data_8TI4 # _model_server_result.job_id I5W_mCtt80OZsnX8OfAWng _model_server_result.datetime_utc '2024-11-14 03:15:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ti4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8TI4 # _exptl.entry_id 8TI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TI4 _cell.length_a 71.269 _cell.length_b 78.815 _cell.length_c 80.925 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? disulf ? disulf2 A SG CYS 129 H CYS 129 1_555 B SG CYS 122 L CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? disulf ? disulf3 A SG CYS 147 H CYS 147 1_555 A SG CYS 203 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? disulf ? disulf5 B SG CYS 135 L CYS 135 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8TI4 _atom_sites.fract_transf_matrix[1][1] 0.014031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 301 1 GOL GOL . D 4 HOH H 1 301 101 HOH HOH . D 4 HOH H 2 302 76 HOH HOH . D 4 HOH H 3 303 74 HOH HOH . D 4 HOH H 4 304 82 HOH HOH . D 4 HOH H 5 305 128 HOH HOH . D 4 HOH H 6 306 95 HOH HOH . D 4 HOH H 7 307 34 HOH HOH . D 4 HOH H 8 308 20 HOH HOH . D 4 HOH H 9 309 85 HOH HOH . D 4 HOH H 10 310 11 HOH HOH . D 4 HOH H 11 311 3 HOH HOH . D 4 HOH H 12 312 84 HOH HOH . D 4 HOH H 13 313 5 HOH HOH . D 4 HOH H 14 314 125 HOH HOH . D 4 HOH H 15 315 18 HOH HOH . D 4 HOH H 16 316 100 HOH HOH . D 4 HOH H 17 317 134 HOH HOH . D 4 HOH H 18 318 131 HOH HOH . D 4 HOH H 19 319 37 HOH HOH . D 4 HOH H 20 320 36 HOH HOH . D 4 HOH H 21 321 27 HOH HOH . D 4 HOH H 22 322 1 HOH HOH . D 4 HOH H 23 323 94 HOH HOH . D 4 HOH H 24 324 17 HOH HOH . D 4 HOH H 25 325 32 HOH HOH . D 4 HOH H 26 326 45 HOH HOH . D 4 HOH H 27 327 86 HOH HOH . D 4 HOH H 28 328 39 HOH HOH . D 4 HOH H 29 329 55 HOH HOH . D 4 HOH H 30 330 6 HOH HOH . D 4 HOH H 31 331 35 HOH HOH . D 4 HOH H 32 332 2 HOH HOH . D 4 HOH H 33 333 137 HOH HOH . D 4 HOH H 34 334 41 HOH HOH . D 4 HOH H 35 335 88 HOH HOH . D 4 HOH H 36 336 4 HOH HOH . D 4 HOH H 37 337 83 HOH HOH . D 4 HOH H 38 338 30 HOH HOH . D 4 HOH H 39 339 29 HOH HOH . D 4 HOH H 40 340 50 HOH HOH . D 4 HOH H 41 341 12 HOH HOH . D 4 HOH H 42 342 7 HOH HOH . D 4 HOH H 43 343 96 HOH HOH . D 4 HOH H 44 344 81 HOH HOH . D 4 HOH H 45 345 75 HOH HOH . D 4 HOH H 46 346 98 HOH HOH . D 4 HOH H 47 347 90 HOH HOH . D 4 HOH H 48 348 72 HOH HOH . D 4 HOH H 49 349 25 HOH HOH . D 4 HOH H 50 350 79 HOH HOH . D 4 HOH H 51 351 127 HOH HOH . D 4 HOH H 52 352 40 HOH HOH . D 4 HOH H 53 353 80 HOH HOH . D 4 HOH H 54 354 126 HOH HOH . D 4 HOH H 55 355 97 HOH HOH . D 4 HOH H 56 356 71 HOH HOH . D 4 HOH H 57 357 136 HOH HOH . D 4 HOH H 58 358 87 HOH HOH . D 4 HOH H 59 359 78 HOH HOH . D 4 HOH H 60 360 99 HOH HOH . D 4 HOH H 61 361 113 HOH HOH . D 4 HOH H 62 362 89 HOH HOH . D 4 HOH H 63 363 135 HOH HOH . D 4 HOH H 64 364 64 HOH HOH . D 4 HOH H 65 365 92 HOH HOH . D 4 HOH H 66 366 73 HOH HOH . D 4 HOH H 67 367 93 HOH HOH . D 4 HOH H 68 368 123 HOH HOH . D 4 HOH H 69 369 108 HOH HOH . D 4 HOH H 70 370 124 HOH HOH . E 4 HOH L 1 401 77 HOH HOH . E 4 HOH L 2 402 117 HOH HOH . E 4 HOH L 3 403 133 HOH HOH . E 4 HOH L 4 404 69 HOH HOH . E 4 HOH L 5 405 121 HOH HOH . E 4 HOH L 6 406 51 HOH HOH . E 4 HOH L 7 407 9 HOH HOH . E 4 HOH L 8 408 120 HOH HOH . E 4 HOH L 9 409 23 HOH HOH . E 4 HOH L 10 410 70 HOH HOH . E 4 HOH L 11 411 54 HOH HOH . E 4 HOH L 12 412 43 HOH HOH . E 4 HOH L 13 413 38 HOH HOH . E 4 HOH L 14 414 109 HOH HOH . E 4 HOH L 15 415 44 HOH HOH . E 4 HOH L 16 416 14 HOH HOH . E 4 HOH L 17 417 107 HOH HOH . E 4 HOH L 18 418 49 HOH HOH . E 4 HOH L 19 419 13 HOH HOH . E 4 HOH L 20 420 8 HOH HOH . E 4 HOH L 21 421 103 HOH HOH . E 4 HOH L 22 422 19 HOH HOH . E 4 HOH L 23 423 46 HOH HOH . E 4 HOH L 24 424 52 HOH HOH . E 4 HOH L 25 425 114 HOH HOH . E 4 HOH L 26 426 57 HOH HOH . E 4 HOH L 27 427 118 HOH HOH . E 4 HOH L 28 428 33 HOH HOH . E 4 HOH L 29 429 15 HOH HOH . E 4 HOH L 30 430 60 HOH HOH . E 4 HOH L 31 431 67 HOH HOH . E 4 HOH L 32 432 42 HOH HOH . E 4 HOH L 33 433 110 HOH HOH . E 4 HOH L 34 434 16 HOH HOH . E 4 HOH L 35 435 28 HOH HOH . E 4 HOH L 36 436 31 HOH HOH . E 4 HOH L 37 437 10 HOH HOH . E 4 HOH L 38 438 53 HOH HOH . E 4 HOH L 39 439 65 HOH HOH . E 4 HOH L 40 440 104 HOH HOH . E 4 HOH L 41 441 115 HOH HOH . E 4 HOH L 42 442 21 HOH HOH . E 4 HOH L 43 443 24 HOH HOH . E 4 HOH L 44 444 48 HOH HOH . E 4 HOH L 45 445 26 HOH HOH . E 4 HOH L 46 446 22 HOH HOH . E 4 HOH L 47 447 122 HOH HOH . E 4 HOH L 48 448 111 HOH HOH . E 4 HOH L 49 449 112 HOH HOH . E 4 HOH L 50 450 59 HOH HOH . E 4 HOH L 51 451 47 HOH HOH . E 4 HOH L 52 452 63 HOH HOH . E 4 HOH L 53 453 105 HOH HOH . E 4 HOH L 54 454 91 HOH HOH . E 4 HOH L 55 455 116 HOH HOH . E 4 HOH L 56 456 106 HOH HOH . E 4 HOH L 57 457 68 HOH HOH . E 4 HOH L 58 458 119 HOH HOH . E 4 HOH L 59 459 132 HOH HOH . E 4 HOH L 60 460 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 12.027 7.664 5.007 1 39.81 0 C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . C 3 10.854 8.469 5.03 1 32.81 0 O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . C 3 12.683 7.647 3.643 1 45.08 0 C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . C 3 13.696 6.648 3.667 1 47.45 0 O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . C 3 11.728 7.364 2.492 1 47.44 0 C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . C 3 10.724 8.376 2.358 1 45.57 0 O3 GOL 301 L 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #