data_8TLN # _model_server_result.job_id 8ZVWXoSil8qONDOCz_jLqA _model_server_result.datetime_utc '2024-11-26 23:21:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tln # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":324}' # _entry.id 8TLN # _exptl.entry_id 8TLN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TLN _cell.length_a 94.1 _cell.length_b 94.1 _cell.length_c 131.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TLN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C VAL . E VAL 1322 1_555 C N LYS . E LYS 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? metalc ? metalc1 A OD1 ASP 57 E ASP 57 1_555 F CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A OD2 ASP 57 E ASP 57 1_555 F CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A OD1 ASP 59 E ASP 59 1_555 F CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A O GLN 61 E GLN 61 1_555 F CA CA . E CA 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A OD2 ASP 138 E ASP 138 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 A NE2 HIS 142 E HIS 142 1_555 H ZN ZN . E ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc7 A NE2 HIS 146 E HIS 146 1_555 H ZN ZN . E ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc8 A OE2 GLU 166 E GLU 166 1_555 H ZN ZN . E ZN 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc9 A OE1 GLU 177 E GLU 177 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 A OE2 GLU 177 E GLU 177 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc11 A OE2 GLU 177 E GLU 177 1_555 E CA CA . E CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc12 A O ASN 183 E ASN 183 1_555 E CA CA . E CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc13 A OD1 ASP 185 E ASP 185 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc14 A OD2 ASP 185 E ASP 185 1_555 E CA CA . E CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 A O GLU 187 E GLU 187 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc16 A OE1 GLU 190 E GLU 190 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc17 A OE2 GLU 190 E GLU 190 1_555 D CA CA . E CA 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc18 A OE2 GLU 190 E GLU 190 1_555 E CA CA . E CA 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc19 A O TYR 193 E TYR 193 1_555 G CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc20 A O THR 194 E THR 194 1_555 G CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc21 A OG1 THR 194 E THR 194 1_555 G CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc22 A O ILE 197 E ILE 197 1_555 G CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc23 A OD1 ASP 200 E ASP 200 1_555 G CA CA . E CA 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc24 D CA CA . E CA 317 1_555 J O HOH . E HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc25 E CA CA . E CA 318 1_555 J O HOH . E HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc26 E CA CA . E CA 318 1_555 J O HOH . E HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc27 F CA CA . E CA 319 1_555 J O HOH . E HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc28 F CA CA . E CA 319 1_555 J O HOH . E HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc29 