data_8TLA
#
_model_server_result.job_id            kgs3E3Ckb5jldyMoa_YAwQ 
_model_server_result.datetime_utc      '2024-10-15 11:29:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tla 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3002}' 
#
_entry.id    8TLA 
#
_exptl.entry_id    8TLA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              420.096 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TLA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TLA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
? 3 N N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OE1 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc2 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc3 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc4 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc5 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc6 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc7 A O THR 2581 A THR 2581 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc8 B OE1 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc9 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? 
metalc ? metalc10 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc11 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc12 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc13 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc14 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc15 C OE2 GLU 1882 C GLU 1882 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc16 C OE1 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc17 C SG CYS 2538 C CYS 2538 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc18 C SG CYS 2541 C CYS 2541 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc19 C NE2 HIS 2558 C HIS 2558 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc20 C ND1 HIS 2563 C HIS 2563 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc21 C O THR 2581 C THR 2581 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc22 D OE1 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc23 D OE2 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc24 D SG CYS 2538 D CYS 2538 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc25 D SG CYS 2541 D CYS 2541 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc26 D NE2 HIS 2558 D HIS 2558 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc27 D ND1 HIS 2563 D HIS 2563 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc28 D O THR 2581 D THR 2581 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
#
_chem_comp.formula           'C6 H15 O15 P3' 
_chem_comp.formula_weight    420.096 
_chem_comp.id                I3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 I3P sing 199 n n 
C1 C6 I3P sing 200 n n 
C1 O1 I3P sing 201 n n 
C1 H1 I3P sing 202 n n 
C2 C3 I3P sing 203 n n 
C2 O2 I3P sing 204 n n 
C2 H2 I3P sing 205 n n 
C3 C4 I3P sing 206 n n 
C3 O3 I3P sing 207 n n 
C3 H3 I3P sing 208 n n 
C4 C5 I3P sing 209 n n 
C4 O4 I3P sing 210 n n 
C4 H4 I3P sing 211 n n 
C5 C6 I3P sing 212 n n 
C5 O5 I3P sing 213 n n 
C5 H5 I3P sing 214 n n 
C6 O6 I3P sing 215 n n 
C6 H6 I3P sing 216 n n 
O1 P1 I3P sing 217 n n 
O2 HO2 I3P sing 218 n n 
O3 HO3 I3P sing 219 n n 
O4 P4 I3P sing 220 n n 
O5 P5 I3P sing 221 n n 
O6 HO6 I3P sing 222 n n 
P1 O11 I3P doub 223 n n 
P1 O12 I3P sing 224 n n 
P1 O13 I3P sing 225 n n 
O12 HO12 I3P sing 226 n n 
O13 HO13 I3P sing 227 n n 
P4 O41 I3P doub 228 n n 
P4 O42 I3P sing 229 n n 
P4 O43 I3P sing 230 n n 
O42 HO42 I3P sing 231 n n 
O43 HO43 I3P sing 232 n n 
P5 O51 I3P doub 233 n n 
P5 O52 I3P sing 234 n n 
P5 O53 I3P sing 235 n n 
O52 HO52 I3P sing 236 n n 
O53 HO53 I3P sing 237 n n 
#
_atom_sites.entry_id                     8TLA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 4 CA A 1 3003 3003 CA CA . 
H 5 ATP A 1 3004 3005 ATP ATP . 
I 2 ZN B 1 3001 3001 ZN ZN . 
J 3 I3P B 1 3002 3002 I3P I3P . 
K 4 CA B 1 3003 3003 CA CA . 
L 5 ATP B 1 3004 3005 ATP ATP . 
M 2 ZN C 1 3001 3001 ZN ZN . 
N 3 I3P C 1 3002 3002 I3P I3P . 
O 4 CA C 1 3003 3003 CA CA . 
P 5 ATP C 1 3004 3005 ATP ATP . 
Q 2 ZN D 1 3001 3001 ZN ZN . 
R 3 I3P D 1 3002 3002 I3P I3P . 
S 4 CA D 1 3003 3003 CA CA . 
