data_8TKP
#
_model_server_result.job_id            E9P7Ppg2CuxkDmMZpkWmbQ 
_model_server_result.datetime_utc      '2024-11-17 17:48:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tkp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"WA","auth_seq_id":1316}' 
#
_entry.id    8TKP 
#
_exptl.entry_id    8TKP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TKP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 X N N 
? 10 WA N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
4 oligosaccharide 
5 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 4 2 1 NAG NAG C1 O1 . O3 HO3 . sing 
2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
4 n G NAG 1 H 1 NAG H 1 NAG 
4 n G NAG 2 H 2 NAG H 2 NAG 
5 n H NAG 1 G 1 NAG G 1 NAG 
5 n H NAG 2 G 2 NAG G 2 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 594 A CYS 594 1_555 A SG CYS 743 A CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 594 D CYS 594 1_555 D SG CYS 743 D CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 225 A ASN 225 1_555 H C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale2 A ND2 ASN 748 A ASN 748 1_555 X C1 NAG . A NAG 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 C SG CYS 43 C CYS 43 1_555 GA C1 PLM . C PLM 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale4 C SG CYS 44 C CYS 44 1_555 EA C1 PLM . C PLM 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale5 D ND2 ASN 225 D ASN 225 1_555 G C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale6 D ND2 ASN 748 D ASN 748 1_555 WA C1 NAG . D NAG 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale7 F SG CYS 43 F CYS 43 1_555 FB C1 PLM . F PLM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale8 F SG CYS 44 F CYS 44 1_555 EB C1 PLM . F PLM 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale9 G O3 NAG . H NAG 1 1_555 G C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale10 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
metalc ? metalc1 B OD1 ASP 130 B ASP 130 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc2 B OD1 ASP 132 B ASP 132 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc3 B OD2 ASP 132 B ASP 132 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc4 B OD1 ASP 134 B ASP 134 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc5 B OD2 ASP 134 B ASP 134 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? 
metalc ? metalc6 B O LEU 136 B LEU 136 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc7 B OD2 ASP 141 B ASP 141 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 B OD1 ASP 175 B ASP 175 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc9 B OD2 ASP 175 B ASP 175 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc10 B O SER 177 B SER 177 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc11 B OE1 GLU 182 B GLU 182 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc12 B OE2 GLU 182 B GLU 182 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc13 E OD1 ASP 132 E ASP 132 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc14 E OD2 ASP 132 E ASP 132 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc15 E OD1 ASP 134 E ASP 134 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc16 E OD2 ASP 134 E ASP 134 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? 
metalc ? metalc17 E O LEU 136 E LEU 136 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc18 E OD2 ASP 141 E ASP 141 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc19 E OD1 ASP 175 E ASP 175 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc20 E OD2 ASP 175 E ASP 175 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc21 E O SER 177 E SER 177 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc22 E OE1 GLU 182 E GLU 182 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc23 E OE2 GLU 182 E GLU 182 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 312 n n 
C1 O1 NAG sing 313 n n 
C1 O5 NAG sing 314 n n 
C1 H1 NAG sing 315 n n 
C2 C3 NAG sing 316 n n 
C2 N2 NAG sing 317 n n 
C2 H2 NAG sing 318 n n 
C3 C4 NAG sing 319 n n 
C3 O3 NAG sing 320 n n 
C3 H3 NAG sing 321 n n 
C4 C5 NAG sing 322 n n 
C4 O4 NAG sing 323 n n 
C4 H4 NAG sing 324 n n 
C5 C6 NAG sing 325 n n 
C5 O5 NAG sing 326 n n 
C5 H5 NAG sing 327 n n 
C6 O6 NAG sing 328 n n 
C6 H61 NAG sing 329 n n 
C6 H62 NAG sing 330 n n 
C7 C8 NAG sing 331 n n 
C7 N2 NAG sing 332 n n 
C7 O7 NAG doub 333 n n 
C8 H81 NAG sing 334 n n 
C8 H82 NAG sing 335 n n 
C8 H83 NAG sing 336 n n 
N2 HN2 NAG sing 337 n n 
O1 HO1 NAG sing 338 n n 
O3 HO3 NAG sing 339 n n 
O4 HO4 NAG sing 340 n n 
O6 HO6 NAG sing 341 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TKP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 6 TWT A 1 1301 1831 TWT TWT . 
J 7 PEE A 1 1302 1832 PEE PEE . 
K 8 R16 A 1 1303 1833 R16 R16 . 
L 8 R16 A 1 1304 1834 R16 R16 . 
M 9 CLR A 1 1305 1835 CLR CLR . 
N 8 R16 A 1 1306 1836 R16 R16 . 
O 8 R16 A 1 1307 1837 R16 R16 . 
P 8 R16 A 1 1308 1839 R16 R16 . 
Q 8 R16 A 1 1309 1840 R16 R16 . 
R 8 R16 A 1 1310 1841 R16 R16 . 
S 7 PEE A 1 1311 1844 PEE PEE . 
T 7 PEE A 1 1312 1845 PEE PEE . 
U 8 R16 A 1 1313 1846 R16 R16 . 
V 7 PEE A 1 1314 1847 PEE PEE . 
W 6 TWT A 1 1315 1848 TWT TWT . 
X 10 NAG A 1 1316 1849 NAG NAG . 
Y 8 R16 A 1 1317 206 R16 R16 . 
Z 11 CA B 1 301 301 CA CA . 
AA 11 CA B 1 302 302 CA CA . 
BA 6 TWT C 1 201 1830 TWT TWT . 
CA 8 R16 C 1 202 201 R16 R16 . 
DA 8 R16 C 1 203 202 R16 R16 . 
EA 12 PLM C 1 204 203 PLM PLM . 
FA 7 PEE C 1 205 205 PEE PEE . 
GA 12 PLM C 1 206 204 PLM PLM . 
HA 6 TWT D 1 1301 1831 TWT TWT . 
IA 7 PEE D 1 1302 1832 PEE PEE . 
JA 8 R16 D 1 1303 1833 R16 R16 . 
KA 8 R16 D 1 1304 1834 R16 R16 . 
LA 9 CLR D 1 1305 1835 CLR CLR . 
MA 8 R16 D 1 1306 1836 R16 R16 . 
NA 8 R16 D 1 1307 1837 R16 R16 . 
OA 8 R16 D 1 1308 1839 R16 R16 . 
PA 8 R16 D 1 1309 1840 R16 R16 . 
QA 8 R16 D 1 1310 1841 R16 R16 . 
RA 7 PEE D 1 1311 1844 PEE PEE . 
SA 7 PEE D 1 1312 1845 PEE PEE . 
TA 8 R16 D 1 1313 1846 R16 R16 . 
UA 7 PEE D 1 1314 1847 PEE PEE . 
VA 6 TWT D 1 1315 1848 TWT TWT . 
WA 10 NAG D 1 1316 1849 NAG NAG . 
XA 7 PEE D 1 1317 205 PEE PEE . 
YA 8 R16 D 1 1318 206 R16 R16 . 
ZA 11 CA E 1 301 301 CA CA . 
AB 11 CA E 1 302 302 CA CA . 
BB 6 TWT F 1 201 1830 TWT TWT . 
CB 8 R16 F 1 202 201 R16 R16 . 
DB 8 R16 F 1 203 202 R16 R16 . 
EB 12 PLM F 1 204 203 PLM PLM . 
FB 12 PLM F 1 205 204 PLM PLM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . WA 10 172.58 175.977 224.798 1 103.33 ? C1 NAG 1316 D 1 
HETATM 2 C C2 NAG . . . WA 10 173.644 177.065 224.914 1 103.33 ? C2 NAG 1316 D 1 
HETATM 3 C C3 NAG . . . WA 10 173.884 177.386 226.373 1 103.33 ? C3 NAG 1316 D 1 
HETATM 4 C C4 NAG . . . WA 10 172.622 178.011 226.937 1 103.33 ? C4 NAG 1316 D 1 
HETATM 5 C C5 NAG . . . WA 10 171.38 177.157 226.682 1 103.33 ? C5 NAG 1316 D 1 
HETATM 6 C C6 NAG . . . WA 10 170.262 178.023 226.112 1 103.33 ? C6 NAG 1316 D 1 
HETATM 7 C C7 NAG . . . WA 10 175.044 176.565 222.999 1 103.33 ? C7 NAG 1316 D 1 
HETATM 8 C C8 NAG . . . WA 10 175.833 175.402 222.474 1 103.33 ? C8 NAG 1316 D 1 
HETATM 9 N N2 NAG . . . WA 10 174.879 176.601 224.317 1 103.33 ? N2 NAG 1316 D 1 
HETATM 10 O O3 NAG . . . WA 10 174.972 178.308 226.491 1 103.33 ? O3 NAG 1316 D 1 
HETATM 11 O O4 NAG . . . WA 10 172.782 178.181 228.349 1 103.33 ? O4 NAG 1316 D 1 
HETATM 12 O O5 NAG . . . WA 10 171.55 176.034 225.802 1 103.33 ? O5 NAG 1316 D 1 
HETATM 13 O O6 NAG . . . WA 10 169.245 177.177 225.564 1 103.33 ? O6 NAG 1316 D 1 
HETATM 14 O O7 NAG . . . WA 10 174.582 177.422 222.265 1 103.33 ? O7 NAG 1316 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#