data_8TKP # _model_server_result.job_id JkZSPjubPDaJLJqij32Y5g _model_server_result.datetime_utc '2024-11-17 17:43:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VA","auth_seq_id":1315}' # _entry.id 8TKP # _exptl.entry_id 8TKP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 310.601 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DOCOSANE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TKP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 W N N ? 6 BA N N ? 6 HA N N ? 6 VA N N ? 6 BB N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 H 1 NAG H 1 NAG 4 n G NAG 2 H 2 NAG H 2 NAG 5 n H NAG 1 G 1 NAG G 1 NAG 5 n H NAG 2 G 2 NAG G 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 594 A CYS 594 1_555 A SG CYS 743 A CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 594 D CYS 594 1_555 D SG CYS 743 D CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 225 A ASN 225 1_555 H C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 748 A ASN 748 1_555 X C1 NAG . A NAG 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C SG CYS 43 C CYS 43 1_555 GA C1 PLM . C PLM 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 C SG CYS 44 C CYS 44 1_555 EA C1 PLM . C PLM 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 D ND2 ASN 225 D ASN 225 1_555 G C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 D ND2 ASN 748 D ASN 748 1_555 WA C1 NAG . D NAG 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 F SG CYS 43 F CYS 43 1_555 FB C1 PLM . F PLM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale8 F SG CYS 44 F CYS 44 1_555 EB C1 PLM . F PLM 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale9 G O3 NAG . H NAG 1 1_555 G C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 B OD1 ASP 130 B ASP 130 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc2 B OD1 ASP 132 B ASP 132 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 B OD2 ASP 132 B ASP 132 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 B OD1 ASP 134 B ASP 134 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 B OD2 ASP 134 B ASP 134 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc6 B O LEU 136 B LEU 136 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 B OD2 ASP 141 B ASP 141 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 B OD1 ASP 175 B ASP 175 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 B OD2 ASP 175 B ASP 175 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 B O SER 177 B SER 177 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc11 B OE1 GLU 182 B GLU 182 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 B OE2 GLU 182 B GLU 182 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 E OD1 ASP 132 E ASP 132 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 E OD2 ASP 132 E ASP 132 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 E OD1 ASP 134 E ASP 134 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc16 E OD2 ASP 134 E ASP 134 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc17 E O LEU 136 E LEU 136 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc18 E OD2 ASP 141 E ASP 141 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc19 E OD1 ASP 175 E ASP 175 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 E OD2 ASP 175 E ASP 175 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc21 E O SER 177 E SER 177 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc22 E OE1 GLU 182 E GLU 182 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc23 E OE2 GLU 182 E GLU 182 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C22 H46' _chem_comp.formula_weight 310.601 _chem_comp.id TWT _chem_comp.mon_nstd_flag . _chem_comp.name DOCOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TWT sing 665 n n C1 H1C1 TWT sing 666 n n C1 H1C2 TWT sing 667 n n C1 H1C3 TWT sing 668 n n C2 C3 TWT sing 669 n n C2 H2C1 TWT sing 670 n n C2 H2C2 TWT sing 671 n n C3 C4 TWT sing 672 n n C3 H3C1 TWT sing 673 n n C3 H3C2 TWT sing 674 n n C4 C5 TWT sing 675 n n C4 H4C1 TWT sing 676 n n C4 H4C2 TWT sing 677 n n C5 C6 TWT sing 678 n n C5 H5C1 TWT sing 679 n n C5 H5C2 TWT sing 680 n n C6 C7 TWT sing 681 n n C6 H6C1 TWT sing 682 n n C6 H6C2 TWT sing 683 n n C7 C8 TWT sing 684 n n C7 H7C1 TWT sing 685 n n C7 H7C2 TWT sing 686 n n C8 C9 TWT sing 687 n n C8 H8C1 TWT sing 688 n n C8 H8C2 TWT sing 689 n n C9 C10 TWT sing 690 n n C9 H9C1 TWT sing 691 n n C9 H9C2 TWT sing 692 n n C10 C11 TWT sing 693 n n C10 H101 TWT sing 694 n n C10 H102 TWT sing 695 n n C11 C12 TWT sing 696 n n C11 H111 TWT sing 697 n n C11 H112 TWT sing 698 n n C12 C13 TWT sing 699 n n C12 H121 TWT sing 700 n n C12 H122 TWT sing 701 n n C13 C14 TWT sing 702 n n C13 H131 TWT sing 703 n n C13 H132 TWT sing 704 n n C14 C15 TWT sing 705 n n C14 H141 TWT sing 706 n n C14 H142 TWT sing 707 n n C15 C16 TWT sing 708 n n C15 H151 TWT sing 709 n n C15 H152 TWT sing 710 n n C16 C17 TWT sing 711 n n C16 H161 TWT sing 712 n n C16 H162 TWT sing 713 n n C17 C18 TWT sing 714 n n C17 H171 TWT sing 715 n n C17 H172 TWT sing 716 n n C18 C19 TWT sing 717 n n C18 H181 TWT sing 718 n n C18 H182 TWT sing 719 n n C19 C20 TWT sing 720 n n C19 H191 TWT sing 721 n n C19 H192 TWT sing 722 n n C20 C21 TWT sing 723 n n C20 H201 TWT sing 724 n n C20 H202 TWT sing 725 n n C21 C22 TWT sing 726 n n C21 H211 TWT sing 727 n n C21 H212 TWT sing 728 n n C22 H221 TWT sing 729 n n C22 H222 TWT sing 730 n n C22 H223 TWT sing 731 n n # _atom_sites.entry_id 8TKP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 TWT A 1 1301 1831 TWT TWT . J 7 PEE A 1 1302 1832 PEE PEE . K 8 R16 A 1 1303 1833 R16 R16 . L 8 R16 A 1 1304 1834 R16 R16 . M 9 CLR A 1 1305 1835 CLR CLR . N 8 R16 A 1 1306 1836 R16 R16 . O 8 R16 A 1 1307 1837 R16 R16 . P 8 R16 A 1 1308 1839 R16 R16 . Q 8 R16 A 1 1309 1840 R16 R16 . R 8 R16 A 1 1310 1841 R16 R16 . S 7 PEE A 1 1311 1844 PEE PEE . T 7 PEE A 1 1312 1845 PEE PEE . U 8 R16 A 1 1313 1846 R16 R16 . V 7 PEE A 1 1314 1847 PEE PEE . W 6 TWT A 1 1315 1848 TWT TWT . X 10 NAG A 1 1316 1849 NAG NAG . Y 8 R16 A 1 1317 206 R16 R16 . Z 11 CA B 1 301 301 CA CA . AA 11 CA B 1 302 302 CA CA . BA 6 TWT C 1 201 1830 TWT TWT . CA 8 R16 C 1 202 201 R16 R16 . DA 8 R16 C 1 203 202 R16 R16 . EA 12 PLM C 1 204 203 PLM PLM . FA 7 PEE C 1 205 205 PEE PEE . GA 12 PLM C 1 206 204 PLM PLM . HA 6 TWT D 1 1301 1831 TWT TWT . IA 7 PEE D 1 1302 1832 PEE PEE . JA 8 R16 D 1 1303 1833 R16 R16 . KA 8 R16 D 1 1304 1834 R16 R16 . LA 9 CLR D 1 1305 1835 CLR CLR . MA 8 R16 D 1 1306 1836 R16 R16 . NA 8 R16 D 1 1307 1837 R16 R16 . OA 8 R16 D 1 1308 1839 R16 R16 . PA 8 R16 D 1 1309 1840 R16 R16 . QA 8 R16 D 1 1310 1841 R16 R16 . RA 7 PEE D 1 1311 1844 PEE PEE . SA 7 PEE D 1 1312 1845 PEE PEE . TA 8 R16 D 1 1313 1846 R16 R16 . UA 7 PEE D 1 1314 1847 PEE PEE . VA 6 TWT D 1 1315 1848 TWT TWT . WA 10 NAG D 1 1316 1849 NAG NAG . XA 7 PEE D 1 1317 205 PEE PEE . YA 8 R16 D 1 1318 206 R16 R16 . ZA 11 CA E 1 301 301 CA CA . AB 11 CA E 1 302 302 CA CA . BB 6 TWT F 1 201 1830 TWT TWT . CB 8 R16 F 1 202 201 R16 R16 . DB 8 R16 F 1 203 202 R16 R16 . EB 12 PLM F 1 204 203 PLM PLM . FB 12 PLM F 1 205 204 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TWT . . . VA 6 182.283 157.788 211.74 1 77.93 ? C1 TWT 1315 D 1 HETATM 2 C C2 TWT . . . VA 6 181.597 159.131 211.522 1 77.93 ? C2 TWT 1315 D 1 HETATM 3 C C3 TWT . . . VA 6 180.083 158.972 211.471 1 77.93 ? C3 TWT 1315 D 1 HETATM 4 C C4 TWT . . . VA 6 179.402 160.308 211.197 1 77.93 ? C4 TWT 1315 D 1 HETATM 5 C C5 TWT . . . VA 6 177.885 160.162 211.227 1 77.93 ? C5 TWT 1315 D 1 HETATM 6 C C6 TWT . . . VA 6 177.196 161.494 210.948 1 77.93 ? C6 TWT 1315 D 1 HETATM 7 C C7 TWT . . . VA 6 177.42 161.94 209.508 1 77.93 ? C7 TWT 1315 D 1 HETATM 8 C C8 TWT . . . VA 6 176.567 163.161 209.182 1 77.93 ? C8 TWT 1315 D 1 HETATM 9 C C9 TWT . . . VA 6 176.482 163.391 207.678 1 77.93 ? C9 TWT 1315 D 1 HETATM 10 C C10 TWT . . . VA 6 175.325 164.323 207.34 1 77.93 ? C10 TWT 1315 D 1 HETATM 11 C C11 TWT . . . VA 6 174.824 164.079 205.92 1 77.93 ? C11 TWT 1315 D 1 HETATM 12 C C12 TWT . . . VA 6 173.309 164.231 205.846 1 77.93 ? C12 TWT 1315 D 1 HETATM 13 C C13 TWT . . . VA 6 172.899 165.587 205.283 1 77.93 ? C13 TWT 1315 D 1 HETATM 14 C C14 TWT . . . VA 6 172.894 165.566 203.76 1 77.93 ? C14 TWT 1315 D 1 HETATM 15 C C15 TWT . . . VA 6 172.356 166.873 203.193 1 77.93 ? C15 TWT 1315 D 1 HETATM 16 C C16 TWT . . . VA 6 172.233 166.796 201.678 1 77.93 ? C16 TWT 1315 D 1 HETATM 17 C C17 TWT . . . VA 6 171.793 168.132 201.093 1 77.93 ? C17 TWT 1315 D 1 HETATM 18 C C18 TWT . . . VA 6 171.702 168.054 199.574 1 77.93 ? C18 TWT 1315 D 1 HETATM 19 C C19 TWT . . . VA 6 171.425 169.426 198.971 1 77.93 ? C19 TWT 1315 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #