data_8TL9
#
_model_server_result.job_id            rpWtN5efSckLio_tm2rwIQ 
_model_server_result.datetime_utc      '2024-10-19 03:54:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":3002}' 
#
_entry.id    8TL9 
#
_exptl.entry_id    8TL9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              420.096 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TL9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 N N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE2 GLU 1882 A GLU 1882 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
metalc ? metalc2 A OE1 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc3 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? 
metalc ? metalc4 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc5 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc7 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc8 A O THR 2581 A THR 2581 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc9 B OE1 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? 
metalc ? metalc10 B OE2 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? 
metalc ? metalc11 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc12 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc13 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc14 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc15 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc16 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc17 C OE2 GLU 1882 C GLU 1882 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc18 C OE1 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
metalc ? metalc19 C OE2 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc20 C SG CYS 2538 C CYS 2538 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc21 C SG CYS 2541 C CYS 2541 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc22 C NE2 HIS 2558 C HIS 2558 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc23 C ND1 HIS 2563 C HIS 2563 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc24 C O THR 2581 C THR 2581 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc25 D OE1 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? 
metalc ? metalc26 D OE2 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc27 D SG CYS 2538 D CYS 2538 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc28 D SG CYS 2541 D CYS 2541 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc29 D NE2 HIS 2558 D HIS 2558 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc30 D ND1 HIS 2563 D HIS 2563 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc31 D O THR 2581 D THR 2581 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
#
_chem_comp.formula           'C6 H15 O15 P3' 
_chem_comp.formula_weight    420.096 
_chem_comp.id                I3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 I3P sing 199 n n 
C1 C6 I3P sing 200 n n 
C1 O1 I3P sing 201 n n 
C1 H1 I3P sing 202 n n 
C2 C3 I3P sing 203 n n 
C2 O2 I3P sing 204 n n 
C2 H2 I3P sing 205 n n 
C3 C4 I3P sing 206 n n 
C3 O3 I3P sing 207 n n 
C3 H3 I3P sing 208 n n 
C4 C5 I3P sing 209 n n 
C4 O4 I3P sing 210 n n 
C4 H4 I3P sing 211 n n 
C5 C6 I3P sing 212 n n 
C5 O5 I3P sing 213 n n 
C5 H5 I3P sing 214 n n 
C6 O6 I3P sing 215 n n 
C6 H6 I3P sing 216 n n 
O1 P1 I3P sing 217 n n 
O2 HO2 I3P sing 218 n n 
O3 HO3 I3P sing 219 n n 
O4 P4 I3P sing 220 n n 
O5 P5 I3P sing 221 n n 
O6 HO6 I3P sing 222 n n 
P1 O11 I3P doub 223 n n 
P1 O12 I3P sing 224 n n 
P1 O13 I3P sing 225 n n 
O12 HO12 I3P sing 226 n n 
O13 HO13 I3P sing 227 n n 
P4 O41 I3P doub 228 n n 
P4 O42 I3P sing 229 n n 
P4 O43 I3P sing 230 n n 
O42 HO42 I3P sing 231 n n 
O43 HO43 I3P sing 232 n n 
P5 O51 I3P doub 233 n n 
P5 O52 I3P sing 234 n n 
P5 O53 I3P sing 235 n n 
O52 HO52 I3P sing 236 n n 
O53 HO53 I3P sing 237 n n 
#
_atom_sites.entry_id                     8TL9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 4 CA A 1 3003 3003 CA CA . 
H 5 ATP A 1 3004 3005 ATP ATP . 
I 2 ZN B 1 3001 3001 ZN ZN . 
J 3 I3P B 1 3002 3002 I3P I3P . 
K 4 CA B 1 3003 3003 CA CA . 
L 5 ATP B 1 3004 3005 ATP ATP . 
M 2 ZN C 1 3001 3001 ZN ZN . 
N 3 I3P C 1 3002 3002 I3P I3P . 
O 4 CA C 1 3003 3003 CA CA . 
P 5 ATP C 1 3004 3005 ATP ATP . 
Q 2 ZN D 1 3001 3001 ZN ZN . 
R 3 I3P D 1 3002 3002 I3P I3P . 
S 4 CA D 1 3003 3003 CA CA . 
T 5 ATP D 1 3004 3005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I3P . . . N 3 161.24 154.346 177.039 1 203.85 ? C1 I3P 3002 C 1 
HETATM 2 C C2 I3P . . . N 3 160.939 155.524 176.134 1 203.83 ? C2 I3P 3002 C 1 
HETATM 3 C C3 I3P . . . N 3 161.117 155.155 174.663 1 203.99 ? C3 I3P 3002 C 1 
HETATM 4 C C4 I3P . . . N 3 162.568 154.822 174.319 1 204.52 ? C4 I3P 3002 C 1 
HETATM 5 C C5 I3P . . . N 3 163.259 154.141 175.515 1 204.21 ? C5 I3P 3002 C 1 
HETATM 6 C C6 I3P . . . N 3 162.273 153.395 176.426 1 203.57 ? C6 I3P 3002 C 1 
HETATM 7 O O1 I3P . . . N 3 160.03 153.682 177.318 1 204.02 ? O1 I3P 3002 C 1 
HETATM 8 O O2 I3P . . . N 3 159.628 155.986 176.381 1 202.62 ? O2 I3P 3002 C 1 
HETATM 9 O O3 I3P . . . N 3 160.302 154.041 174.35 1 203.56 ? O3 I3P 3002 C 1 
HETATM 10 O O4 I3P . . . N 3 163.256 155.989 173.995 1 204.87 ? O4 I3P 3002 C 1 
HETATM 11 O O5 I3P . . . N 3 164.216 153.249 175.033 1 204.36 ? O5 I3P 3002 C 1 
HETATM 12 O O6 I3P . . . N 3 163 152.713 177.412 1 202.61 ? O6 I3P 3002 C 1 
HETATM 13 P P1 I3P . . . N 3 159.914 152.742 178.719 1 204.64 ? P1 I3P 3002 C 1 
HETATM 14 O O11 I3P . . . N 3 158.48 152.236 178.775 1 203.5 ? O11 I3P 3002 C 1 
HETATM 15 O O12 I3P . . . N 3 160.981 151.69 178.477 1 202.92 ? O12 I3P 3002 C 1 
HETATM 16 O O13 I3P . . . N 3 160.25 153.739 179.85 1 203.59 ? O13 I3P 3002 C 1 
HETATM 17 P P4 I3P . . . N 3 163.472 156.534 172.402 1 204.73 ? P4 I3P 3002 C 1 
HETATM 18 O O41 I3P . . . N 3 164.062 155.344 171.645 1 203.38 ? O41 I3P 3002 C 1 
HETATM 19 O O42 I3P . . . N 3 162.046 156.857 171.971 1 203.7 ? O42 I3P 3002 C 1 
HETATM 20 O O43 I3P . . . N 3 164.407 157.74 172.481 1 204.53 ? O43 I3P 3002 C 1 
HETATM 21 P P5 I3P . . . N 3 165.813 153.684 174.666 1 204.59 ? P5 I3P 3002 C 1 
HETATM 22 O O51 I3P . . . N 3 165.778 155.151 174.238 1 203.65 ? O51 I3P 3002 C 1 
HETATM 23 O O52 I3P . . . N 3 166.253 152.734 173.552 1 204.38 ? O52 I3P 3002 C 1 
HETATM 24 O O53 I3P . . . N 3 166.53 153.413 175.985 1 203 ? O53 I3P 3002 C 1 
HETATM 25 H H1 I3P . . . N 3 161.623 154.72 177.848 1 203.04 ? H1 I3P 3002 C 1 
HETATM 26 H H2 I3P . . . N 3 161.578 156.221 176.348 1 203.21 ? H2 I3P 3002 C 1 
HETATM 27 H H3 I3P . . . N 3 160.851 155.924 174.135 1 203.17 ? H3 I3P 3002 C 1 
HETATM 28 H H4 I3P . . . N 3 162.574 154.206 173.57 1 203.24 ? H4 I3P 3002 C 1 
HETATM 29 H H5 I3P . . . N 3 163.68 154.834 176.045 1 203.21 ? H5 I3P 3002 C 1 
HETATM 30 H H6 I3P . . . N 3 161.787 152.762 175.876 1 202.99 ? H6 I3P 3002 C 1 
HETATM 31 H HO2 I3P . . . N 3 159.169 155.305 176.6 1 202.71 ? HO2 I3P 3002 C 1 
HETATM 32 H HO3 I3P . . . N 3 160.285 153.96 173.505 1 203.02 ? HO3 I3P 3002 C 1 
HETATM 33 H HO6 I3P . . . N 3 162.659 151.947 177.554 1 202.93 ? HO6 I3P 3002 C 1 
#
_model_server_stats.io_time_ms              149 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    403 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#