data_8TL9
#
_model_server_result.job_id            grYiCG_9W7XitmWf6oRK5w 
_model_server_result.datetime_utc      '2024-10-19 03:39:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3004}' 
#
_entry.id    8TL9 
#
_exptl.entry_id    8TL9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TL9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
? 5 P N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE2 GLU 1882 A GLU 1882 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
metalc ? metalc2 A OE1 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc3 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? 
metalc ? metalc4 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc5 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc7 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc8 A O THR 2581 A THR 2581 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc9 B OE1 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? 
metalc ? metalc10 B OE2 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? 
metalc ? metalc11 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc12 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc13 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc14 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc15 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc16 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc17 C OE2 GLU 1882 C GLU 1882 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc18 C OE1 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
metalc ? metalc19 C OE2 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc20 C SG CYS 2538 C CYS 2538 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc21 C SG CYS 2541 C CYS 2541 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc22 C NE2 HIS 2558 C HIS 2558 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc23 C ND1 HIS 2563 C HIS 2563 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc24 C O THR 2581 C THR 2581 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc25 D OE1 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? 
metalc ? metalc26 D OE2 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc27 D SG CYS 2538 D CYS 2538 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc28 D SG CYS 2541 D CYS 2541 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc29 D NE2 HIS 2558 D HIS 2558 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc30 D ND1 HIS 2563 D HIS 2563 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc31 D O THR 2581 D THR 2581 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8TL9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 4 CA A 1 3003 3003 CA CA . 
H 5 ATP A 1 3004 3005 ATP ATP . 
I 2 ZN B 1 3001 3001 ZN ZN . 
J 3 I3P B 1 3002 3002 I3P I3P . 
K 4 CA B 1 3003 3003 CA CA . 
L 5 ATP B 1 3004 3005 ATP ATP . 
M 2 ZN C 1 3001 3001 ZN ZN . 
N 3 I3P C 1 3002 3002 I3P I3P . 
O 4 CA C 1 3003 3003 CA CA . 
P 5 ATP C 1 3004 3005 ATP ATP . 
Q 2 ZN D 1 3001 3001 ZN ZN . 
R 3 I3P D 1 3002 3002 I3P I3P . 
S 4 CA D 1 3003 3003 CA CA . 
T 5 ATP D 1 3004 3005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 5 245.437 208.524 234.307 1 115.55 ? PG ATP 3004 A 1 
HETATM 2 O O1G ATP . . . H 5 246.666 208.288 235.118 1 108.46 ? O1G ATP 3004 A 1 
HETATM 3 O O2G ATP . . . H 5 245.629 209.547 233.182 1 101.83 ? O2G ATP 3004 A 1 
HETATM 4 O O3G ATP . . . H 5 244.831 207.243 233.722 1 100.28 ? O3G ATP 3004 A 1 
HETATM 5 P PB ATP . . . H 5 243.152 208.667 236.241 1 117.51 ? PB ATP 3004 A 1 
HETATM 6 O O1B ATP . . . H 5 243.547 208.916 237.642 1 103.73 ? O1B ATP 3004 A 1 
HETATM 7 O O2B ATP . . . H 5 242.803 207.22 235.896 1 101.46 ? O2B ATP 3004 A 1 
HETATM 8 O O3B ATP . . . H 5 244.274 209.14 235.216 1 105.89 ? O3B ATP 3004 A 1 
HETATM 9 P PA ATP . . . H 5 241.637 211.112 235.54 1 99.81 ? PA ATP 3004 A 1 
HETATM 10 O O1A ATP . . . H 5 241.908 211.475 234.134 1 97.36 ? O1A ATP 3004 A 1 
HETATM 11 O O2A ATP . . . H 5 242.449 211.898 236.569 1 96.97 ? O2A ATP 3004 A 1 
HETATM 12 O O3A ATP . . . H 5 241.913 209.568 235.809 1 107.97 ? O3A ATP 3004 A 1 
HETATM 13 O O5' ATP . . . H 5 240.106 211.262 235.897 1 101.92 ? O5' ATP 3004 A 1 
HETATM 14 C C5' ATP . . . H 5 239.683 211.776 237.177 1 101 ? C5' ATP 3004 A 1 
HETATM 15 C C4' ATP . . . H 5 238.341 211.197 237.545 1 100.84 ? C4' ATP 3004 A 1 
HETATM 16 O O4' ATP . . . H 5 237.341 212.14 237.094 1 98.18 ? O4' ATP 3004 A 1 
HETATM 17 C C3' ATP . . . H 5 238.056 209.918 236.757 1 103.18 ? C3' ATP 3004 A 1 
HETATM 18 O O3' ATP . . . H 5 237.079 209.213 237.51 1 101.11 ? O3' ATP 3004 A 1 
HETATM 19 C C2' ATP . . . H 5 237.326 210.446 235.526 1 103.13 ? C2' ATP 3004 A 1 
HETATM 20 O O2' ATP . . . H 5 236.407 209.433 235.139 1 105.31 ? O2' ATP 3004 A 1 
HETATM 21 C C1' ATP . . . H 5 236.464 211.513 236.185 1 100.16 ? C1' ATP 3004 A 1 
HETATM 22 N N9 ATP . . . H 5 236.042 212.53 235.23 1 95.81 ? N9 ATP 3004 A 1 
HETATM 23 C C8 ATP . . . H 5 236.837 213.408 234.542 1 96.84 ? C8 ATP 3004 A 1 
HETATM 24 N N7 ATP . . . H 5 236.18 214.213 233.743 1 94.38 ? N7 ATP 3004 A 1 
HETATM 25 C C5 ATP . . . H 5 234.856 213.839 233.917 1 87.95 ? C5 ATP 3004 A 1 
HETATM 26 C C6 ATP . . . H 5 233.653 214.307 233.354 1 88.02 ? C6 ATP 3004 A 1 
HETATM 27 N N6 ATP . . . H 5 233.586 215.299 232.46 1 91.83 ? N6 ATP 3004 A 1 
HETATM 28 N N1 ATP . . . H 5 232.504 213.713 233.744 1 94.48 ? N1 ATP 3004 A 1 
HETATM 29 C C2 ATP . . . H 5 232.563 212.721 234.636 1 99.15 ? C2 ATP 3004 A 1 
HETATM 30 N N3 ATP . . . H 5 233.634 212.196 235.233 1 102.98 ? N3 ATP 3004 A 1 
HETATM 31 C C4 ATP . . . H 5 234.756 212.801 234.83 1 94.47 ? C4 ATP 3004 A 1 
HETATM 32 H "H5'1" ATP . . . H 5 239.615 212.742 237.132 1 98 ? "H5'1" ATP 3004 A 1 
HETATM 33 H "H5'2" ATP . . . H 5 240.333 211.53 237.853 1 99.55 ? "H5'2" ATP 3004 A 1 
HETATM 34 H H4' ATP . . . H 5 238.285 211.038 238.5 1 99.31 ? H4' ATP 3004 A 1 
HETATM 35 H H3' ATP . . . H 5 238.843 209.388 236.556 1 99.91 ? H3' ATP 3004 A 1 
HETATM 36 H HO3' ATP . . . H 5 237.059 208.419 237.206 1 99.67 ? HO3' ATP 3004 A 1 
HETATM 37 H H2' ATP . . . H 5 237.9 210.761 234.81 1 99.33 ? H2' ATP 3004 A 1 
HETATM 38 H HO2' ATP . . . H 5 235.943 209.244 235.825 1 100.06 ? HO2' ATP 3004 A 1 
HETATM 39 H H1' ATP . . . H 5 235.698 211.123 236.634 1 99.04 ? H1' ATP 3004 A 1 
HETATM 40 H H8 ATP . . . H 5 237.763 213.431 234.633 1 97.57 ? H8 ATP 3004 A 1 
HETATM 41 H HN61 ATP . . . H 5 234.302 215.705 232.212 1 95.53 ? HN61 ATP 3004 A 1 
HETATM 42 H HN62 ATP . . . H 5 232.825 215.531 232.133 1 95.86 ? HN62 ATP 3004 A 1 
HETATM 43 H H2 ATP . . . H 5 231.746 212.344 234.872 1 97.6 ? H2 ATP 3004 A 1 
#
_model_server_stats.io_time_ms              144 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    148 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#