T 5 ATP D 1 3004 3005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 I3P . . . J 3 154.021 258.903 178.385 1 284.18 ? C1 I3P 3002 B 1 
HETATM 2 C C2 I3P . . . J 3 155.217 259.229 177.512 1 283.86 ? C2 I3P 3002 B 1 
HETATM 3 C C3 I3P . . . J 3 154.871 259.067 176.036 1 284.23 ? C3 I3P 3002 B 1 
HETATM 4 C C4 I3P . . . J 3 154.598 257.609 175.67 1 284.31 ? C4 I3P 3002 B 1 
HETATM 5 C C5 I3P . . . J 3 153.937 256.876 176.851 1 284.17 ? C5 I3P 3002 B 1 
HETATM 6 C C6 I3P . . . J 3 153.136 257.815 177.767 1 284.39 ? C6 I3P 3002 B 1 
HETATM 7 O O1 I3P . . . J 3 153.299 260.092 178.602 1 284.21 ? O1 I3P 3002 B 1 
HETATM 8 O O2 I3P . . . J 3 155.66 260.542 177.787 1 283.37 ? O2 I3P 3002 B 1 
HETATM 9 O O3 I3P . . . J 3 153.729 259.843 175.728 1 283.94 ? O3 I3P 3002 B 1 
HETATM 10 O O4 I3P . . . J 3 155.795 256.976 175.344 1 284.3 ? O4 I3P 3002 B 1 
HETATM 11 O O5 I3P . . . J 3 153.091 255.888 176.349 1 283.8 ? O5 I3P 3002 B 1 
HETATM 12 O O6 I3P . . . J 3 152.502 257.044 178.752 1 284.38 ? O6 I3P 3002 B 1 
HETATM 13 P P1 I3P . . . J 3 152.276 260.203 179.944 1 285.01 ? P1 I3P 3002 B 1 
HETATM 14 O O11 I3P . . . J 3 151.729 261.622 179.947 1 283.94 ? O11 I3P 3002 B 1 
HETATM 15 O O12 I3P . . . J 3 151.27 259.103 179.66 1 284.7 ? O12 I3P 3002 B 1 
HETATM 16 O O13 I3P . . . J 3 153.215 259.912 181.136 1 284.11 ? O13 I3P 3002 B 1 
HETATM 17 P P4 I3P . . . J 3 156.32 256.748 173.746 1 284.72 ? P4 I3P 3002 B 1 
HETATM 18 O O41 I3P . . . J 3 155.078 256.305 172.974 1 284.12 ? O41 I3P 3002 B 1 
HETATM 19 O O42 I3P . . . J 3 156.788 258.146 173.355 1 284.07 ? O42 I3P 3002 B 1 
HETATM 20 O O43 I3P . . . J 3 157.423 255.693 173.799 1 283.49 ? O43 I3P 3002 B 1 
HETATM 21 P P5 I3P . . . J 3 153.594 254.319 175.95 1 283.56 ? P5 I3P 3002 B 1 
HETATM 22 O O51 I3P . . . J 3 155.067 254.42 175.554 1 283.91 ? O51 I3P 3002 B 1 
HETATM 23 O O52 I3P . . . J 3 152.685 253.873 174.804 1 283.46 ? O52 I3P 3002 B 1 
HETATM 24 O O53 I3P . . . J 3 153.324 253.558 177.244 1 283.05 ? O53 I3P 3002 B 1 
HETATM 25 H H1 I3P . . . J 3 154.38 258.56 179.218 1 283.65 ? H1 I3P 3002 B 1 
HETATM 26 H H2 I3P . . . J 3 155.917 258.593 177.729 1 283.5 ? H2 I3P 3002 B 1 
HETATM 27 H H3 I3P . . . J 3 155.635 259.37 175.521 1 283.68 ? H3 I3P 3002 B 1 
HETATM 28 H H4 I3P . . . J 3 153.989 257.589 174.916 1 283.59 ? H4 I3P 3002 B 1 
HETATM 29 H H5 I3P . . . J 3 154.642 256.48 177.385 1 283.57 ? H5 I3P 3002 B 1 
HETATM 30 H H6 I3P . . . J 3 152.473 258.26 177.218 1 283.59 ? H6 I3P 3002 B 1 
HETATM 31 H HO2 I3P . . . J 3 154.966 261.032 177.809 1 283.63 ? HO2 I3P 3002 B 1 
HETATM 32 H HO3 I3P . . . J 3 153.9 260.293 175.028 1 283.47 ? HO3 I3P 3002 B 1 
HETATM 33 H HO6 I3P . . . J 3 151.684 257.267 178.821 1 283.7 ? HO6 I3P 3002 B 1 
#
_model_server_stats.io_time_ms              373 
_model_server_stats.parse_time_ms           60 
_model_server_stats.create_model_time_ms    144 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           33 
#