data_8TK3 # _model_server_result.job_id DWxLAkVfNreWI7FguJ0P3Q _model_server_result.datetime_utc '2024-10-14 04:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 8TK3 # _exptl.entry_id 8TK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TK3 _cell.length_a 34.133 _cell.length_b 52.467 _cell.length_c 100.493 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 121 A HIS 123 1_555 A N CSD 122 A CSD 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSD 122 A CSD 124 1_555 A N ARG 123 A ARG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 98 n n S C1 DMS sing 99 n n S C2 DMS sing 100 n n C1 H11 DMS sing 101 n n C1 H12 DMS sing 102 n n C1 H13 DMS sing 103 n n C2 H21 DMS sing 104 n n C2 H22 DMS sing 105 n n C2 H23 DMS sing 106 n n # _atom_sites.entry_id 8TK3 _atom_sites.fract_transf_matrix[1][1] 0.029297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I2X A 1 201 190 I2X F17 . C 2 I2X A 1 202 191 I2X F17 . D 3 DMS A 1 203 192 DMS DMS . E 3 DMS A 1 204 193 DMS DMS . F 3 DMS A 1 205 194 DMS DMS . G 4 HOH A 1 301 80 HOH HOH . G 4 HOH A 2 302 69 HOH HOH . G 4 HOH A 3 303 46 HOH HOH . G 4 HOH A 4 304 82 HOH HOH . G 4 HOH A 5 305 59 HOH HOH . G 4 HOH A 6 306 74 HOH HOH . G 4 HOH A 7 307 25 HOH HOH . G 4 HOH A 8 308 58 HOH HOH . G 4 HOH A 9 309 6 HOH HOH . G 4 HOH A 10 310 61 HOH HOH . G 4 HOH A 11 311 67 HOH HOH . G 4 HOH A 12 312 62 HOH HOH . G 4 HOH A 13 313 86 HOH HOH . G 4 HOH A 14 314 60 HOH HOH . G 4 HOH A 15 315 26 HOH HOH . G 4 HOH A 16 316 88 HOH HOH . G 4 HOH A 17 317 11 HOH HOH . G 4 HOH A 18 318 19 HOH HOH . G 4 HOH A 19 319 14 HOH HOH . G 4 HOH A 20 320 85 HOH HOH . G 4 HOH A 21 321 70 HOH HOH . G 4 HOH A 22 322 63 HOH HOH . G 4 HOH A 23 323 48 HOH HOH . G 4 HOH A 24 324 35 HOH HOH . G 4 HOH A 25 325 91 HOH HOH . G 4 HOH A 26 326 1 HOH HOH . G 4 HOH A 27 327 13 HOH HOH . G 4 HOH A 28 328 8 HOH HOH . G 4 HOH A 29 329 24 HOH HOH . G 4 HOH A 30 330 40 HOH HOH . G 4 HOH A 31 331 52 HOH HOH . G 4 HOH A 32 332 18 HOH HOH . G 4 HOH A 33 333 95 HOH HOH . G 4 HOH A 34 334 16 HOH HOH . G 4 HOH A 35 335 98 HOH HOH . G 4 HOH A 36 336 90 HOH HOH . G 4 HOH A 37 337 43 HOH HOH . G 4 HOH A 38 338 12 HOH HOH . G 4 HOH A 39 339 65 HOH HOH . G 4 HOH A 40 340 83 HOH HOH . G 4 HOH A 41 341 30 HOH HOH . G 4 HOH A 42 342 7 HOH HOH . G 4 HOH A 43 343 39 HOH HOH . G 4 HOH A 44 344 97 HOH HOH . G 4 HOH A 45 345 102 HOH HOH . G 4 HOH A 46 346 36 HOH HOH . G 4 HOH A 47 347 23 HOH HOH . G 4 HOH A 48 348 29 HOH HOH . G 4 HOH A 49 349 41 HOH HOH . G 4 HOH A 50 350 21 HOH HOH . G 4 HOH A 51 351 5 HOH HOH . G 4 HOH A 52 352 56 HOH HOH . G 4 HOH A 53 353 89 HOH HOH . G 4 HOH A 54 354 2 HOH HOH . G 4 HOH A 55 355 34 HOH HOH . G 4 HOH A 56 356 9 HOH HOH . G 4 HOH A 57 357 10 HOH HOH . G 4 HOH A 58 358 57 HOH HOH . G 4 HOH A 59 359 71 HOH HOH . G 4 HOH A 60 360 38 HOH HOH . G 4 HOH A 61 361 103 HOH HOH . G 4 HOH A 62 362 42 HOH HOH . G 4 HOH A 63 363 4 HOH HOH . G 4 HOH A 64 364 76 HOH HOH . G 4 HOH A 65 365 100 HOH HOH . G 4 HOH A 66 366 50 HOH HOH . G 4 HOH A 67 367 3 HOH HOH . G 4 HOH A 68 368 81 HOH HOH . G 4 HOH A 69 369 22 HOH HOH . G 4 HOH A 70 370 37 HOH HOH . G 4 HOH A 71 371 64 HOH HOH . G 4 HOH A 72 372 28 HOH HOH . G 4 HOH A 73 373 15 HOH HOH . G 4 HOH A 74 374 44 HOH HOH . G 4 HOH A 75 375 33 HOH HOH . G 4 HOH A 76 376 17 HOH HOH . G 4 HOH A 77 377 27 HOH HOH . G 4 HOH A 78 378 73 HOH HOH . G 4 HOH A 79 379 47 HOH HOH . G 4 HOH A 80 380 101 HOH HOH . G 4 HOH A 81 381 20 HOH HOH . G 4 HOH A 82 382 79 HOH HOH . G 4 HOH A 83 383 45 HOH HOH . G 4 HOH A 84 384 96 HOH HOH . G 4 HOH A 85 385 93 HOH HOH . G 4 HOH A 86 386 92 HOH HOH . G 4 HOH A 87 387 53 HOH HOH . G 4 HOH A 88 388 72 HOH HOH . G 4 HOH A 89 389 54 HOH HOH . G 4 HOH A 90 390 49 HOH HOH . G 4 HOH A 91 391 68 HOH HOH . G 4 HOH A 92 392 104 HOH HOH . G 4 HOH A 93 393 32 HOH HOH . G 4 HOH A 94 394 31 HOH HOH . G 4 HOH A 95 395 78 HOH HOH . G 4 HOH A 96 396 66 HOH HOH . G 4 HOH A 97 397 77 HOH HOH . G 4 HOH A 98 398 106 HOH HOH . G 4 HOH A 99 399 87 HOH HOH . G 4 HOH A 100 400 51 HOH HOH . G 4 HOH A 101 401 94 HOH HOH . G 4 HOH A 102 402 75 HOH HOH . G 4 HOH A 103 403 55 HOH HOH . G 4 HOH A 104 404 99 HOH HOH . G 4 HOH A 105 405 84 HOH HOH . G 4 HOH A 106 406 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 3 -3.463 -20.97 -5.327 1 83.18 ? S DMS 205 A 1 HETATM 2 O O DMS . . . F 3 -4.634 -20.047 -5.01 1 67.39 ? O DMS 205 A 1 HETATM 3 C C1 DMS . . . F 3 -4.109 -22.625 -5.303 1 77.11 ? C1 DMS 205 A 1 HETATM 4 C C2 DMS . . . F 3 -2.486 -21.053 -3.85 1 77.4 ? C2 DMS 205 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #