data_8TKP # _model_server_result.job_id x7zC_SC3zVqZ3Xc--dPOdw _model_server_result.datetime_utc '2024-11-17 17:49:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1317}' # _entry.id 8TKP # _exptl.entry_id 8TKP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 226.441 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TKP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 L N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 U N N ? 8 Y N N ? 8 CA N N ? 8 DA N N ? 8 JA N N ? 8 KA N N ? 8 MA N N ? 8 NA N N ? 8 OA N N ? 8 PA N N ? 8 QA N N ? 8 TA N N ? 8 YA N N ? 8 CB N N ? 8 DB N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 H 1 NAG H 1 NAG 4 n G NAG 2 H 2 NAG H 2 NAG 5 n H NAG 1 G 1 NAG G 1 NAG 5 n H NAG 2 G 2 NAG G 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 594 A CYS 594 1_555 A SG CYS 743 A CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 D SG CYS 594 D CYS 594 1_555 D SG CYS 743 D CYS 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 225 A ASN 225 1_555 H C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 748 A ASN 748 1_555 X C1 NAG . A NAG 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 C SG CYS 43 C CYS 43 1_555 GA C1 PLM . C PLM 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale4 C SG CYS 44 C CYS 44 1_555 EA C1 PLM . C PLM 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 D ND2 ASN 225 D ASN 225 1_555 G C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 D ND2 ASN 748 D ASN 748 1_555 WA C1 NAG . D NAG 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 F SG CYS 43 F CYS 43 1_555 FB C1 PLM . F PLM 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale8 F SG CYS 44 F CYS 44 1_555 EB C1 PLM . F PLM 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale9 G O3 NAG . H NAG 1 1_555 G C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 B OD1 ASP 130 B ASP 130 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc2 B OD1 ASP 132 B ASP 132 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 B OD2 ASP 132 B ASP 132 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 B OD1 ASP 134 B ASP 134 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 B OD2 ASP 134 B ASP 134 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc6 B O LEU 136 B LEU 136 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 B OD2 ASP 141 B ASP 141 1_555 AA CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc8 B OD1 ASP 175 B ASP 175 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc9 B OD2 ASP 175 B ASP 175 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 B O SER 177 B SER 177 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc11 B OE1 GLU 182 B GLU 182 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc12 B OE2 GLU 182 B GLU 182 1_555 Z CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 E OD1 ASP 132 E ASP 132 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 E OD2 ASP 132 E ASP 132 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 E OD1 ASP 134 E ASP 134 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc16 E OD2 ASP 134 E ASP 134 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc17 E O LEU 136 E LEU 136 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc18 E OD2 ASP 141 E ASP 141 1_555 AB CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc19 E OD1 ASP 175 E ASP 175 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc20 E OD2 ASP 175 E ASP 175 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc21 E O SER 177 E SER 177 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc22 E OE1 GLU 182 E GLU 182 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc23 E OE2 GLU 182 E GLU 182 1_555 ZA CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R16 sing 559 n n C27 H271 R16 sing 560 n n C27 H272 R16 sing 561 n n C27 H273 R16 sing 562 n n C28 C29 R16 sing 563 n n C28 H281 R16 sing 564 n n C28 H282 R16 sing 565 n n C29 C30 R16 sing 566 n n C29 H291 R16 sing 567 n n C29 H292 R16 sing 568 n n C30 C31 R16 sing 569 n n C30 H301 R16 sing 570 n n C30 H302 R16 sing 571 n n C31 C32 R16 sing 572 n n C31 H311 R16 sing 573 n n C31 H312 R16 sing 574 n n C32 C33 R16 sing 575 n n C32 H321 R16 sing 576 n n C32 H322 R16 sing 577 n n C33 C34 R16 sing 578 n n C33 H331 R16 sing 579 n n C33 H332 R16 sing 580 n n C34 C35 R16 sing 581 n n C34 H341 R16 sing 582 n n C34 H342 R16 sing 583 n n C35 C36 R16 sing 584 n n C35 H351 R16 sing 585 n n C35 H352 R16 sing 586 n n C36 C37 R16 sing 587 n n C36 H361 R16 sing 588 n n C36 H362 R16 sing 589 n n C37 C38 R16 sing 590 n n C37 H371 R16 sing 591 n n C37 H372 R16 sing 592 n n C38 C39 R16 sing 593 n n C38 H381 R16 sing 594 n n C38 H382 R16 sing 595 n n C39 C40 R16 sing 596 n n C39 H391 R16 sing 597 n n C39 H392 R16 sing 598 n n C40 C41 R16 sing 599 n n C40 H401 R16 sing 600 n n C40 H402 R16 sing 601 n n C41 C42 R16 sing 602 n n C41 H411 R16 sing 603 n n C41 H412 R16 sing 604 n n C42 H421 R16 sing 605 n n C42 H422 R16 sing 606 n n C42 H423 R16 sing 607 n n # _atom_sites.entry_id 8TKP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 TWT A 1 1301 1831 TWT TWT . J 7 PEE A 1 1302 1832 PEE PEE . K 8 R16 A 1 1303 1833 R16 R16 . L 8 R16 A 1 1304 1834 R16 R16 . M 9 CLR A 1 1305 1835 CLR CLR . N 8 R16 A 1 1306 1836 R16 R16 . O 8 R16 A 1 1307 1837 R16 R16 . P 8 R16 A 1 1308 1839 R16 R16 . Q 8 R16 A 1 1309 1840 R16 R16 . R 8 R16 A 1 1310 1841 R16 R16 . S 7 PEE A 1 1311 1844 PEE PEE . T 7 PEE A 1 1312 1845 PEE PEE . U 8 R16 A 1 1313 1846 R16 R16 . V 7 PEE A 1 1314 1847 PEE PEE . W 6 TWT A 1 1315 1848 TWT TWT . X 10 NAG A 1 1316 1849 NAG NAG . Y 8 R16 A 1 1317 206 R16 R16 . Z 11 CA B 1 301 301 CA CA . AA 11 CA B 1 302 302 CA CA . BA 6 TWT C 1 201 1830 TWT TWT . CA 8 R16 C 1 202 201 R16 R16 . DA 8 R16 C 1 203 202 R16 R16 . EA 12 PLM C 1 204 203 PLM PLM . FA 7 PEE C 1 205 205 PEE PEE . GA 12 PLM C 1 206 204 PLM PLM . HA 6 TWT D 1 1301 1831 TWT TWT . IA 7 PEE D 1 1302 1832 PEE PEE . JA 8 R16 D 1 1303 1833 R16 R16 . KA 8 R16 D 1 1304 1834 R16 R16 . LA 9 CLR D 1 1305 1835 CLR CLR . MA 8 R16 D 1 1306 1836 R16 R16 . NA 8 R16 D 1 1307 1837 R16 R16 . OA 8 R16 D 1 1308 1839 R16 R16 . PA 8 R16 D 1 1309 1840 R16 R16 . QA 8 R16 D 1 1310 1841 R16 R16 . RA 7 PEE D 1 1311 1844 PEE PEE . SA 7 PEE D 1 1312 1845 PEE PEE . TA 8 R16 D 1 1313 1846 R16 R16 . UA 7 PEE D 1 1314 1847 PEE PEE . VA 6 TWT D 1 1315 1848 TWT TWT . WA 10 NAG D 1 1316 1849 NAG NAG . XA 7 PEE D 1 1317 205 PEE PEE . YA 8 R16 D 1 1318 206 R16 R16 . ZA 11 CA E 1 301 301 CA CA . AB 11 CA E 1 302 302 CA CA . BB 6 TWT F 1 201 1830 TWT TWT . CB 8 R16 F 1 202 201 R16 R16 . DB 8 R16 F 1 203 202 R16 R16 . EB 12 PLM F 1 204 203 PLM PLM . FB 12 PLM F 1 205 204 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 R16 . . . Y 8 232.735 195.575 177.867 1 120.46 ? C31 R16 1317 A 1 HETATM 2 C C32 R16 . . . Y 8 231.83 196.051 178.999 1 120.46 ? C32 R16 1317 A 1 HETATM 3 C C33 R16 . . . Y 8 232.616 196.869 180.016 1 120.46 ? C33 R16 1317 A 1 HETATM 4 C C34 R16 . . . Y 8 231.715 197.354 181.146 1 120.46 ? C34 R16 1317 A 1 HETATM 5 C C35 R16 . . . Y 8 232.503 198.193 182.144 1 120.46 ? C35 R16 1317 A 1 HETATM 6 C C36 R16 . . . Y 8 231.597 198.751 183.235 1 120.46 ? C36 R16 1317 A 1 HETATM 7 C C37 R16 . . . Y 8 231.003 197.637 184.089 1 120.46 ? C37 R16 1317 A 1 HETATM 8 C C38 R16 . . . Y 8 230.153 198.217 185.214 1 120.46 ? C38 R16 1317 A 1 HETATM 9 C C39 R16 . . . Y 8 229.588 197.115 186.102 1 120.46 ? C39 R16 1317 A 1 HETATM 10 C C40 R16 . . . Y 8 228.742 197.703 187.225 1 120.46 ? C40 R16 1317 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #