data_8THH # _model_server_result.job_id ENCPtkVmUuliXxx1uwiIDg _model_server_result.datetime_utc '2024-10-26 02:33:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8thh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":2015}' # _entry.id 8THH # _exptl.entry_id 8THH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.708 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8THH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8THH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 P N N ? 8 T N N ? 8 U N N ? 8 V N N ? 8 W N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG D 1 NAG 4 n D NAG 2 D 2 NAG D 2 NAG 4 n E NAG 1 E 1 NAG E 1 NAG 4 n E NAG 2 E 2 NAG E 2 NAG 4 n F NAG 1 F 1 NAG F 1 NAG 4 n F NAG 2 F 2 NAG F 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 275 A CYS 275 1_555 A SG CYS 324 A CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 315 A CYS 315 1_555 A SG CYS 330 A CYS 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 895 A CYS 895 1_555 C SG CYS 55 C CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 897 A CYS 897 1_555 A SG CYS 903 A CYS 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 935 A CYS 935 1_555 A SG CYS 944 A CYS 944 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 1350 A CYS 1350 1_555 A SG CYS 1370 A CYS 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 1715 A CYS 1715 1_555 A SG CYS 1730 A CYS 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 50 C CYS 50 1_555 C SG CYS 127 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 72 C CYS 72 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 283 A ASN 283 1_555 G C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 1352 A ASN 1352 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 A ND2 ASN 1366 A ASN 1366 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 1375 A ASN 1375 1_555 H C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 B ND2 ASN 93 B ASN 93 1_555 Y C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B ND2 ASN 110 B ASN 110 1_555 Z C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 114 B ASN 114 1_555 AA C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C26 H57 N O6 P 1' _chem_comp.formula_weight 510.708 _chem_comp.id LPE _chem_comp.mon_nstd_flag . _chem_comp.name 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LPC-ETHER # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 LPE sing 218 n n C1 C2 LPE sing 219 n n C1 H11 LPE sing 220 n n C1 H12 LPE sing 221 n n O1 C11 LPE sing 222 n n C2 O2H LPE sing 223 n n C2 C3 LPE sing 224 n n C2 H21 LPE sing 225 n n O2H HO21 LPE sing 226 n n C3 O3 LPE sing 227 n n C3 H31 LPE sing 228 n n C3 H32 LPE sing 229 n n C11 C12 LPE sing 230 n n C11 H111 LPE sing 231 n n C11 H112 LPE sing 232 n n C12 C13 LPE sing 233 n n C12 H121 LPE sing 234 n n C12 H122 LPE sing 235 n n O3 P LPE sing 236 n n P O31 LPE doub 237 n n P O32 LPE sing 238 n n P O33 LPE sing 239 n n O32 HO31 LPE sing 240 n n O33 C31 LPE sing 241 n n C31 C32 LPE sing 242 n n C31 H311 LPE sing 243 n n C31 H312 LPE sing 244 n n C32 N LPE sing 245 n n C32 H321 LPE sing 246 n n C32 H322 LPE sing 247 n n N C1N LPE sing 248 n n N C2N LPE sing 249 n n N C3N LPE sing 250 n n C1N H1N1 LPE sing 251 n n C1N H1N2 LPE sing 252 n n C1N H1N3 LPE sing 253 n n C2N H2N1 LPE sing 254 n n C2N H2N2 LPE sing 255 n n C2N H2N3 LPE sing 256 n n C3N H3N1 LPE sing 257 n n C3N H3N2 LPE sing 258 n n C3N H3N3 LPE sing 259 n n C13 C14 LPE sing 260 n n C13 H131 LPE sing 261 n n C13 H132 LPE sing 262 n n C14 C15 LPE sing 263 n n C14 H141 LPE sing 264 n n C14 H142 LPE sing 265 n n C15 C16 LPE sing 266 n n C15 H151 LPE sing 267 n n C15 H152 LPE sing 268 n n C16 C17 LPE sing 269 n n C16 H161 LPE sing 270 n n C16 H162 LPE sing 271 n n C17 C18 LPE sing 272 n n C17 H171 LPE sing 273 n n C17 H172 LPE sing 274 n n C18 C19 LPE sing 275 n n C18 H181 LPE sing 276 n n C18 H182 LPE sing 277 n n C19 C20 LPE sing 