F CA CA . E CA 319 1_555 J O HOH . E HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc30 G CA CA . E CA 320 1_555 J O HOH . E HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc31 G CA CA . E CA 320 1_555 J O HOH . E HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc32 H ZN ZN . E ZN 321 1_555 J O HOH . E HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 70 n n S C1 DMS sing 71 n n S C2 DMS sing 72 n n C1 H11 DMS sing 73 n n C1 H12 DMS sing 74 n n C1 H13 DMS sing 75 n n C2 H21 DMS sing 76 n n C2 H22 DMS sing 77 n n C2 H23 DMS sing 78 n n # _atom_sites.entry_id 8TLN _atom_sites.fract_transf_matrix[1][1] 0.010627 _atom_sites.fract_transf_matrix[1][2] 0.006135 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VAL E 1 1322 1322 VAL VAL . C 3 LYS E 1 1323 1323 LYS LYS . D 4 CA E 1 317 317 CA CA . E 4 CA E 1 318 318 CA CA . F 4 CA E 1 319 319 CA CA . G 4 CA E 1 320 320 CA CA . H 5 ZN E 1 321 321 ZN ZN . I 6 DMS E 1 324 324 DMS DMS . J 7 HOH E 1 331 331 HOH HOH . J 7 HOH E 2 332 332 HOH HOH . J 7 HOH E 3 334 334 HOH HOH . J 7 HOH E 4 335 335 HOH HOH . J 7 HOH E 5 337 337 HOH HOH . J 7 HOH E 6 338 338 HOH HOH . J 7 HOH E 7 339 339 HOH HOH . J 7 HOH E 8 340 340 HOH HOH . J 7 HOH E 9 341 341 HOH HOH . J 7 HOH E 10 342 342 HOH HOH . J 7 HOH E 11 343 343 HOH HOH . J 7 HOH E 12 344 344 HOH HOH . J 7 HOH E 13 345 345 HOH HOH . J 7 HOH E 14 346 346 HOH HOH . J 7 HOH E 15 347 347 HOH HOH . J 7 HOH E 16 348 348 HOH HOH . J 7 HOH E 17 349 349 HOH HOH . J 7 HOH E 18 350 350 HOH HOH . J 7 HOH E 19 351 351 HOH HOH . J 7 HOH E 20 352 352 HOH HOH . J 7 HOH E 21 353 353 HOH HOH . J 7 HOH E 22 354 354 HOH HOH . J 7 HOH E 23 355 355 HOH HOH . J 7 HOH E 24 356 356 HOH HOH . J 7 HOH E 25 357 357 HOH HOH . J 7 HOH E 26 359 359 HOH HOH . J 7 HOH E 27 361 361 HOH HOH . J 7 HOH E 28 362 362 HOH HOH . J 7 HOH E 29 366 366 HOH HOH . J 7 HOH E 30 368 368 HOH HOH . J 7 HOH E 31 371 371 HOH HOH . J 7 HOH E 32 373 373 HOH HOH . J 7 HOH E 33 374 374 HOH HOH . J 7 HOH E 34 377 377 HOH HOH . J 7 HOH E 35 379 379 HOH HOH . J 7 HOH E 36 380 380 HOH HOH . J 7 HOH E 37 381 381 HOH HOH . J 7 HOH E 38 383 383 HOH HOH . J 7 HOH E 39 384 384 HOH HOH . J 7 HOH E 40 386 386 HOH HOH . J 7 HOH E 41 387 387 HOH HOH . J 7 HOH E 42 392 392 HOH HOH . J 7 HOH E 43 393 393 HOH HOH . J 7 HOH E 44 395 395 HOH HOH . J 7 HOH E 45 397 397 HOH HOH . J 7 HOH E 46 398 398 HOH HOH . J 7 HOH E 47 403 403 HOH HOH . J 7 HOH E 48 404 404 HOH HOH . J 7 HOH E 49 405 405 HOH HOH . J 7 HOH E 50 407 407 HOH HOH . J 7 HOH E 51 408 408 HOH HOH . J 7 HOH E 52 410 410 HOH HOH . J 7 HOH E 53 412 412 HOH HOH . J 7 HOH E 54 413 413 HOH HOH . J 7 HOH E 55 414 414 HOH HOH . J 7 HOH E 56 415 415 HOH HOH . J 7 HOH E 57 419 419 HOH HOH . J 7 HOH E 58 420 420 HOH HOH . J 7 HOH E 59 422 422 HOH HOH . J 7 HOH E 60 423 423 HOH HOH . J 7 HOH E 61 424 424 HOH HOH . J 7 HOH E 62 425 425 HOH HOH . J 7 HOH E 63 426 426 HOH HOH . J 7 HOH E 64 428 428 HOH HOH . J 7 HOH E 65 434 434 HOH HOH . J 7 HOH E 66 444 444 HOH HOH . J 7 HOH E 67 450 450 HOH HOH . J 7 HOH E 68 454 454 HOH HOH . J 7 HOH E 69 455 455 HOH HOH . J 7 HOH E 70 457 457 HOH HOH . J 7 HOH E 71 463 463 HOH HOH . J 7 HOH E 72 464 464 HOH HOH . J 7 HOH E 73 468 468 HOH HOH . J 7 HOH E 74 469 469 HOH HOH . J 7 HOH E 75 470 470 HOH HOH . J 7 HOH E 76 475 475 HOH HOH . J 7 HOH E 77 476 476 HOH HOH . J 7 HOH E 78 477 477 HOH HOH . J 7 HOH E 79 478 478 HOH HOH . J 7 HOH E 80 479 479 HOH HOH . J 7 HOH E 81 480 480 HOH HOH . J 7 HOH E 82 481 481 HOH HOH . J 7 HOH E 83 482 482 HOH HOH . J 7 HOH E 84 483 483 HOH HOH . J 7 HOH E 85 484 484 HOH HOH . J 7 HOH E 86 487 487 HOH HOH . J 7 HOH E 87 491 491 HOH HOH . J 7 HOH E 88 493 493 HOH HOH . J 7 HOH E 89 495 495 HOH HOH . J 7 HOH E 90 496 496 HOH HOH . J 7 HOH E 91 501 501 HOH HOH . J 7 HOH E 92 502 502 HOH HOH . J 7 HOH E 93 503 503 HOH HOH . J 7 HOH E 94 504 504 HOH HOH . J 7 HOH E 95 506 506 HOH HOH . J 7 HOH E 96 507 507 HOH HOH . J 7 HOH E 97 508 508 HOH HOH . J 7 HOH E 98 509 509 HOH HOH . J 7 HOH E 99 512 512 HOH HOH . J 7 HOH E 100 513 513 HOH HOH . J 7 HOH E 101 516 516 HOH HOH . J 7 HOH E 102 519 519 HOH HOH . J 7 HOH E 103 521 521 HOH HOH . J 7 HOH E 104 523 523 HOH HOH . J 7 HOH E 105 524 524 HOH HOH . J 7 HOH E 106 525 525 HOH HOH . J 7 HOH E 107 527 527 HOH HOH . J 7 HOH E 108 528 528 HOH HOH . J 7 HOH E 109 531 531 HOH HOH . J 7 HOH E 110 534 534 HOH HOH . J 7 HOH E 111 535 535 HOH HOH . J 7 HOH E 112 536 536 HOH HOH . J 7 HOH E 113 537 537 HOH HOH . J 7 HOH E 114 538 538 HOH HOH . J 7 HOH E 115 539 539 HOH HOH . J 7 HOH E 116 540 540 HOH HOH . J 7 HOH E 117 542 542 HOH HOH . J 7 HOH E 118 543 543 HOH HOH . J 7 HOH E 119 600 600 HOH HOH . J 7 HOH E 120 601 601 HOH HOH . J 7 HOH E 121 602 602 HOH HOH . J 7 HOH E 122 603 603 HOH HOH . J 7 HOH E 123 604 604 HOH HOH . J 7 HOH E 124 605 605 HOH HOH . J 7 HOH E 125 606 606 HOH HOH . J 7 HOH E 126 607 607 HOH HOH . J 7 HOH E 127 608 608 HOH HOH . J 7 HOH E 128 609 609 HOH HOH . J 7 HOH E 129 610 610 HOH HOH . J 7 HOH E 130 611 611 HOH HOH . J 7 HOH E 131 612 612 HOH HOH . J 7 HOH E 132 613 613 HOH HOH . J 7 HOH E 133 614 614 HOH HOH . J 7 HOH E 134 615 615 HOH HOH . J 7 HOH E 135 619 619 HOH HOH . J 7 HOH E 136 620 620 HOH HOH . J 7 HOH E 137 621 621 HOH HOH . J 7 HOH E 138 623 623 HOH HOH . J 7 HOH E 139 624 624 HOH HOH . J 7 HOH E 140 626 626 HOH HOH . J 7 HOH E 141 628 628 HOH HOH . J 7 HOH E 142 629 629 HOH HOH . J 7 HOH E 143 630 630 HOH HOH . J 7 HOH E 144 650 650 HOH HOH . J 7 HOH E 145 651 651 HOH HOH . J 7 HOH E 146 652 652 HOH HOH . J 7 HOH E 147 653 653 HOH HOH . J 7 HOH E 148 654 654 HOH HOH . J 7 HOH E 149 655 655 HOH HOH . J 7 HOH E 150 656 656 HOH HOH . J 7 HOH E 151 657 657 HOH HOH . J 7 HOH E 152 658 658 HOH HOH . J 7 HOH E 153 659 659 HOH HOH . J 7 HOH E 154 660 660 HOH HOH . J 7 HOH E 155 670 670 HOH HOH . J 7 HOH E 156 671 671 HOH HOH . J 7 HOH E 157 672 672 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 6 63.493 46.221 -11.718 1 62.04 ? S DMS 324 E 1 HETATM 2 O O DMS . . . I 6 64.265 45.747 -12.88 1 57.4 ? O DMS 324 E 1 HETATM 3 C C1 DMS . . . I 6 64.594 47.01 -10.655 1 40.8 ? C1 DMS 324 E 1 HETATM 4 C C2 DMS . . . I 6 62.936 44.782 -10.848 1 56.27 ? C2 DMS 324 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #