data_8TJ8
#
_model_server_result.job_id            s4FRfoFceFAp_GyRXdY2pA 
_model_server_result.datetime_utc      '2024-12-03 20:42:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tj8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":401}' 
#
_entry.id    8TJ8 
#
_exptl.entry_id    8TJ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8TJ8 
_cell.length_a            100.031 
_cell.length_b            100.031 
_cell.length_c            385.29 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TJ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 50.0155 -86.629387 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 100.031 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
? 7 I N N 
? 7 J N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
5 oligosaccharide 
6 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
5 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
6 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
7 ? 6 2 1 NAG GAL C1 O1 . O3 HO3 . sing 
8 ? 6 3 2 GAL NAG C1 O1 . O4 HO4 . sing 
9 ? 6 4 3 SIA GAL C2 O2 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 C 1 NAG C 1 NAG 
3 n C NAG 2 C 2 NAG C 2 NAG 
3 n C BMA 3 C 3 BMA C 3 BMA 
4 n D NAG 1 D 1 NAG D 1 NAG 
4 n D NAG 2 D 2 NAG D 2 NAG 
4 n D BMA 3 D 3 BMA D 3 BMA 
4 n D MAN 4 D 4 MAN D 4 MAN 
5 n E NAG 1 E 1 NAG E 1 NAG 
5 n E NAG 2 E 2 NAG E 2 NAG 
6 n F GAL 1 F 1 GAL F 1 GAL 
6 n F NAG 2 F 2 NAG F 2 NAG 
6 n F GAL 3 F 3 GAL F 3 GAL 
6 n F SIA 4 F 4 SIA F 4 SIA 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 46 A CYS 52 1_555 A SG CYS 271 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 58 A CYS 64 1_555 A SG CYS 70 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 91 A CYS 97 1_555 A SG CYS 133 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 275 A CYS 281 1_555 A SG CYS 299 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 16 A ASN 22 1_555 I C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 A ND2 ASN 32 A ASN 38 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 57 A ASN 63 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 A ND2 ASN 127 A ASN 133 1_555 H C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale5 A ND2 ASN 159 A ASN 165 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale6 A ND2 ASN 279 A ASN 285 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale7 B ND2 ASN 154 B ASN 154 1_555 J C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale9 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? 
covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale12 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale14 F O3 GAL . F GAL 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale15 F O4 NAG . F NAG 2 1_555 F C1 GAL . F GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale16 F O6 GAL . F GAL 3 1_555 F C2 SIA . F SIA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 309 n n 
C1 O1 NAG sing 310 n n 
C1 O5 NAG sing 311 n n 
C1 H1 NAG sing 312 n n 
C2 C3 NAG sing 313 n n 
C2 N2 NAG sing 314 n n 
C2 H2 NAG sing 315 n n 
C3 C4 NAG sing 316 n n 
C3 O3 NAG sing 317 n n 
C3 H3 NAG sing 318 n n 
C4 C5 NAG sing 319 n n 
C4 O4 NAG sing 320 n n 
C4 H4 NAG sing 321 n n 
C5 C6 NAG sing 322 n n 
C5 O5 NAG sing 323 n n 
C5 H5 NAG sing 324 n n 
C6 O6 NAG sing 325 n n 
C6 H61 NAG sing 326 n n 
C6 H62 NAG sing 327 n n 
C7 C8 NAG sing 328 n n 
C7 N2 NAG sing 329 n n 
C7 O7 NAG doub 330 n n 
C8 H81 NAG sing 331 n n 
C8 H82 NAG sing 332 n n 
C8 H83 NAG sing 333 n n 
N2 HN2 NAG sing 334 n n 
O1 HO1 NAG sing 335 n n 
O3 HO3 NAG sing 336 n n 
O4 HO4 NAG sing 337 n n 
O6 HO6 NAG sing 338 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TJ8 
_atom_sites.fract_transf_matrix[1][1]    0.009997 
_atom_sites.fract_transf_matrix[1][2]    0.005772 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 NAG A 1 401 403 NAG NAG . 
H 7 NAG A 1 402 416 NAG NAG . 
I 7 NAG A 1 403 420 NAG NAG . 
J 7 NAG B 1 201 174 NAG NAG . 
K 8 HOH A 1 501 21 HOH HOH . 
K 8 HOH A 2 502 6 HOH HOH . 
K 8 HOH A 3 503 14 HOH HOH . 
K 8 HOH A 4 504 8 HOH HOH . 
K 8 HOH A 5 505 23 HOH HOH . 
K 8 HOH A 6 506 16 HOH HOH . 
K 8 HOH A 7 507 40 HOH HOH . 
K 8 HOH A 8 508 4 HOH HOH . 
K 8 HOH A 9 509 46 HOH HOH . 
K 8 HOH A 10 510 10 HOH HOH . 
K 8 HOH A 11 511 29 HOH HOH . 
K 8 HOH A 12 512 3 HOH HOH . 
K 8 HOH A 13 513 39 HOH HOH . 
K 8 HOH A 14 514 18 HOH HOH . 
K 8 HOH A 15 515 19 HOH HOH . 
K 8 HOH A 16 516 11 HOH HOH . 
K 8 HOH A 17 517 7 HOH HOH . 
K 8 HOH A 18 518 38 HOH HOH . 
K 8 HOH A 19 519 43 HOH HOH . 
K 8 HOH A 20 520 13 HOH HOH . 
K 8 HOH A 21 521 20 HOH HOH . 
K 8 HOH A 22 522 52 HOH HOH . 
K 8 HOH A 23 523 30 HOH HOH . 
K 8 HOH A 24 524 41 HOH HOH . 
K 8 HOH A 25 525 5 HOH HOH . 
K 8 HOH A 26 526 37 HOH HOH . 
K 8 HOH A 27 527 12 HOH HOH . 
K 8 HOH A 28 528 9 HOH HOH . 
K 8 HOH A 29 529 31 HOH HOH . 
K 8 HOH A 30 530 51 HOH HOH . 
K 8 HOH A 31 531 45 HOH HOH . 
K 8 HOH A 32 532 44 HOH HOH . 
L 8 HOH B 1 301 32 HOH HOH . 
L 8 HOH B 2 302 28 HOH HOH . 
L 8 HOH B 3 303 24 HOH HOH . 
L 8 HOH B 4 304 15 HOH HOH . 
L 8 HOH B 5 305 25 HOH HOH . 
L 8 HOH B 6 306 2 HOH HOH . 
L 8 HOH B 7 307 27 HOH HOH . 
L 8 HOH B 8 308 26 HOH HOH . 
L 8 HOH B 9 309 1 HOH HOH . 
L 8 HOH B 10 310 33 HOH HOH . 
L 8 HOH B 11 311 42 HOH HOH . 
L 8 HOH B 12 312 49 HOH HOH . 
L 8 HOH B 13 313 17 HOH HOH . 
L 8 HOH B 14 314 34 HOH HOH . 
L 8 HOH B 15 315 35 HOH HOH . 
L 8 HOH B 16 316 36 HOH HOH . 
L 8 HOH B 17 317 47 HOH HOH . 
L 8 HOH B 18 318 48 HOH HOH . 
L 8 HOH B 19 319 50 HOH HOH . 
L 8 HOH B 20 320 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 7 18.881 -45.588 -75.772 1 76.26 ? C1 NAG 401 A 1 
HETATM 2 C C2 NAG . . . G 7 17.376 -45.449 -75.935 1 79.88 ? C2 NAG 401 A 1 
HETATM 3 C C3 NAG . . . G 7 16.697 -46.766 -75.596 1 81.56 ? C3 NAG 401 A 1 
HETATM 4 C C4 NAG . . . G 7 17.251 -47.872 -76.484 1 83 ? C4 NAG 401 A 1 
HETATM 5 C C5 NAG . . . G 7 18.775 -47.935 -76.368 1 82.23 ? C5 NAG 401 A 1 
HETATM 6 C C6 NAG . . . G 7 19.394 -48.884 -77.366 1 81.61 ? C6 NAG 401 A 1 
HETATM 7 C C7 NAG . . . G 7 16.702 -43.122 -75.585 1 84.91 ? C7 NAG 401 A 1 
HETATM 8 C C8 NAG . . . G 7 16.138 -42.123 -74.621 1 83.42 ? C8 NAG 401 A 1 
HETATM 9 N N2 NAG . . . G 7 16.847 -44.367 -75.122 1 79.98 ? N2 NAG 401 A 1 
HETATM 10 O O3 NAG . . . G 7 15.291 -46.638 -75.774 1 84.1 ? O3 NAG 401 A 1 
HETATM 11 O O4 NAG . . . G 7 16.704 -49.13 -76.107 1 86.72 ? O4 NAG 401 A 1 
HETATM 12 O O5 NAG . . . G 7 19.36 -46.646 -76.618 1 79.34 ? O5 NAG 401 A 1 
HETATM 13 O O6 NAG . . . G 7 19.774 -48.196 -78.551 1 79.38 ? O6 NAG 401 A 1 
HETATM 14 O O7 NAG . . . G 7 17.017 -42.814 -76.731 1 86.83 ? O7 NAG 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#