data_8TLA
#
_model_server_result.job_id            qQkebM28s6Qq_sddHW4m4w 
_model_server_result.datetime_utc      '2024-10-15 11:19:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tla 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3004}' 
#
_entry.id    8TLA 
#
_exptl.entry_id    8TLA 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TLA 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TLA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
? 5 P N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2455 A CYS 2455 1_555 A SG CYS 2461 A CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 2455 B CYS 2455 1_555 B SG CYS 2461 B CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 2455 C CYS 2455 1_555 C SG CYS 2461 C CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 2455 D CYS 2455 1_555 D SG CYS 2461 D CYS 2461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OE1 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc2 A OE2 GLU 1946 A GLU 1946 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc3 A SG CYS 2538 A CYS 2538 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc4 A SG CYS 2541 A CYS 2541 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc5 A NE2 HIS 2558 A HIS 2558 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc6 A ND1 HIS 2563 A HIS 2563 1_555 E ZN ZN . A ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc7 A O THR 2581 A THR 2581 1_555 G CA CA . A CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc8 B OE1 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc9 B OE2 GLU 1946 B GLU 1946 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? 
metalc ? metalc10 B SG CYS 2538 B CYS 2538 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc11 B SG CYS 2541 B CYS 2541 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc12 B NE2 HIS 2558 B HIS 2558 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc13 B ND1 HIS 2563 B HIS 2563 1_555 I ZN ZN . B ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc14 B O THR 2581 B THR 2581 1_555 K CA CA . B CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc15 C OE2 GLU 1882 C GLU 1882 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc16 C OE1 GLU 1946 C GLU 1946 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc17 C SG CYS 2538 C CYS 2538 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc18 C SG CYS 2541 C CYS 2541 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc19 C NE2 HIS 2558 C HIS 2558 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc20 C ND1 HIS 2563 C HIS 2563 1_555 M ZN ZN . C ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc21 C O THR 2581 C THR 2581 1_555 O CA CA . C CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc22 D OE1 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc23 D OE2 GLU 1946 D GLU 1946 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc24 D SG CYS 2538 D CYS 2538 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc25 D SG CYS 2541 D CYS 2541 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc26 D NE2 HIS 2558 D HIS 2558 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc27 D ND1 HIS 2563 D HIS 2563 1_555 Q ZN ZN . D ZN 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc28 D O THR 2581 D THR 2581 1_555 S CA CA . D CA 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8TLA 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 3001 3001 ZN ZN . 
F 3 I3P A 1 3002 3002 I3P I3P . 
G 4 CA A 1 3003 3003 CA CA . 
H 5 ATP A 1 3004 3005 ATP ATP . 
I 2 ZN B 1 3001 3001 ZN ZN . 
J 3 I3P B 1 3002 3002 I3P I3P . 
K 4 CA B 1 3003 3003 CA CA . 
L 5 ATP B 1 3004 3005 ATP ATP . 
M 2 ZN C 1 3001 3001 ZN ZN . 
N 3 I3P C 1 3002 3002 I3P I3P . 
O 4 CA C 1 3003 3003 CA CA . 
P 5 ATP C 1 3004 3005 ATP ATP . 
Q 2 ZN D 1 3001 3001 ZN ZN . 
R 3 I3P D 1 3002 3002 I3P I3P . 
S 4 CA D 1 3003 3003 CA CA . 
T 5 ATP D 1 3004 3005 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 5 245.213 210.492 237.915 1 111.22 ? PG ATP 3004 A 1 
HETATM 2 O O1G ATP . . . H 5 246.511 210.37 238.639 1 103.33 ? O1G ATP 3004 A 1 
HETATM 3 O O2G ATP . . . H 5 245.275 211.416 236.693 1 96.2 ? O2G ATP 3004 A 1 
HETATM 4 O O3G ATP . . . H 5 244.614 209.145 237.496 1 97.84 ? O3G ATP 3004 A 1 
HETATM 5 P PB ATP . . . H 5 243.026 210.723 239.95 1 114.93 ? PB ATP 3004 A 1 
HETATM 6 O O1B ATP . . . H 5 243.432 211.126 241.312 1 101.68 ? O1B ATP 3004 A 1 
HETATM 7 O O2B ATP . . . H 5 242.749 209.232 239.754 1 95.37 ? O2B ATP 3004 A 1 
HETATM 8 O O3B ATP . . . H 5 244.102 211.15 238.859 1 104.95 ? O3B ATP 3004 A 1 
HETATM 9 P PA ATP . . . H 5 241.374 213.003 239.036 1 97.1 ? PA ATP 3004 A 1 
HETATM 10 O O1A ATP . . . H 5 241.651 213.242 237.605 1 91.49 ? O1A ATP 3004 A 1 
HETATM 11 O O2A ATP . . . H 5 242.116 213.933 239.995 1 93.09 ? O2A ATP 3004 A 1 
HETATM 12 O O3A ATP . . . H 5 241.733 211.512 239.461 1 105.72 ? O3A ATP 3004 A 1 
HETATM 13 O O5' ATP . . . H 5 239.829 213.092 239.351 1 100.17 ? O5' ATP 3004 A 1 
HETATM 14 C C5' ATP . . . H 5 239.341 213.778 240.523 1 97.1 ? C5' ATP 3004 A 1 
HETATM 15 C C4' ATP . . . H 5 238.052 213.15 240.987 1 97.55 ? C4' ATP 3004 A 1 
HETATM 16 O O4' ATP . . . H 5 236.982 214.002 240.515 1 98.53 ? O4' ATP 3004 A 1 
HETATM 17 C C3' ATP . . . H 5 237.806 211.81 240.298 1 99.21 ? C3' ATP 3004 A 1 
HETATM 18 O O3' ATP . . . H 5 236.82 211.151 241.082 1 99.43 ? O3' ATP 3004 A 1 
HETATM 19 C C2' ATP . . . H 5 237.095 212.235 239.017 1 97.02 ? C2' ATP 3004 A 1 
HETATM 20 O O2' ATP . . . H 5 236.224 211.167 238.671 1 98.62 ? O2' ATP 3004 A 1 
HETATM 21 C C1' ATP . . . H 5 236.177 213.31 239.582 1 97.01 ? C1' ATP 3004 A 1 
HETATM 22 N N9 ATP . . . H 5 235.788 214.275 238.562 1 91.95 ? N9 ATP 3004 A 1 
HETATM 23 C C8 ATP . . . H 5 236.6 215.156 237.898 1 91.26 ? C8 ATP 3004 A 1 
HETATM 24 N N7 ATP . . . H 5 235.974 215.909 237.026 1 90.85 ? N7 ATP 3004 A 1 
HETATM 25 C C5 ATP . . . H 5 234.655 215.493 237.122 1 84.07 ? C5 ATP 3004 A 1 
HETATM 26 C C6 ATP . . . H 5 233.48 215.896 236.459 1 84.5 ? C6 ATP 3004 A 1 
HETATM 27 N N6 ATP . . . H 5 233.443 216.853 235.526 1 88.26 ? N6 ATP 3004 A 1 
HETATM 28 N N1 ATP . . . H 5 232.327 215.276 236.79 1 91.21 ? N1 ATP 3004 A 1 
HETATM 29 C C2 ATP . . . H 5 232.355 214.319 237.721 1 96.02 ? C2 ATP 3004 A 1 
HETATM 30 N N3 ATP . . . H 5 233.399 213.855 238.411 1 100.04 ? N3 ATP 3004 A 1 
HETATM 31 C C4 ATP . . . H 5 234.526 214.486 238.064 1 91.08 ? C4 ATP 3004 A 1 
HETATM 32 H "H5'1" ATP . . . H 5 239.185 214.711 240.309 1 95.07 ? "H5'1" ATP 3004 A 1 
HETATM 33 H "H5'2" ATP . . . H 5 240.001 213.715 241.232 1 96.08 ? "H5'2" ATP 3004 A 1 
HETATM 34 H H4' ATP . . . H 5 238.043 213.055 241.952 1 96.14 ? H4' ATP 3004 A 1 
HETATM 35 H H3' ATP . . . H 5 238.603 211.277 240.155 1 96.59 ? H3' ATP 3004 A 1 
HETATM 36 H HO3' ATP . . . H 5 236.843 210.329 240.865 1 96.63 ? HO3' ATP 3004 A 1 
HETATM 37 H H2' ATP . . . H 5 237.679 212.524 238.298 1 95.72 ? H2' ATP 3004 A 1 
HETATM 38 H HO2' ATP . . . H 5 235.769 210.983 239.364 1 96.49 ? HO2' ATP 3004 A 1 
HETATM 39 H H1' ATP . . . H 5 235.395 212.92 240.003 1 96.11 ? H1' ATP 3004 A 1 
HETATM 40 H H8 ATP . . . H 5 237.515 215.216 238.053 1 94.48 ? H8 ATP 3004 A 1 
HETATM 41 H HN61 ATP . . . H 5 234.16 217.28 235.318 1 92.59 ? HN61 ATP 3004 A 1 
HETATM 42 H HN62 ATP . . . H 5 232.702 217.042 235.132 1 92.39 ? HN62 ATP 3004 A 1 
HETATM 43 H H2 ATP . . . H 5 231.537 213.922 237.915 1 94.81 ? H2 ATP 3004 A 1 
#
_model_server_stats.io_time_ms              470 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    152 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           43 
#