data_8TIC # _model_server_result.job_id 5rfzNyPCULeIiPBHjqN2FA _model_server_result.datetime_utc '2025-07-08 22:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":501}' # _entry.id 8TIC # _exptl.entry_id 8TIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(2-methylpropyl)-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TIC _cell.length_a 89.142 _cell.length_b 92.394 _cell.length_c 203.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,J,K,O,P,Q,R,U,W 1 1 B,D,F,H,L,M,N,S,T,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N ? 4 O N N ? 4 S N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG 2 n E BMA 3 E 3 BMA E 3 BMA 2 n E MAN 4 E 4 MAN E 4 MAN 2 n E MAN 5 E 5 MAN E 5 MAN 2 n F NAG 1 F 1 NAG F 1 NAG 2 n F NAG 2 F 2 NAG F 2 NAG 2 n F BMA 3 F 3 BMA F 3 BMA 2 n F MAN 4 F 4 MAN F 4 MAN 2 n F MAN 5 F 5 MAN F 5 MAN 2 n G NAG 1 G 1 NAG G 1 NAG 2 n G NAG 2 G 2 NAG G 2 NAG 2 n G BMA 3 G 3 BMA G 3 BMA 2 n G MAN 4 G 4 MAN G 4 MAN 2 n G MAN 5 G 5 MAN G 5 MAN 2 n H NAG 1 H 1 NAG H 1 NAG 2 n H NAG 2 H 2 NAG H 2 NAG 2 n H BMA 3 H 3 BMA H 3 BMA 2 n H MAN 4 H 4 MAN H 4 MAN 2 n H MAN 5 H 5 MAN H 5 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 125 A CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 138 A CYS 138 1_555 A SG CYS 235 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 367 A CYS 367 1_555 A SG CYS 397 A CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 96 B CYS 96 1_555 B SG CYS 125 B CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 138 B CYS 138 1_555 B SG CYS 235 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 367 B CYS 367 1_555 B SG CYS 397 B CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 96 C CYS 96 1_555 C SG CYS 125 C CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf8 C SG CYS 138 C CYS 138 1_555 C SG CYS 235 C CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 C SG CYS 367 C CYS 367 1_555 C SG CYS 397 C CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 96 D CYS 96 1_555 D SG CYS 125 D CYS 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 D SG CYS 138 D CYS 138 1_555 D SG CYS 235 D CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 D SG CYS 367 D CYS 367 1_555 D SG CYS 397 D CYS 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 127 A ASN 127 1_555 I C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 219 A ASN 219 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B ND2 ASN 127 B ASN 127 1_555 L C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 C ND2 ASN 219 C ASN 219 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 D ND2 ASN 219 D ASN 219 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale11 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale13 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale14 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale15 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale16 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale19 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale20 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale21 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C12 H14 N2 O3' _chem_comp.formula_weight 234.251 _chem_comp.id FKX _chem_comp.mon_nstd_flag . _chem_comp.name '3-(2-methylpropyl)-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 FKX doub 107 n n C17 C15 FKX sing 108 n n C16 C15 FKX sing 109 n n C11 N10 FKX sing 110 n n C11 N13 FKX sing 111 n n C15 C14 FKX sing 112 n n C14 N13 FKX sing 113 n n N10 C09 FKX sing 114 n n N13 C01 FKX sing 115 n n C09 C01 FKX doub 116 n y C09 C08 FKX sing 117 n y C01 C02 FKX sing 118 n y C08 C07 FKX doub 119 n y C02 C03 FKX doub 120 n y C07 C03 FKX sing 121 n y C03 C04 FKX sing 122 n n C04 O05 FKX doub 123 n n C04 O06 FKX sing 124 n n C14 H1 FKX sing 125 n n C14 H2 FKX sing 126 n n C15 H3 FKX sing 127 n n C16 H4 FKX sing 128 n n C16 H5 FKX sing 129 n n C16 H6 FKX sing 130 n n C02 H7 FKX sing 131 n n C07 H8 FKX sing 132 n n C08 H9 FKX sing 133 n n C17 H10 FKX sing 134 n n C17 H11 FKX sing 135 n n C17 H12 FKX sing 136 n n N10 H13 FKX sing 137 n n O06 H14 FKX sing 138 n n # _atom_sites.entry_id 8TIC _atom_sites.fract_transf_matrix[1][1] 0.011218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 401 401 NAG NAG . J 4 FKX A 1 402 501 FKX 234 . K 5 GOL A 1 403 601 GOL GOL . L 3 NAG B 1 401 401 NAG NAG . M 4 FKX B 1 402 501 FKX 234 . N 5 GOL B 1 403 601 GOL GOL . O 4 FKX C 1 501 501 FKX 234 . P 5 GOL C 1 502 601 GOL GOL . Q 5 GOL C 1 503 701 GOL GOL . R 6 CL C 1 504 2 CL CL . S 4 FKX D 1 501 501 FKX 234 . T 6 CL D 1 502 1 CL CL . U 7 HOH A 1 501 19 HOH HOH . U 7 HOH A 2 502 42 HOH HOH . U 7 HOH A 3 503 7 HOH HOH . U 7 HOH A 4 504 33 HOH HOH . U 7 HOH A 5 505 20 HOH HOH . U 7 HOH A 6 506 10 HOH HOH . U 7 HOH A 7 507 11 HOH HOH . U 7 HOH A 8 508 2 HOH HOH . U 7 HOH A 9 509 52 HOH HOH . U 7 HOH A 10 510 36 HOH HOH . U 7 HOH A 11 511 59 HOH HOH . U 7 HOH A 12 512 24 HOH HOH . U 7 HOH A 13 513 12 HOH HOH . U 7 HOH A 14 514 51 HOH HOH . V 7 HOH B 1 501 29 HOH HOH . V 7 HOH B 2 502 25 HOH HOH . V 7 HOH B 3 503 14 HOH HOH . V 7 HOH B 4 504 13 HOH HOH . V 7 HOH B 5 505 53 HOH HOH . V 7 HOH B 6 506 8 HOH HOH . V 7 HOH B 7 507 5 HOH HOH . V 7 HOH B 8 508 50 HOH HOH . V 7 HOH B 9 509 4 HOH HOH . V 7 HOH B 10 510 3 HOH HOH . V 7 HOH B 11 511 44 HOH HOH . V 7 HOH B 12 512 39 HOH HOH . V 7 HOH B 13 513 23 HOH HOH . V 7 HOH B 14 514 35 HOH HOH . V 7 HOH B 15 515 56 HOH HOH . V 7 HOH B 16 516 38 HOH HOH . V 7 HOH B 17 517 45 HOH HOH . V 7 HOH B 18 518 57 HOH HOH . V 7 HOH B 19 519 55 HOH HOH . V 7 HOH B 20 520 1 HOH HOH . W 7 HOH C 1 601 26 HOH HOH . W 7 HOH C 2 602 18 HOH HOH . W 7 HOH C 3 603 27 HOH HOH . W 7 HOH C 4 604 32 HOH HOH . W 7 HOH C 5 605 43 HOH HOH . W 7 HOH C 6 606 40 HOH HOH . W 7 HOH C 7 607 28 HOH HOH . W 7 HOH C 8 608 22 HOH HOH . W 7 HOH C 9 609 41 HOH HOH . W 7 HOH C 10 610 15 HOH HOH . W 7 HOH C 11 611 9 HOH HOH . W 7 HOH C 12 612 30 HOH HOH . W 7 HOH C 13 613 6 HOH HOH . W 7 HOH C 14 614 46 HOH HOH . X 7 HOH D 1 601 54 HOH HOH . X 7 HOH D 2 602 17 HOH HOH . X 7 HOH D 3 603 37 HOH HOH . X 7 HOH D 4 604 31 HOH HOH . X 7 HOH D 5 605 49 HOH HOH . X 7 HOH D 6 606 48 HOH HOH . X 7 HOH D 7 607 34 HOH HOH . X 7 HOH D 8 608 21 HOH HOH . X 7 HOH D 9 609 16 HOH HOH . X 7 HOH D 10 610 58 HOH HOH . X 7 HOH D 11 611 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 FKX . . . O 4 5.877 5.083 8.906 1 33.77 ? O12 FKX 501 C 1 HETATM 2 N N13 FKX . . . O 4 5.416 3.243 10.492 1 32.6 ? N13 FKX 501 C 1 HETATM 3 C C14 FKX . . . O 4 5.329 4.048 11.707 1 34 ? C14 FKX 501 C 1 HETATM 4 C C15 FKX . . . O 4 3.905 4.464 12.113 1 38.38 ? C15 FKX 501 C 1 HETATM 5 C C16 FKX . . . O 4 3.21 5.283 11.033 1 36.75 ? C16 FKX 501 C 1 HETATM 6 C C01 FKX . . . O 4 5.259 1.77 10.489 1 27.55 ? C01 FKX 501 C 1 HETATM 7 C C02 FKX . . . O 4 4.979 0.718 11.517 1 31.73 ? C02 FKX 501 C 1 HETATM 8 C C03 FKX . . . O 4 4.882 -0.637 11.131 1 29.83 ? C03 FKX 501 C 1 HETATM 9 C C04 FKX . . . O 4 4.597 -1.687 12.191 1 29.86 ? C04 FKX 501 C 1 HETATM 10 C C07 FKX . . . O 4 5.056 -0.997 9.743 1 37.83 ? C07 FKX 501 C 1 HETATM 11 C C08 FKX . . . O 4 5.32 -0.024 8.755 1 30.51 ? C08 FKX 501 C 1 HETATM 12 C C09 FKX . . . O 4 5.421 1.407 9.154 1 28.3 ? C09 FKX 501 C 1 HETATM 13 C C11 FKX . . . O 4 5.671 3.752 9.27 1 31.64 ? C11 FKX 501 C 1 HETATM 14 C C17 FKX . . . O 4 3.01 3.278 12.463 1 44.17 ? C17 FKX 501 C 1 HETATM 15 N N10 FKX . . . O 4 5.677 2.686 8.45 1 32.43 ? N10 FKX 501 C 1 HETATM 16 O O05 FKX . . . O 4 4.372 -2.881 11.86 1 36.43 ? O05 FKX 501 C 1 HETATM 17 O O06 FKX . . . O 4 4.583 -1.346 13.402 1 37.04 ? O06 FKX 501 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #