data_8THP # _model_server_result.job_id 4MwYX-asKZoMIwiBwOwrFg _model_server_result.datetime_utc '2025-04-25 09:56:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8thp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 8THP # _exptl.entry_id 8THP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8THP _cell.length_a 86.089 _cell.length_b 96.978 _cell.length_c 130.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8THP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 14 A ASP 11 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc2 A OD2 ASP 14 A ASP 11 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc3 A OD2 ASP 57 A ASP 54 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A O ASN 59 A ASN 56 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 A OD1 ASP 363 A ASP 360 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc6 A OD2 ASP 363 A ASP 360 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc7 C CA CA . A CA 601 1_555 H O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc8 D CA CA . A CA 602 1_555 H O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc9 B OD1 ASP 14 B ASP 11 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 B OD2 ASP 14 B ASP 11 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc11 B OD2 ASP 57 B ASP 54 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc12 B O ASN 59 B ASN 56 1_555 F CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc13 B OD1 ASP 363 B ASP 360 1_555 G CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc14 F CA CA . B CA 601 1_555 I O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc15 G CA CA . B CA 602 1_555 I O HOH . B HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8THP _atom_sites.fract_transf_matrix[1][1] 0.011616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 601 1 CA CA . D 2 CA A 1 602 3 CA CA . E 3 GOL A 1 603 601 GOL GOL . F 2 CA B 1 601 2 CA CA . G 2 CA B 1 602 4 CA CA . H 4 HOH A 1 701 43 HOH HOH . H 4 HOH A 2 702 21 HOH HOH . H 4 HOH A 3 703 1 HOH HOH . H 4 HOH A 4 704 29 HOH HOH . H 4 HOH A 5 705 24 HOH HOH . H 4 HOH A 6 706 39 HOH HOH . H 4 HOH A 7 707 4 HOH HOH . H 4 HOH A 8 708 6 HOH HOH . H 4 HOH A 9 709 36 HOH HOH . H 4 HOH A 10 710 38 HOH HOH . H 4 HOH A 11 711 42 HOH HOH . H 4 HOH A 12 712 5 HOH HOH . H 4 HOH A 13 713 7 HOH HOH . H 4 HOH A 14 714 33 HOH HOH . H 4 HOH A 15 715 20 HOH HOH . H 4 HOH A 16 716 22 HOH HOH . H 4 HOH A 17 717 26 HOH HOH . H 4 HOH A 18 718 27 HOH HOH . H 4 HOH A 19 719 37 HOH HOH . H 4 HOH A 20 720 2 HOH HOH . H 4 HOH A 21 721 41 HOH HOH . H 4 HOH A 22 722 31 HOH HOH . I 4 HOH B 1 701 19 HOH HOH . I 4 HOH B 2 702 3 HOH HOH . I 4 HOH B 3 703 14 HOH HOH . I 4 HOH B 4 704 40 HOH HOH . I 4 HOH B 5 705 12 HOH HOH . I 4 HOH B 6 706 25 HOH HOH . I 4 HOH B 7 707 18 HOH HOH . I 4 HOH B 8 708 32 HOH HOH . I 4 HOH B 9 709 23 HOH HOH . I 4 HOH B 10 710 9 HOH HOH . I 4 HOH B 11 711 16 HOH HOH . I 4 HOH B 12 712 34 HOH HOH . I 4 HOH B 13 713 17 HOH HOH . I 4 HOH B 14 714 13 HOH HOH . I 4 HOH B 15 715 35 HOH HOH . I 4 HOH B 16 716 11 HOH HOH . I 4 HOH B 17 717 44 HOH HOH . I 4 HOH B 18 718 28 HOH HOH . I 4 HOH B 19 719 15 HOH HOH . I 4 HOH B 20 720 8 HOH HOH . I 4 HOH B 21 721 10 HOH HOH . I 4 HOH B 22 722 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 50.235 23.724 29.935 1 43.82 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . E 3 48.944 24.338 29.832 1 38.41 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . E 3 51.253 24.184 28.886 1 42.54 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . E 3 51.511 25.586 28.956 1 34.16 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . E 3 52.599 23.491 29.006 1 40.64 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . E 3 52.653 22.245 28.314 1 38.73 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #