data_8TKF # _model_server_result.job_id zw1mfE93Q6_On-3W84e2MA _model_server_result.datetime_utc '2024-10-19 03:49:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":2702}' # _entry.id 8TKF # _exptl.entry_id 8TKF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TKF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 O N N ? 2 X N N ? 2 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 2538 A CYS 2538 1_555 A SG CYS 2541 A CYS 2541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? disulf ? disulf3 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 2538 B CYS 2538 1_555 B SG CYS 2541 B CYS 2541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? disulf ? disulf5 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 C SG CYS 2538 C CYS 2538 1_555 C SG CYS 2541 C CYS 2541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? disulf ? disulf7 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 2538 D CYS 2538 1_555 D SG CYS 2541 D CYS 2541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc1 A OE1 GLU 1882 A GLU 1882 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A OE2 GLU 1882 A GLU 1882 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 A OE1 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc5 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc6 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc7 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc8 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc9 B OE1 GLU 1882 B GLU 1882 1_555 Q CA CA . B CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 B OE2 GLU 1882 B GLU 1882 1_555 Q CA CA . B CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc11 B OE1 GLU 1946 B GLU 1946 1_555 Q CA CA . B CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc12 B OE2 GLU 1946 B GLU 1946 1_555 Q CA CA . B CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc13 B SG CYS 2538 B CYS 2538 1_555 O ZN ZN . B ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 B SG CYS 2541 B CYS 2541 1_555 O ZN ZN . B ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc15 B NE2 HIS 2558 B HIS 2558 1_555 O ZN ZN . B ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc16 B ND1 HIS 2563 B HIS 2563 1_555 O ZN ZN . B ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc17 C OE1 GLU 1882 C GLU 1882 1_555 Z CA CA . C CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc18 C OE2 GLU 1882 C GLU 1882 1_555 Z CA CA . C CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc19 C OE1 GLU 1946 C GLU 1946 1_555 Z CA CA . C CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc20 C OE2 GLU 1946 C GLU 1946 1_555 Z CA CA . C CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc21 C SG CYS 2538 C CYS 2538 1_555 X ZN ZN . C ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc22 C SG CYS 2541 C CYS 2541 1_555 X ZN ZN . C ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc23 C NE2 HIS 2558 C HIS 2558 1_555 X ZN ZN . C ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc24 C ND1 HIS 2563 C HIS 2563 1_555 X ZN ZN . C ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc25 D OE1 GLU 1882 D GLU 1882 1_555 IA CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc26 D OE2 GLU 1882 D GLU 1882 1_555 IA CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc27 D OE1 GLU 1946 D GLU 1946 1_555 IA CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc28 D OE2 GLU 1946 D GLU 1946 1_555 IA CA CA . D CA 2704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc29 D SG CYS 2538 D CYS 2538 1_555 GA ZN ZN . D ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc30 D SG CYS 2541 D CYS 2541 1_555 GA ZN ZN . D ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc31 D NE2 HIS 2558 D HIS 2558 1_555 GA ZN ZN . D ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc32 D ND1 HIS 2563 D HIS 2563 1_555 GA ZN ZN . D ZN 2702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8TKF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 3001 3001 ZN ZN . F 3 I3P A 1 3002 3002 I3P I3P . G 4 CA A 1 3003 3003 CA CA . H 5 ATP A 1 3004 3005 ATP ATP . I 6 PCW A 1 3005 3006 PCW PCW . J 6 PCW A 1 3006 3007 PCW PCW . K 6 PCW A 1 3007 3009 PCW PCW . L 6 PCW A 1 3008 3010 PCW PCW . M 7 PT5 A 1 3009 3008 PT5 PT5 . N 7 PT5 B 1 2701 3008 PT5 PT5 . O 2 ZN B 1 2702 3001 ZN ZN . P 3 I3P B 1 2703 3002 I3P I3P . Q 4 CA B 1 2704 3003 CA CA . R 5 ATP B 1 2705 3005 ATP ATP . S 6 PCW B 1 2706 3006 PCW PCW . T 6 PCW B 1 2707 3007 PCW PCW . U 6 PCW B 1 2708 3009 PCW PCW . V 6 PCW B 1 2709 3010 PCW PCW . W 7 PT5 C 1 2701 3008 PT5 PT5 . X 2 ZN C 1 2702 3001 ZN ZN . Y 3 I3P C 1 2703 3002 I3P I3P . Z 4 CA C 1 2704 3003 CA CA . AA 5 ATP C 1 2705 3005 ATP ATP . BA 6 PCW C 1 2706 3006 PCW PCW . CA 6 PCW C 1 2707 3007 PCW PCW . DA 6 PCW C 1 2708 3009 PCW PCW . EA 6 PCW C 1 2709 3010 PCW PCW . FA 7 PT5 D 1 2701 3008 PT5 PT5 . GA 2 ZN D 1 2702 3001 ZN ZN . HA 3 I3P D 1 2703 3002 I3P I3P . IA 4 CA D 1 2704 3003 CA CA . JA 5 ATP D 1 2705 3005 ATP ATP . KA 6 PCW D 1 2706 3006 PCW PCW . LA 6 PCW D 1 2707 3007 PCW PCW . MA 6 PCW D 1 2708 3009 PCW PCW . NA 6 PCW D 1 2709 3010 PCW PCW . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x 210.984 _atom_site.Cartn_y 237.536 _atom_site.Cartn_z 237.313 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 121.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2702 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 373 _model_server_stats.parse_time_ms 95 _model_server_stats.create_model_time_ms 150 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #