data_8TI1 # _model_server_result.job_id RKdH7jdTrd5zJ4iMj1bS7w _model_server_result.datetime_utc '2024-11-30 05:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ti1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1602}' # _entry.id 8TI1 # _exptl.entry_id 8TI1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 691.959 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TI1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TI1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 W N N ? 5 BA N N ? 5 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 6 E CYS 6 1_555 B SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 C SG CYS 110 B CYS 110 1_555 C SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 D SG CYS 110 C CYS 110 1_555 D SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 E SG CYS 110 D CYS 110 1_555 E SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 F SG CYS 6 H CYS 6 1_555 F SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 G SG CYS 6 G CYS 6 1_555 G SG CYS 26 G CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 H SG CYS 6 F CYS 6 1_555 H SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 B ND2 ASN 10 E ASN 10 1_555 R C1 NAG . E NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 F ND2 ASN 10 H ASN 10 1_555 Z C1 NAG . H NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 G ND2 ASN 10 G ASN 10 1_555 EA C1 NAG . G NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 H ND2 ASN 10 F ASN 10 1_555 JA C1 NAG . F NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OG1 THR 130 A THR 130 1_555 J K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc2 A O THR 130 A THR 130 1_555 L K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 A O ILE 131 A ILE 131 1_555 L K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc4 A O GLY 132 A GLY 132 1_555 K K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc5 A O PHE 133 A PHE 133 1_555 K K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc6 J K K . A K 402 1_555 C OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc7 J K K . A K 402 1_555 D OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc8 J K K . A K 402 1_555 E OG1 THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc9 K K K . A K 403 1_555 C O GLY 132 B GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc10 K K K . A K 403 1_555 C O PHE 133 B PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc11 K K K . A K 403 1_555 D O GLY 132 C GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc12 K K K . A K 403 1_555 D O PHE 133 C PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc13 K K K . A K 403 1_555 E O GLY 132 D GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc14 K K K . A K 403 1_555 E O PHE 133 D PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc15 L K K . A K 404 1_555 C O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc16 L K K . A K 404 1_555 C O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc17 L K K . A K 404 1_555 D O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc18 L K K . A K 404 1_555 D O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc19 L K K . A K 404 1_555 E O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? metalc ? metalc20 L K K . A K 404 1_555 E O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PEF sing 402 n n C2 C3 PEF sing 403 n n C2 O2 PEF sing 404 n n C2 H21 PEF sing 405 n n C1 O3P PEF sing 406 n n C1 H11 PEF sing 407 n n C1 H12 PEF sing 408 n n N C5 PEF sing 409 n n N HN1 PEF sing 410 n n N HN2 PEF sing 411 n n C3 O3 PEF sing 412 n n C3 H31 PEF sing 413 n n C3 H32 PEF sing 414 n n C4 C5 PEF sing 415 n n C4 O4P PEF sing 416 n n C4 H41 PEF sing 417 n n C4 H42 PEF sing 418 n n C5 H51 PEF sing 419 n n C5 H52 PEF sing 420 n n C10 C11 PEF sing 421 n n C10 O4 PEF doub 422 n n C10 O2 PEF sing 423 n n C11 C12 PEF sing 424 n n C11 H112 PEF sing 425 n n C11 H111 PEF sing 426 n n C12 C13 PEF sing 427 n n C12 H122 PEF sing 428 n n C12 H121 PEF sing 429 n n C13 C14 PEF sing 430 n n C13 H132 PEF sing 431 n n C13 H131 PEF sing 432 n n C14 C15 PEF sing 433 n n C14 H142 PEF sing 434 n n C14 H141 PEF sing 435 n n C15 C16 PEF sing 436 n n C15 H152 PEF sing 437 n n C15 H151 PEF sing 438 n n C16 C17 PEF sing 439 n n C16 H162 PEF sing 440 n n C16 H161 PEF sing 441 n n C17 C18 PEF sing 442 n n C17 H172 PEF sing 443 n n C17 H171 PEF sing 444 n n C18 C19 PEF sing 445 n n C18 H182 PEF sing 446 n n C18 H181 PEF sing 447 n n C19 C20 PEF sing 448 n n C19 H192 PEF sing 449 n n C19 H191 PEF sing 450 n n C20 C21 PEF sing 451 n n C20 H202 PEF sing 452 n n C20 H201 PEF sing 453 n n C21 C22 PEF sing 454 n n C21 H212 PEF sing 455 n n C21 H211 PEF sing 456 n n C22 C23 PEF sing 457 n n C22 H222 PEF sing 458 n n C22 H221 PEF sing 459 n n C23 C24 PEF sing 460 n n C23 H232 PEF sing 461 n n C23 H231 PEF sing 462 n n C24 C25 PEF sing 463 n n C24 H242 PEF sing 464 n n C24 H241 PEF sing 465 n n C25 H252 PEF sing 466 n n C25 H251 PEF sing 467 n n C25 H253 PEF sing 468 n n C30 C31 PEF sing 469 n n C30 O5 PEF doub 470 n n C30 O3 PEF sing 471 n n C31 C32 PEF sing 472 n n C31 H312 PEF sing 473 n n C31 H311 PEF sing 474 n n C32 C33 PEF sing 475 n n C32 H322 PEF sing 476 n n C32 H321 PEF sing 477 n n C33 C34 PEF sing 478 n n C33 H332 PEF sing 479 n n C33 H331 PEF sing 480 n n C34 C35 PEF sing 481 n n C34 H342 PEF sing 482 n n C34 H341 PEF sing 483 n n C35 C36 PEF sing 484 n n C35 H352 PEF sing 485 n n C35 H351 PEF sing 486 n n C36 C37 PEF sing 487 n n C36 H362 PEF sing 488 n n C36 H361 PEF sing 489 n n C37 C38 PEF sing 490 n n C37 H372 PEF sing 491 n n C37 H371 PEF sing 492 n n C38 C39 PEF sing 493 n n C38 H382 PEF sing 494 n n C38 H381 PEF sing 495 n n C39 C40 PEF sing 496 n n C39 H392 PEF sing 497 n n C39 H391 PEF sing 498 n n C40 C41 PEF sing 499 n n C40 H402 PEF sing 500 n n C40 H401 PEF sing 501 n n C41 C42 PEF sing 502 n n C41 H412 PEF sing 503 n n C41 H411 PEF sing 504 n n C42 C43 PEF sing 505 n n C42 H422 PEF sing 506 n n C42 H421 PEF sing 507 n n C43 C44 PEF sing 508 n n C43 H432 PEF sing 509 n n C43 H431 PEF sing 510 n n C44 C45 PEF sing 511 n n C44 H442 PEF sing 512 n n C44 H441 PEF sing 513 n n C45 H452 PEF sing 514 n n C45 H451 PEF sing 515 n n C45 H453 PEF sing 516 n n O1P P PEF doub 517 n n O2P P PEF sing 518 n n O2P HOP2 PEF sing 519 n n O3P P PEF sing 520 n n O4P P PEF sing 521 n n # _atom_sites.entry_id 8TI1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PT5 A 1 401 401 PT5 PT5 . J 4 K A 1 402 1 K K . K 4 K A 1 403 2 K K . L 4 K A 1 404 3 K K . M 4 K A 1 405 4 K K . N 3 PT5 E 1 1601 402 PT5 PT5 . O 5 PEF E 1 1602 1604 PEF PEF . P 6 P5S E 1 1603 1605 P5S P5S . Q 6 P5S E 1 1604 1606 P5S P5S . R 7 NAG E 1 1605 2001 NAG NAG . S 3 PT5 B 1 401 401 PT5 PT5 . T 3 PT5 C 1 401 401 PT5 PT5 . U 3 PT5 D 1 401 401 PT5 PT5 . V 3 PT5 H 1 1601 402 PT5 PT5 . W 5 PEF H 1 1602 1604 PEF PEF . X 6 P5S H 1 1603 1605 P5S P5S . Y 6 P5S H 1 1604 1606 P5S P5S . Z 7 NAG H 1 1605 2001 NAG NAG . AA 3 PT5 G 1 1601 402 PT5 PT5 . BA 5 PEF G 1 1602 1604 PEF PEF . CA 6 P5S G 1 1603 1605 P5S P5S . DA 6 P5S G 1 1604 1606 P5S P5S . EA 7 NAG G 1 1605 2001 NAG NAG . FA 3 PT5 F 1 1601 402 PT5 PT5 . GA 5 PEF F 1 1602 1604 PEF PEF . HA 6 P5S F 1 1603 1605 P5S P5S . IA 6 P5S F 1 1604 1606 P5S P5S . JA 7 NAG F 1 1605 2001 NAG NAG . KA 8 HOH A 1 501 20 HOH HOH . KA 8 HOH A 2 502 24 HOH HOH . KA 8 HOH A 3 503 14 HOH HOH . KA 8 HOH A 4 504 3 HOH HOH . LA 8 HOH B 1 501 21 HOH HOH . LA 8 HOH B 2 502 13 HOH HOH . LA 8 HOH B 3 503 4 HOH HOH . MA 8 HOH C 1 501 23 HOH HOH . MA 8 HOH C 2 502 12 HOH HOH . MA 8 HOH C 3 503 5 HOH HOH . NA 8 HOH D 1 501 22 HOH HOH . NA 8 HOH D 2 502 25 HOH HOH . NA 8 HOH D 3 503 15 HOH HOH . NA 8 HOH D 4 504 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEF . . . W 5 281.13 221.514 247.179 1 122.55 ? C2 PEF 1602 H 1 HETATM 2 C C1 PEF . . . W 5 281.834 220.77 246.047 1 123.01 ? C1 PEF 1602 H 1 HETATM 3 N N PEF . . . W 5 280.937 224.091 241.21 1 120.3 ? N PEF 1602 H 1 HETATM 4 C C3 PEF . . . W 5 279.664 221.082 247.277 1 124.66 ? C3 PEF 1602 H 1 HETATM 5 C C4 PEF . . . W 5 282.771 222.89 242.258 1 126.87 ? C4 PEF 1602 H 1 HETATM 6 C C5 PEF . . . W 5 281.27 222.92 242.002 1 124.51 ? C5 PEF 1602 H 1 HETATM 7 C C10 PEF . . . W 5 282.072 220.081 248.939 1 126.36 ? C10 PEF 1602 H 1 HETATM 8 C C11 PEF . . . W 5 283.13 219.93 250.05 1 124.44 ? C11 PEF 1602 H 1 HETATM 9 C C12 PEF . . . W 5 283.014 218.525 250.67 1 125.37 ? C12 PEF 1602 H 1 HETATM 10 C C13 PEF . . . W 5 281.798 218.47 251.619 1 123.29 ? C13 PEF 1602 H 1 HETATM 11 C C14 PEF . . . W 5 282.224 217.882 252.982 1 121.8 ? C14 PEF 1602 H 1 HETATM 12 C C15 PEF . . . W 5 281.578 216.494 253.18 1 122.61 ? C15 PEF 1602 H 1 HETATM 13 C C16 PEF . . . W 5 282.352 215.731 254.275 1 125.71 ? C16 PEF 1602 H 1 HETATM 14 C C17 PEF . . . W 5 281.392 214.828 255.069 1 127.61 ? C17 PEF 1602 H 1 HETATM 15 C C18 PEF . . . W 5 280.519 214.004 254.099 1 126.99 ? C18 PEF 1602 H 1 HETATM 16 C C30 PEF . . . W 5 278.241 220.185 248.916 1 127.69 ? C30 PEF 1602 H 1 HETATM 17 C C31 PEF . . . W 5 277.513 220.285 250.246 1 125.77 ? C31 PEF 1602 H 1 HETATM 18 C C32 PEF . . . W 5 277.456 218.911 250.894 1 123.59 ? C32 PEF 1602 H 1 HETATM 19 C C33 PEF . . . W 5 277.526 219.069 252.41 1 125.27 ? C33 PEF 1602 H 1 HETATM 20 O O4 PEF . . . W 5 281.509 219.108 248.563 1 130.7 ? O4 PEF 1602 H 1 HETATM 21 O O5 PEF . . . W 5 277.938 219.347 248.136 1 129.78 ? O5 PEF 1602 H 1 HETATM 22 O O2 PEF . . . W 5 281.797 221.366 248.421 1 121.99 ? O2 PEF 1602 H 1 HETATM 23 O O3 PEF . . . W 5 279.277 221.083 248.617 1 127.09 ? O3 PEF 1602 H 1 HETATM 24 O O1P PEF . . . W 5 284.773 222.995 244.889 1 123.02 ? O1P PEF 1602 H 1 HETATM 25 O O2P PEF . . . W 5 282.413 223.634 245.076 1 129.81 ? O2P PEF 1602 H 1 HETATM 26 O O3P PEF . . . W 5 283.124 221.288 245.875 1 122.2 ? O3P PEF 1602 H 1 HETATM 27 O O4P PEF . . . W 5 283.071 221.946 243.256 1 128.88 ? O4P PEF 1602 H 1 HETATM 28 P P PEF . . . W 5 283.354 222.497 244.783 1 126.78 ? P PEF 1602 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #