data_8TLC # _model_server_result.job_id H2VP-Mo-HKqc-h3nrXzl0g _model_server_result.datetime_utc '2024-10-10 11:19:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8TLC # _exptl.entry_id 8TLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 731.682 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{4-[4-(2-amino-4-oxo-1,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-D-gamma-glutamyl-L-gamma-glutamyl-D-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TLC _cell.length_a 158.718 _cell.length_b 158.718 _cell.length_c 207.155 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.359 137.45382 -34.525833 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 268 A HIS 279 1_555 A N LLP 269 A LLP 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LLP 269 A LLP 280 1_555 A N THR 270 A THR 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C HIS 268 B HIS 279 1_555 B N LLP 269 B LLP 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C LLP 269 B LLP 280 1_555 B N THR 270 B THR 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C32 H38 F N7 O12' _chem_comp.formula_weight 731.682 _chem_comp.id I6I _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{4-[4-(2-amino-4-oxo-1,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-D-gamma-glutamyl-L-gamma-glutamyl-D-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C26 I6I doub 152 n n O42 C40 I6I doub 153 n n O18 C17 I6I doub 154 n n O41 C40 I6I sing 155 n n C40 C34 I6I sing 156 n n C26 C20 I6I sing 157 n n C26 O27 I6I sing 158 n n C17 N19 I6I sing 159 n n C17 C12 I6I sing 160 n n C20 N19 I6I sing 161 n n C20 C21 I6I sing 162 n n C34 N25 I6I sing 163 n n C34 C35 I6I sing 164 n n N03 C04 I6I sing 165 n n N03 C02 I6I doub 166 n n O10 C04 I6I doub 167 n n O24 C23 I6I doub 168 n n N11 C02 I6I sing 169 n n C12 C14 I6I doub 170 n y C12 C13 I6I sing 171 n y N25 C23 I6I sing 172 n n C23 C22 I6I sing 173 n n C21 C22 I6I sing 174 n n C14 C16 I6I sing 175 n y F24 C13 I6I sing 176 n n C13 C15 I6I doub 177 n y C04 C08 I6I sing 178 n n C02 N01 I6I sing 179 n n C16 C33 I6I doub 180 n y C45 C46 I6I sing 181 n n C45 C44 I6I sing 182 n n C15 C33 I6I sing 183 n y C35 C36 I6I sing 184 n n O47 C46 I6I doub 185 n n C36 C37 I6I sing 186 n n C33 C32 I6I sing 187 n n C46 O48 I6I sing 188 n n O51 C49 I6I doub 189 n n C32 C31 I6I sing 190 n n C08 C09 I6I doub 191 n y C08 N07 I6I sing 192 n y N01 C09 I6I sing 193 n n C43 C44 I6I sing 194 n n C43 C49 I6I sing 195 n n C43 N39 I6I sing 196 n n C31 C30 I6I sing 197 n n C49 O50 I6I sing 198 n n C29 N07 I6I sing 199 n n C29 C30 I6I sing 200 n n C09 C05 I6I sing 201 n y C37 N39 I6I sing 202 n n C37 O38 I6I doub 203 n n N07 C06 I6I sing 204 n y C05 C06 I6I doub 205 n y C05 H1 I6I sing 206 n n C06 H2 I6I sing 207 n n C14 H3 I6I sing 208 n n C15 H4 I6I sing 209 n n C16 H5 I6I sing 210 n n N19 H6 I6I sing 211 n n C20 H7 I6I sing 212 n n C21 H8 I6I sing 213 n n C21 H9 I6I sing 214 n n C29 H10 I6I sing 215 n n C29 H11 I6I sing 216 n n C30 H12 I6I sing 217 n n C30 H13 I6I sing 218 n n C31 H14 I6I sing 219 n n C31 H15 I6I sing 220 n n C32 H16 I6I sing 221 n n C32 H17 I6I sing 222 n n C34 H18 I6I sing 223 n n C22 H19 I6I sing 224 n n C22 H20 I6I sing 225 n n C35 H21 I6I sing 226 n n C35 H22 I6I sing 227 n n C36 H23 I6I sing 228 n n C36 H24 I6I sing 229 n n C43 H25 I6I sing 230 n n C44 H26 I6I sing 231 n n C44 H27 I6I sing 232 n n C45 H28 I6I sing 233 n n C45 H29 I6I sing 234 n n N01 H30 I6I sing 235 n n N11 H31 I6I sing 236 n n N11 H32 I6I sing 237 n n N25 H33 I6I sing 238 n n N39 H34 I6I sing 239 n n O27 H35 I6I sing 240 n n O41 H36 I6I sing 241 n n O48 H37 I6I sing 242 n n O50 H38 I6I sing 243 n n # _atom_sites.entry_id 8TLC _atom_sites.fract_transf_matrix[1][1] 0.0063 _atom_sites.fract_transf_matrix[1][2] 0.003638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I6I A 1 601 601 I6I 3E7 . D 3 HOH A 1 701 9 HOH HOH . D 3 HOH A 2 702 6 HOH HOH . D 3 HOH A 3 703 3 HOH HOH . D 3 HOH A 4 704 4 HOH HOH . D 3 HOH A 5 705 2 HOH HOH . D 3 HOH A 6 706 7 HOH HOH . D 3 HOH A 7 707 11 HOH HOH . D 3 HOH A 8 708 5 HOH HOH . D 3 HOH A 9 709 10 HOH HOH . D 3 HOH A 10 710 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 I6I . . . C 2 -39.112 63.61 3.615 1 40.25 ? C02 I6I 601 A 1 HETATM 2 C C04 I6I . . . C 2 -36.949 64.847 3.496 1 37.76 ? C04 I6I 601 A 1 HETATM 3 C C05 I6I . . . C 2 -37.652 64.588 7.123 1 43.1 ? C05 I6I 601 A 1 HETATM 4 C C06 I6I . . . C 2 -36.446 65.281 7.125 1 45.82 ? C06 I6I 601 A 1 HETATM 5 C C08 I6I . . . C 2 -36.92 64.925 5.027 1 49 ? C08 I6I 601 A 1 HETATM 6 C C09 I6I . . . C 2 -37.949 64.363 5.768 1 41.97 ? C09 I6I 601 A 1 HETATM 7 C C12 I6I . . . C 2 -38.414 72.438 3.039 1 61.53 ? C12 I6I 601 A 1 HETATM 8 C C14 I6I . . . C 2 -38.719 71.095 3.246 1 47.11 ? C14 I6I 601 A 1 HETATM 9 C C15 I6I . . . C 2 -36.287 72.113 4.11 1 73.3 ? C15 I6I 601 A 1 HETATM 10 C C16 I6I . . . C 2 -37.803 70.259 3.881 1 42.54 ? C16 I6I 601 A 1 HETATM 11 C C17 I6I . . . C 2 -39.422 73.387 2.33 1 66.16 ? C17 I6I 601 A 1 HETATM 12 N N19 I6I . . . C 2 -40.665 73.795 3.015 1 74.67 ? N19 I6I 601 A 1 HETATM 13 C C20 I6I . . . C 2 -41.605 74.707 2.325 1 77.34 ? C20 I6I 601 A 1 HETATM 14 C C21 I6I . . . C 2 -41.787 75.985 3.189 1 78.86 ? C21 I6I 601 A 1 HETATM 15 O O24 I6I . . . C 2 -41.578 78.736 2.903 1 71.88 ? O24 I6I 601 A 1 HETATM 16 C C26 I6I . . . C 2 -42.929 73.994 2.07 1 73.8 ? C26 I6I 601 A 1 HETATM 17 C C29 I6I . . . C 2 -34.816 66.155 5.492 1 25.91 ? C29 I6I 601 A 1 HETATM 18 C C30 I6I . . . C 2 -34.865 67.619 5.965 1 31.83 ? C30 I6I 601 A 1 HETATM 19 C C31 I6I . . . C 2 -36.012 68.439 5.34 1 40.74 ? C31 I6I 601 A 1 HETATM 20 C C32 I6I . . . C 2 -35.544 69.879 5.028 1 58.74 ? C32 I6I 601 A 1 HETATM 21 C C33 I6I . . . C 2 -36.588 70.771 4.318 1 59.33 ? C33 I6I 601 A 1 HETATM 22 C C34 I6I . . . C 2 -39.351 80.493 2.81 1 93.22 ? C34 I6I 601 A 1 HETATM 23 C C13 I6I . . . C 2 -37.201 72.945 3.472 1 69.23 ? C13 I6I 601 A 1 HETATM 24 C C22 I6I . . . C 2 -40.439 76.718 3.427 1 80.73 ? C22 I6I 601 A 1 HETATM 25 C C23 I6I . . . C 2 -40.526 78.23 3.122 1 83.5 ? C23 I6I 601 A 1 HETATM 26 C C35 I6I . . . C 2 -39.279 81.294 4.137 1 91.42 ? C35 I6I 601 A 1 HETATM 27 C C36 I6I . . . C 2 -40.436 82.312 4.293 1 85.2 ? C36 I6I 601 A 1 HETATM 28 C C37 I6I . . . C 2 -40.745 82.605 5.787 1 79.7 ? C37 I6I 601 A 1 HETATM 29 C C40 I6I . . . C 2 -38.216 80.851 1.854 1 93.9 ? C40 I6I 601 A 1 HETATM 30 C C43 I6I . . . C 2 -42.927 83.791 5.162 1 80 ? C43 I6I 601 A 1 HETATM 31 C C44 I6I . . . C 2 -43.109 85.307 5.28 1 74.53 ? C44 I6I 601 A 1 HETATM 32 C C45 I6I . . . C 2 -43.858 85.903 4.076 1 63.86 ? C45 I6I 601 A 1 HETATM 33 C C46 I6I . . . C 2 -44.707 87.119 4.455 1 67.32 ? C46 I6I 601 A 1 HETATM 34 C C49 I6I . . . C 2 -44.249 83.05 5.344 1 82.5 ? C49 I6I 601 A 1 HETATM 35 F F24 I6I . . . C 2 -36.902 74.266 3.272 1 84.24 ? F24 I6I 601 A 1 HETATM 36 N N01 I6I . . . C 2 -39.082 63.685 5.08 1 32.76 ? N01 I6I 601 A 1 HETATM 37 N N03 I6I . . . C 2 -38.04 64.195 2.834 1 44.8 ? N03 I6I 601 A 1 HETATM 38 N N07 I6I . . . C 2 -36.04 65.464 5.876 1 45.34 ? N07 I6I 601 A 1 HETATM 39 N N11 I6I . . . C 2 -40.215 62.951 2.938 1 47.41 ? N11 I6I 601 A 1 HETATM 40 N N25 I6I . . . C 2 -39.288 79.043 3.103 1 89.1 ? N25 I6I 601 A 1 HETATM 41 N N39 I6I . . . C 2 -41.966 83.327 6.175 1 82.83 ? N39 I6I 601 A 1 HETATM 42 O O10 I6I . . . C 2 -36.079 65.32 2.851 1 25.71 ? O10 I6I 601 A 1 HETATM 43 O O18 I6I . . . C 2 -39.189 73.791 1.238 1 56.38 ? O18 I6I 601 A 1 HETATM 44 O O27 I6I . . . C 2 -43.443 73.276 2.971 1 69.82 ? O27 I6I 601 A 1 HETATM 45 O O28 I6I . . . C 2 -43.51 74.126 0.961 1 65.15 ? O28 I6I 601 A 1 HETATM 46 O O38 I6I . . . C 2 -39.987 82.241 6.625 1 62.83 ? O38 I6I 601 A 1 HETATM 47 O O41 I6I . . . C 2 -37.241 80.066 1.716 1 93.72 ? O41 I6I 601 A 1 HETATM 48 O O42 I6I . . . C 2 -38.255 81.924 1.203 1 93.67 ? O42 I6I 601 A 1 HETATM 49 O O47 I6I . . . C 2 -45.95 87.105 4.249 1 60.92 ? O47 I6I 601 A 1 HETATM 50 O O48 I6I . . . C 2 -44.166 88.133 4.974 1 56.27 ? O48 I6I 601 A 1 HETATM 51 O O50 I6I . . . C 2 -45.07 83.438 6.216 1 79.21 ? O50 I6I 601 A 1 HETATM 52 O O51 I6I . . . C 2 -44.52 82.052 4.624 1 83.79 ? O51 I6I 601 A 1 # _model_server_stats.io_time_ms 138 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #