH HOH . BA 11 HOH A 5 2105 4 HOH HOH . BA 11 HOH A 6 2106 8 HOH HOH . BA 11 HOH A 7 2107 5 HOH HOH . BA 11 HOH A 8 2108 1 HOH HOH . BA 11 HOH A 9 2109 10 HOH HOH . CA 11 HOH B 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . L 7 157.98 119.876 123.362 1 119.19 ? CAA Y01 2006 A 1 HETATM 2 C CBA Y01 . . . L 7 157.564 118.543 123.958 1 122.24 ? CBA Y01 2006 A 1 HETATM 3 C CAB Y01 . . . L 7 157.017 118.742 125.364 1 116.58 ? CAB Y01 2006 A 1 HETATM 4 C CAN Y01 . . . L 7 156.58 117.817 123.04 1 119.78 ? CAN Y01 2006 A 1 HETATM 5 C CAJ Y01 . . . L 7 155.308 117.304 123.669 1 117.59 ? CAJ Y01 2006 A 1 HETATM 6 C CAO Y01 . . . L 7 154.238 117.02 122.653 1 114.66 ? CAO Y01 2006 A 1 HETATM 7 C CBB Y01 . . . L 7 154.715 116.277 121.397 1 119.17 ? CBB Y01 2006 A 1 HETATM 8 C CAC Y01 . . . L 7 155.448 115 121.793 1 114.48 ? CAC Y01 2006 A 1 HETATM 9 C CBE Y01 . . . L 7 153.558 116.015 120.416 1 120.36 ? CBE Y01 2006 A 1 HETATM 10 C CAP Y01 . . . L 7 152.148 116.315 120.991 1 118.49 ? CAP Y01 2006 A 1 HETATM 11 C CAQ Y01 . . . L 7 151.211 116.449 119.775 1 118.72 ? CAQ Y01 2006 A 1 HETATM 12 C CBG Y01 . . . L 7 152.135 116.329 118.566 1 115.79 ? CBG Y01 2006 A 1 HETATM 13 C CBI Y01 . . . L 7 153.515 116.786 119.069 1 117.51 ? CBI Y01 2006 A 1 HETATM 14 C CAE Y01 . . . L 7 153.592 118.297 119.325 1 113.81 ? CAE Y01 2006 A 1 HETATM 15 C CAU Y01 . . . L 7 154.532 116.368 118.007 1 116.04 ? CAU Y01 2006 A 1 HETATM 16 C CAS Y01 . . . L 7 154.166 116.92 116.625 1 112.58 ? CAS Y01 2006 A 1 HETATM 17 C CBF Y01 . . . L 7 152.741 116.556 116.181 1 114.16 ? CBF Y01 2006 A 1 HETATM 18 C CBD Y01 . . . L 7 151.712 116.955 117.249 1 111.88 ? CBD Y01 2006 A 1 HETATM 19 C CAK Y01 . . . L 7 150.323 116.48 116.844 1 112.68 ? CAK Y01 2006 A 1 HETATM 20 C CAI Y01 . . . L 7 150.005 116.822 115.427 1 114.83 ? CAI Y01 2006 A 1 HETATM 21 C CAZ Y01 . . . L 7 150.905 117.085 114.497 1 116.25 ? CAZ Y01 2006 A 1 HETATM 22 C CAV Y01 . . . L 7 150.478 117.398 113.079 1 113.8 ? CAV Y01 2006 A 1 HETATM 23 C CBH Y01 . . . L 7 152.406 117.079 114.757 1 118.19 ? CBH Y01 2006 A 1 HETATM 24 C CAD Y01 . . . L 7 152.959 118.499 114.544 1 118.14 ? CAD Y01 2006 A 1 HETATM 25 C CAT Y01 . . . L 7 153.025 116.121 113.72 1 117.34 ? CAT Y01 2006 A 1 HETATM 26 C CAR Y01 . . . L 7 152.665 116.486 112.281 1 117.05 ? CAR Y01 2006 A 1 HETATM 27 C CBC Y01 . . . L 7 151.176 116.527 112.06 1 118.18 ? CBC Y01 2006 A 1 HETATM 28 O OAW Y01 . . . L 7 150.972 117.107 110.738 1 121.09 ? OAW Y01 2006 A 1 HETATM 29 C CAY Y01 . . . L 7 149.739 117.293 110.28 1 121.58 ? CAY Y01 2006 A 1 HETATM 30 O OAG Y01 . . . L 7 148.761 116.791 110.752 1 119.47 ? OAG Y01 2006 A 1 HETATM 31 C CAM Y01 . . . L 7 149.733 118.206 109.086 1 118.9 ? CAM Y01 2006 A 1 HETATM 32 C CAL Y01 . . . L 7 148.443 118.268 108.3 1 119.96 ? CAL Y01 2006 A 1 HETATM 33 C CAX Y01 . . . L 7 148.528 119.103 107.033 1 121.39 ? CAX Y01 2006 A 1 HETATM 34 O OAH Y01 . . . L 7 147.506 119.208 106.328 1 116.94 ? OAH Y01 2006 A 1 HETATM 35 O OAF Y01 . . . L 7 149.617 119.645 106.756 1 119.59 ? OAF Y01 2006 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 35 #