data_8TI1
#
_model_server_result.job_id            J5B4r_nGAMd-riVAKM0Pxw 
_model_server_result.datetime_utc      '2024-11-05 23:00:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ti1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1605}' 
#
_entry.id    8TI1 
#
_exptl.entry_id    8TI1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TI1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TI1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 R N N 
? 7 Z N N 
? 7 EA N N 
? 7 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 6 E CYS 6 1_555 B SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 C SG CYS 110 B CYS 110 1_555 C SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 D SG CYS 110 C CYS 110 1_555 D SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 E SG CYS 110 D CYS 110 1_555 E SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 F SG CYS 6 H CYS 6 1_555 F SG CYS 26 H CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 G SG CYS 6 G CYS 6 1_555 G SG CYS 26 G CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 H SG CYS 6 F CYS 6 1_555 H SG CYS 26 F CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 B ND2 ASN 10 E ASN 10 1_555 R C1 NAG . E NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 F ND2 ASN 10 H ASN 10 1_555 Z C1 NAG . H NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 G ND2 ASN 10 G ASN 10 1_555 EA C1 NAG . G NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 H ND2 ASN 10 F ASN 10 1_555 JA C1 NAG . F NAG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
metalc ? metalc1 A OG1 THR 130 A THR 130 1_555 J K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? 
metalc ? metalc2 A O THR 130 A THR 130 1_555 L K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc3 A O ILE 131 A ILE 131 1_555 L K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc4 A O GLY 132 A GLY 132 1_555 K K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc5 A O PHE 133 A PHE 133 1_555 K K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? 
metalc ? metalc6 J K K . A K 402 1_555 C OG1 THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? 
metalc ? metalc7 J K K . A K 402 1_555 D OG1 THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? 
metalc ? metalc8 J K K . A K 402 1_555 E OG1 THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? 
metalc ? metalc9 K K K . A K 403 1_555 C O GLY 132 B GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc10 K K K . A K 403 1_555 C O PHE 133 B PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
metalc ? metalc11 K K K . A K 403 1_555 D O GLY 132 C GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc12 K K K . A K 403 1_555 D O PHE 133 C PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? 
metalc ? metalc13 K K K . A K 403 1_555 E O GLY 132 D GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc14 K K K . A K 403 1_555 E O PHE 133 D PHE 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? 
metalc ? metalc15 L K K . A K 404 1_555 C O THR 130 B THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc16 L K K . A K 404 1_555 C O ILE 131 B ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc17 L K K . A K 404 1_555 D O THR 130 C THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc18 L K K . A K 404 1_555 D O ILE 131 C ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? 
metalc ? metalc19 L K K . A K 404 1_555 E O THR 130 D THR 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc20 L K K . A K 404 1_555 E O ILE 131 D ILE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TI1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 PT5 A 1 401 401 PT5 PT5 . 
J 4 K A 1 402 1 K K . 
K 4 K A 1 403 2 K K . 
L 4 K A 1 404 3 K K . 
M 4 K A 1 405 4 K K . 
N 3 PT5 E 1 1601 402 PT5 PT5 . 
O 5 PEF E 1 1602 1604 PEF PEF . 
P 6 P5S E 1 1603 1605 P5S P5S . 
Q 6 P5S E 1 1604 1606 P5S P5S . 
R 7 NAG E 1 1605 2001 NAG NAG . 
S 3 PT5 B 1 401 401 PT5 PT5 . 
T 3 PT5 C 1 401 401 PT5 PT5 . 
U 3 PT5 D 1 401 401 PT5 PT5 . 
V 3 PT5 H 1 1601 402 PT5 PT5 . 
W 5 PEF H 1 1602 1604 PEF PEF . 
X 6 P5S H 1 1603 1605 P5S P5S . 
Y 6 P5S H 1 1604 1606 P5S P5S . 
Z 7 NAG H 1 1605 2001 NAG NAG . 
AA 3 PT5 G 1 1601 402 PT5 PT5 . 
BA 5 PEF G 1 1602 1604 PEF PEF . 
CA 6 P5S G 1 1603 1605 P5S P5S . 
DA 6 P5S G 1 1604 1606 P5S P5S . 
EA 7 NAG G 1 1605 2001 NAG NAG . 
FA 3 PT5 F 1 1601 402 PT5 PT5 . 
GA 5 PEF F 1 1602 1604 PEF PEF . 
HA 6 P5S F 1 1603 1605 P5S P5S . 
IA 6 P5S F 1 1604 1606 P5S P5S . 
JA 7 NAG F 1 1605 2001 NAG NAG . 
KA 8 HOH A 1 501 20 HOH HOH . 
KA 8 HOH A 2 502 24 HOH HOH . 
KA 8 HOH A 3 503 14 HOH HOH . 
KA 8 HOH A 4 504 3 HOH HOH . 
LA 8 HOH B 1 501 21 HOH HOH . 
LA 8 HOH B 2 502 13 HOH HOH . 
LA 8 HOH B 3 503 4 HOH HOH . 
MA 8 HOH C 1 501 23 HOH HOH . 
MA 8 HOH C 2 502 12 HOH HOH . 
MA 8 HOH C 3 503 5 HOH HOH . 
NA 8 HOH D 1 501 22 HOH HOH . 
NA 8 HOH D 2 502 25 HOH HOH . 
NA 8 HOH D 3 503 15 HOH HOH . 
NA 8 HOH D 4 504 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . Z 7 277.178 233.166 297.709 1 193.02 ? C1 NAG 1605 H 1 
HETATM 2 C C2 NAG . . . Z 7 277.257 233.077 299.231 1 194.15 ? C2 NAG 1605 H 1 
HETATM 3 C C3 NAG . . . Z 7 278.264 232.006 299.661 1 194.21 ? C3 NAG 1605 H 1 
HETATM 4 C C4 NAG . . . Z 7 279.513 232.017 298.784 1 193.91 ? C4 NAG 1605 H 1 
HETATM 5 C C5 NAG . . . Z 7 279.157 231.969 297.3 1 194.56 ? C5 NAG 1605 H 1 
HETATM 6 C C6 NAG . . . Z 7 279.644 230.714 296.614 1 193.72 ? C6 NAG 1605 H 1 
HETATM 7 C C7 NAG . . . Z 7 276.71 235.337 300.021 1 193.64 ? C7 NAG 1605 H 1 
HETATM 8 C C8 NAG . . . Z 7 277.244 236.601 300.625 1 193.33 ? C8 NAG 1605 H 1 
HETATM 9 N N2 NAG . . . Z 7 277.604 234.365 299.81 1 194.02 ? N2 NAG 1605 H 1 
HETATM 10 O O3 NAG . . . Z 7 277.644 230.726 299.607 1 193.78 ? O3 NAG 1605 H 1 
HETATM 11 O O4 NAG . . . Z 7 280.277 233.189 299.044 1 192.44 ? O4 NAG 1605 H 1 
HETATM 12 O O5 NAG . . . Z 7 277.734 232.004 297.139 1 194.33 ? O5 NAG 1605 H 1 
HETATM 13 O O6 NAG . . . Z 7 280.397 231.02 295.449 1 192.81 ? O6 NAG 1605 H 1 
HETATM 14 O O7 NAG . . . Z 7 275.524 235.202 299.738 1 193.56 ? O7 NAG 1605 H 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#