data_8TL9
#
_model_server_result.job_id            ZLP3LYl-xjljkct3fPGHxA 
_model_server_result.datetime_utc      '2024-10-19 03:59:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tl9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":3004}' 
#
_entry.id    8TL9 
#
_exptl.entry_id    8TL9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TL9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
? 5 P N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OE2 GLU 1882 A GLU 1882 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
metalc ? metalc2 A OE1 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc3 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? 
metalc ? metalc4 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc5 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc6 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc7 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc8 A O THR 2581 A THR 2581 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc9 B OE1 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? 
metalc ? metalc10 B OE2 GLU 1882 B GLU 1882 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? 
metalc ? metalc11 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc12 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc13 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc14 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc15 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc16 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc17 C OE2 GLU 1882 C GLU 1882 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc18 C OE1 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? 
metalc ? metalc19 C OE2 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc20 C SG CYS 2538 C CYS 2538 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc21 C SG CYS 2541 C CYS 2541 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc22 C NE2 HIS 2558 C HIS 2558 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc23 C ND1 HIS 2563 C HIS 2563 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc24 C O THR 2581 C THR 2581 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc25 D OE1 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? 
metalc ? metalc26 D OE2 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc27 D SG CYS 2538 D CYS 2538 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc28 D SG CYS 2541 D CYS 2541 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc29 D NE2 HIS 2558 D HIS 2558 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc30 D ND1 HIS 2563 D HIS 2563 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc31 D O THR 2581 D THR 2581 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8TL9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 4 CA A 1 3003 3003 CA CA . 
H 5 ATP A 1 3004 3005 ATP ATP . 
I 2 ZN B 1 3001 3001 ZN ZN . 
J 3 I3P B 1 3002 3002 I3P I3P . 
K 4 CA B 1 3003 3003 CA CA . 
L 5 ATP B 1 3004 3005 ATP ATP . 
M 2 ZN C 1 3001 3001 ZN ZN . 
N 3 I3P C 1 3002 3002 I3P I3P . 
O 4 CA C 1 3003 3003 CA CA . 
P 5 ATP C 1 3004 3005 ATP ATP . 
Q 2 ZN D 1 3001 3001 ZN ZN . 
R 3 I3P D 1 3002 3002 I3P I3P . 
S 4 CA D 1 3003 3003 CA CA . 
T 5 ATP D 1 3004 3005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 5 176.511 212.932 234.353 1 110.17 ? PG ATP 3004 C 1 
HETATM 2 O O1G ATP . . . P 5 175.286 212.788 235.191 1 107.24 ? O1G ATP 3004 C 1 
HETATM 3 O O2G ATP . . . P 5 176.374 212.323 232.953 1 103.64 ? O2G ATP 3004 C 1 
HETATM 4 O O3G ATP . . . P 5 177.001 214.379 234.224 1 100.43 ? O3G ATP 3004 C 1 
HETATM 5 P PB ATP . . . P 5 178.955 212.411 236.006 1 116.67 ? PB ATP 3004 C 1 
HETATM 6 O O1B ATP . . . P 5 178.665 211.924 237.37 1 104.94 ? O1B ATP 3004 C 1 
HETATM 7 O O2B ATP . . . P 5 179.325 213.889 235.891 1 103.84 ? O2B ATP 3004 C 1 
HETATM 8 O O3B ATP . . . P 5 177.739 212.15 235.014 1 104.37 ? O3B ATP 3004 C 1 
HETATM 9 P PA ATP . . . P 5 180.332 210.092 234.785 1 104.24 ? PA ATP 3004 C 1 
HETATM 10 O O1A ATP . . . P 5 180.242 210.025 233.312 1 98.99 ? O1A ATP 3004 C 1 
HETATM 11 O O2A ATP . . . P 5 179.335 209.204 235.529 1 100.82 ? O2A ATP 3004 C 1 
HETATM 12 O O3A ATP . . . P 5 180.123 211.577 235.318 1 107.94 ? O3A ATP 3004 C 1 
HETATM 13 O O5' ATP . . . P 5 181.785 209.744 235.297 1 104.55 ? O5' ATP 3004 C 1 
HETATM 14 C C5' ATP . . . P 5 182.013 209.282 236.644 1 102.8 ? C5' ATP 3004 C 1 
HETATM 15 C C4' ATP . . . P 5 183.301 209.859 237.169 1 101.03 ? C4' ATP 3004 C 1 
HETATM 16 O O4' ATP . . . P 5 184.36 208.966 236.752 1 100.86 ? O4' ATP 3004 C 1 
HETATM 17 C C3' ATP . . . P 5 183.624 211.191 236.493 1 102.14 ? C3' ATP 3004 C 1 
HETATM 18 O O3' ATP . . . P 5 184.523 211.86 237.368 1 104.26 ? O3' ATP 3004 C 1 
HETATM 19 C C2' ATP . . . P 5 184.461 210.757 235.293 1 102.15 ? C2' ATP 3004 C 1 
HETATM 20 O O2' ATP . . . P 5 185.392 211.805 235.058 1 103.25 ? O2' ATP 3004 C 1 
HETATM 21 C C1' ATP . . . P 5 185.286 209.655 235.941 1 101.74 ? C1' ATP 3004 C 1 
HETATM 22 N N9 ATP . . . P 5 185.775 208.701 234.954 1 97.83 ? N9 ATP 3004 C 1 
HETATM 23 C C8 ATP . . . P 5 185.028 207.888 234.142 1 97.73 ? C8 ATP 3004 C 1 
HETATM 24 N N7 ATP . . . P 5 185.739 207.128 233.345 1 94.77 ? N7 ATP 3004 C 1 
HETATM 25 C C5 ATP . . . P 5 187.048 207.464 233.654 1 91.54 ? C5 ATP 3004 C 1 
HETATM 26 C C6 ATP . . . P 5 188.287 207.013 233.16 1 92.27 ? C6 ATP 3004 C 1 
HETATM 27 N N6 ATP . . . P 5 188.415 206.085 232.206 1 92.64 ? N6 ATP 3004 C 1 
HETATM 28 N N1 ATP . . . P 5 189.408 207.555 233.685 1 96.95 ? N1 ATP 3004 C 1 
HETATM 29 C C2 ATP . . . P 5 189.289 208.483 234.638 1 99.8 ? C2 ATP 3004 C 1 
HETATM 30 N N3 ATP . . . P 5 188.178 208.985 235.181 1 100.85 ? N3 ATP 3004 C 1 
HETATM 31 C C4 ATP . . . P 5 187.086 208.432 234.644 1 96.06 ? C4 ATP 3004 C 1 
HETATM 32 H "H5'1" ATP . . . P 5 182.068 208.314 236.649 1 99.84 ? "H5'1" ATP 3004 C 1 
HETATM 33 H "H5'2" ATP . . . P 5 181.279 209.566 237.211 1 101.12 ? "H5'2" ATP 3004 C 1 
HETATM 34 H H4' ATP . . . P 5 183.268 209.956 238.134 1 100.79 ? H4' ATP 3004 C 1 
HETATM 35 H H3' ATP . . . P 5 182.844 211.719 236.262 1 100.92 ? H3' ATP 3004 C 1 
HETATM 36 H HO3' ATP . . . P 5 184.498 212.685 237.162 1 101.21 ? HO3' ATP 3004 C 1 
HETATM 37 H H2' ATP . . . P 5 183.953 210.49 234.511 1 100.65 ? H2' ATP 3004 C 1 
HETATM 38 H HO2' ATP . . . P 5 185.75 211.99 235.806 1 101.21 ? HO2' ATP 3004 C 1 
HETATM 39 H H1' ATP . . . P 5 186.019 210.021 236.46 1 100.89 ? H1' ATP 3004 C 1 
HETATM 40 H H8 ATP . . . P 5 184.098 207.877 234.155 1 99.68 ? H8 ATP 3004 C 1 
HETATM 41 H HN61 ATP . . . P 5 187.717 205.707 231.876 1 96.68 ? HN61 ATP 3004 C 1 
HETATM 42 H HN62 ATP . . . P 5 189.197 205.865 231.923 1 97.52 ? HN62 ATP 3004 C 1 
HETATM 43 H H2 ATP . . . P 5 190.088 208.825 234.967 1 99.62 ? H2 ATP 3004 C 1 
#
_model_server_stats.io_time_ms              152 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    412 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#