278 n n C19 H191 LPE sing 279 n n C19 H192 LPE sing 280 n n C20 C21 LPE sing 281 n n C20 H201 LPE sing 282 n n C20 H202 LPE sing 283 n n C21 C22 LPE sing 284 n n C21 H211 LPE sing 285 n n C21 H212 LPE sing 286 n n C22 C23 LPE sing 287 n n C22 H221 LPE sing 288 n n C22 H222 LPE sing 289 n n C23 C24 LPE sing 290 n n C23 H231 LPE sing 291 n n C23 H232 LPE sing 292 n n C24 C25 LPE sing 293 n n C24 H241 LPE sing 294 n n C24 H242 LPE sing 295 n n C25 C26 LPE sing 296 n n C25 H251 LPE sing 297 n n C25 H252 LPE sing 298 n n C26 C27 LPE sing 299 n n C26 H261 LPE sing 300 n n C26 H262 LPE sing 301 n n C27 C28 LPE sing 302 n n C27 H271 LPE sing 303 n n C27 H272 LPE sing 304 n n C28 H281 LPE sing 305 n n C28 H282 LPE sing 306 n n C28 H283 LPE sing 307 n n # _atom_sites.entry_id 8THH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 NAG A 1 2001 2001 NAG NAG . H 5 NAG A 1 2002 2008 NAG NAG . I 6 IYJ A 1 2003 2001 IYJ LIG . J 6 IYJ A 1 2004 2002 IYJ LIG . K 7 Y01 A 1 2005 2003 Y01 Y01 . L 7 Y01 A 1 2006 2004 Y01 Y01 . M 7 Y01 A 1 2007 2005 Y01 Y01 . N 8 LPE A 1 2008 2006 LPE LPE . O 9 PCW A 1 2009 2007 PCW PCW . P 8 LPE A 1 2010 2008 LPE LPE . Q 9 PCW A 1 2011 2009 PCW PCW . R 10 P5S A 1 2012 2010 P5S P5S . S 9 PCW A 1 2013 2011 PCW PCW . T 8 LPE A 1 2014 2012 LPE LPE . U 8 LPE A 1 2015 2013 LPE LPE . V 8 LPE A 1 2016 2014 LPE LPE . W 8 LPE A 1 2017 2015 LPE LPE . X 7 Y01 A 1 2018 2016 Y01 Y01 . Y 5 NAG B 1 301 301 NAG NAG . Z 5 NAG B 1 302 302 NAG NAG . AA 5 NAG B 1 303 303 NAG NAG . BA 11 HOH A 1 2101 9 HOH HOH . BA 11 HOH A 2 2102 2 HOH HOH . BA 11 HOH A 3 2103 7 HOH HOH . BA 11 HOH A 4 2104 6 HOH HOH . BA 11 HOH A 5 2105 4 HOH HOH . BA 11 HOH A 6 2106 8 HOH HOH . BA 11 HOH A 7 2107 5 HOH HOH . BA 11 HOH A 8 2108 1 HOH HOH . BA 11 HOH A 9 2109 10 HOH HOH . CA 11 HOH B 1 401 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPE . . . U 8 119.017 120.852 146.643 1 108.88 ? C1 LPE 2015 A 1 HETATM 2 O O1 LPE . . . U 8 118.425 121.332 145.443 1 110.37 ? O1 LPE 2015 A 1 HETATM 3 C C2 LPE . . . U 8 118.505 121.669 147.808 1 105.78 ? C2 LPE 2015 A 1 HETATM 4 O O2H LPE . . . U 8 117.079 121.64 147.81 1 97.92 ? O2H LPE 2015 A 1 HETATM 5 C C3 LPE . . . U 8 119.02 121.194 149.149 1 108.38 ? C3 LPE 2015 A 1 HETATM 6 C C11 LPE . . . U 8 118.81 120.606 144.282 1 107.08 ? C11 LPE 2015 A 1 HETATM 7 C C12 LPE . . . U 8 117.968 121.062 143.116 1 108.54 ? C12 LPE 2015 A 1 HETATM 8 O O3 LPE . . . U 8 118.551 122.077 150.206 1 111.08 ? O3 LPE 2015 A 1 HETATM 9 P P LPE . . . U 8 117.143 121.799 150.927 1 132.35 ? P LPE 2015 A 1 HETATM 10 O O31 LPE . . . U 8 116.115 121.455 149.885 1 111.47 ? O31 LPE 2015 A 1 HETATM 11 O O32 LPE . . . U 8 116.888 122.939 151.872 1 118.76 ? O32 LPE 2015 A 1 HETATM 12 O O33 LPE . . . U 8 117.426 120.508 151.839 1 114.17 ? O33 LPE 2015 A 1 HETATM 13 C C31 LPE . . . U 8 116.428 120.11 152.819 1 109.08 ? C31 LPE 2015 A 1 HETATM 14 C C32 LPE . . . U 8 116.913 118.918 153.607 1 113.56 ? C32 LPE 2015 A 1 HETATM 15 N N LPE . . . U 8 116.014 118.468 154.742 1 119.68 ? N LPE 2015 A 1 HETATM 16 C C1N LPE . . . U 8 115.915 119.544 155.766 1 111.22 ? C1N LPE 2015 A 1 HETATM 17 C C2N LPE . . . U 8 114.652 118.169 154.222 1 111.66 ? C2N LPE 2015 A 1 HETATM 18 C C3N LPE . . . U 8 116.57 117.243 155.378 1 113.69 ? C3N LPE 2015 A 1 HETATM 19 C C13 LPE . . . U 8 118.202 120.262 141.859 1 110.4 ? C13 LPE 2015 A 1 HETATM 20 C C14 LPE . . . U 8 119.536 120.535 141.211 1 111.99 ? C14 LPE 2015 A 1 HETATM 21 C C15 LPE . . . U 8 119.61 121.842 140.462 1 106.73 ? C15 LPE 2015 A 1 HETATM 22 C C16 LPE . . . U 8 120.948 122.105 139.816 1 110.47 ? C16 LPE 2015 A 1 HETATM 23 C C17 LPE . . . U 8 120.979 123.32 138.922 1 111.64 ? C17 LPE 2015 A 1 HETATM 24 C C18 LPE . . . U 8 120.14 123.196 137.674 1 111.02 ? C18 LPE 2015 A 1 HETATM 25 C C19 LPE . . . U 8 120.597 122.118 136.722 1 102.28 ? C19 LPE 2015 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #