data_8TJ7
#
_model_server_result.job_id            kZd05EGMBL7A5fLEuv76Pg 
_model_server_result.datetime_utc      '2024-12-11 07:31:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":402}' 
#
_entry.id    8TJ7 
#
_exptl.entry_id    8TJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8TJ7 
_cell.length_a            98.329 
_cell.length_b            98.329 
_cell.length_c            270.77 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
5 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
6 ? 5 2 1 GAL NAG C1 O1 . O4 HO4 . sing 
7 ? 5 3 2 SIA GAL C2 O2 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG C 1 NAG 
3 n C NAG 2 C 2 NAG C 2 NAG 
3 n C BMA 3 C 3 BMA C 3 BMA 
3 n C MAN 4 C 4 MAN C 4 MAN 
3 n C MAN 5 C 5 MAN C 5 MAN 
4 n D NAG 1 D 1 NAG D 1 NAG 
4 n D NAG 2 D 2 NAG D 2 NAG 
4 n E NAG 1 E 1 NAG E 1 NAG 
4 n E NAG 2 E 2 NAG E 2 NAG 
4 n F NAG 1 F 1 NAG F 1 NAG 
4 n F NAG 2 F 2 NAG F 2 NAG 
5 n G NAG 1 G 1 NAG G 1 NAG 
5 n G GAL 2 G 2 GAL G 2 GAL 
5 n G SIA 3 G 3 SIA G 3 SIA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 46 A CYS 52 1_555 A SG CYS 271 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 58 A CYS 64 1_555 A SG CYS 70 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 91 A CYS 97 1_555 A SG CYS 133 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 275 A CYS 281 1_555 A SG CYS 299 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
covale ? covale1 A ND2 ASN 16 A ASN 22 1_555 I C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 32 A ASN 38 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale3 A ND2 ASN 57 A ASN 63 1_555 H C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 A ND2 ASN 159 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale5 A ND2 ASN 240 A ASN 246 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale6 A ND2 ASN 279 A ASN 285 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale7 B ND2 ASN 154 B ASN 154 1_555 J C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale10 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale11 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale16 G O6 GAL . G GAL 2 1_555 G C2 SIA . G SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 309 n n 
C1 O1 NAG sing 310 n n 
C1 O5 NAG sing 311 n n 
C1 H1 NAG sing 312 n n 
C2 C3 NAG sing 313 n n 
C2 N2 NAG sing 314 n n 
C2 H2 NAG sing 315 n n 
C3 C4 NAG sing 316 n n 
C3 O3 NAG sing 317 n n 
C3 H3 NAG sing 318 n n 
C4 C5 NAG sing 319 n n 
C4 O4 NAG sing 320 n n 
C4 H4 NAG sing 321 n n 
C5 C6 NAG sing 322 n n 
C5 O5 NAG sing 323 n n 
C5 H5 NAG sing 324 n n 
C6 O6 NAG sing 325 n n 
C6 H61 NAG sing 326 n n 
C6 H62 NAG sing 327 n n 
C7 C8 NAG sing 328 n n 
C7 N2 NAG sing 329 n n 
C7 O7 NAG doub 330 n n 
C8 H81 NAG sing 331 n n 
C8 H82 NAG sing 332 n n 
C8 H83 NAG sing 333 n n 
N2 HN2 NAG sing 334 n n 
O1 HO1 NAG sing 335 n n 
O3 HO3 NAG sing 336 n n 
O4 HO4 NAG sing 337 n n 
O6 HO6 NAG sing 338 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TJ7 
_atom_sites.fract_transf_matrix[1][1]    0.01017 
_atom_sites.fract_transf_matrix[1][2]    0.005872 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011743 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 6 NAG A 1 401 403 NAG NAG . 
I 6 NAG A 1 402 420 NAG NAG . 
J 6 NAG B 1 201 174 NAG NAG . 
K 7 HOH A 1 501 1 HOH HOH . 
K 7 HOH A 2 502 3 HOH HOH . 
K 7 HOH A 3 503 8 HOH HOH . 
K 7 HOH A 4 504 2 HOH HOH . 
K 7 HOH A 5 505 15 HOH HOH . 
K 7 HOH A 6 506 16 HOH HOH . 
K 7 HOH A 7 507 9 HOH HOH . 
K 7 HOH A 8 508 5 HOH HOH . 
K 7 HOH A 9 509 4 HOH HOH . 
K 7 HOH A 10 510 18 HOH HOH . 
K 7 HOH A 11 511 19 HOH HOH . 
L 7 HOH B 1 301 6 HOH HOH . 
L 7 HOH B 2 302 11 HOH HOH . 
L 7 HOH B 3 303 13 HOH HOH . 
L 7 HOH B 4 304 17 HOH HOH . 
L 7 HOH B 5 305 12 HOH HOH . 
L 7 HOH B 6 306 7 HOH HOH . 
L 7 HOH B 7 307 10 HOH HOH . 
L 7 HOH B 8 308 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 6 -18.844 -21.628 71.672 1 87.4 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . I 6 -18.803 -20.782 70.381 1 87.12 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . I 6 -20.085 -19.961 70.224 1 93.06 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . I 6 -21.316 -20.847 70.351 1 95.89 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . I 6 -21.267 -21.579 71.683 1 87.39 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . I 6 -22.442 -22.504 71.907 1 88.76 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . I 6 -16.5 -20.189 69.738 1 74.74 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . I 6 -15.423 -19.151 69.836 1 59.13 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . I 6 -17.643 -19.904 70.371 1 70.82 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . I 6 -20.08 -19.308 68.959 1 94.86 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . I 6 -22.501 -20.063 70.28 1 95.88 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . I 6 -20.08 -22.384 71.727 1 86.89 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . I 6 -22.758 -23.252 70.741 1 63.83 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . I 6 -16.341 -21.237 69.117 1 70.15 ? O7 NAG 402 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           14 
#