data_8TLQ # _model_server_result.job_id X29jTGSh4CXsir7nVmEPAw _model_server_result.datetime_utc '2024-11-14 18:55:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tlq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1602}' # _entry.id 8TLQ # _exptl.entry_id 8TLQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 467.157 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TLQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 1010 A PHE 976 1_555 I CA CA . A CA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A OD2 ASP 1178 A ASP 1144 1_555 I CA CA . A CA 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A SG CYS 1480 A CYS 1446 1_555 K FE4 SF4 . A SF4 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A SG CYS 1483 A CYS 1449 1_555 K FE2 SF4 . A SF4 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 A SG CYS 1502 A CYS 1468 1_555 K FE3 SF4 . A SF4 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 A SG CYS 1507 A CYS 1473 1_555 K FE1 SF4 . A SF4 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 I CA CA . A CA 1601 1_555 J O1A DCP . A DCP 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc8 I CA CA . A CA 1601 1_555 J O3A DCP . A DCP 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 I CA CA . A CA 1601 1_555 J O1B DCP . A DCP 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc10 I CA CA . A CA 1601 1_555 J O3B DCP . A DCP 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc11 I CA CA . A CA 1601 1_555 J O2G DCP . A DCP 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? hydrog 'DC-DG PAIR' hydrog1 G N4 DC 20 P DC 105 1_555 H O6 DG 16 T DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 G N3 DC 21 P DC 106 1_555 H N1 DG 15 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 G N4 DC 21 P DC 106 1_555 H O6 DG 15 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 G O2 DC 21 P DC 106 1_555 H N2 DG 15 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 G N3 DC 22 P DC 107 1_555 H N1 DG 14 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 G N4 DC 22 P DC 107 1_555 H O6 DG 14 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 G O2 DC 22 P DC 107 1_555 H N2 DG 14 T DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 G N3 DT 23 P DT 108 1_555 H N1 DA 13 T DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 G O4 DT 23 P DT 108 1_555 H N6 DA 13 T DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 G N3 DC 24 P DC 109 1_555 H N1 DG 12 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 G N4 DC 24 P DC 109 1_555 H O6 DG 12 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 G O2 DC 24 P DC 109 1_555 H N2 DG 12 T DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 G N3 DC 25 P DC 110 1_555 H N1 DG 11 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 G N4 DC 25 P DC 110 1_555 H O6 DG 11 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 G O2 DC 25 P DC 110 1_555 H N2 DG 11 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 G N3 DC 26 P DC 111 1_555 H N1 DG 10 T DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 G N4 DC 26 P DC 111 1_555 H O6 DG 10 T DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 G O2 DC 26 P DC 111 1_555 H N2 DG 10 T DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 G N3 DC 27 P DC 112 1_555 H N1 DG 9 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 G N4 DC 27 P DC 112 1_555 H O6 DG 9 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 G O2 DC 27 P DC 112 1_555 H N2 DG 9 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 G N3 DT 28 P DT 113 1_555 H N1 DA 8 T DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 G O4 DT 28 P DT 113 1_555 H N6 DA 8 T DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 G N1 DA 29 P DA 114 1_555 H N3 DT 7 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 G N6 DA 29 P DA 114 1_555 H O4 DT 7 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 G N3 DC 30 P DC 115 1_555 H N1 DG 6 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 G N4 DC 30 P DC 115 1_555 H O6 DG 6 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 G O2 DC 30 P DC 115 1_555 H N2 DG 6 T DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 156 n n N1 C6 DCP sing 157 n n N1 C1' DCP sing 158 n n C2 N3 DCP sing 159 n n C2 O2 DCP doub 160 n n N3 C4 DCP doub 161 n n C4 C5 DCP sing 162 n n C4 N4 DCP sing 163 n n C5 C6 DCP doub 164 n n C5 H5 DCP sing 165 n n C6 H6 DCP sing 166 n n N4 HN41 DCP sing 167 n n N4 HN42 DCP sing 168 n n C1' C2' DCP sing 169 n n C1' O4' DCP sing 170 n n C1' H1' DCP sing 171 n n C2' C3' DCP sing 172 n n C2' "H2'1" DCP sing 173 n n C2' "H2'2" DCP sing 174 n n C3' C4' DCP sing 175 n n C3' O3' DCP sing 176 n n C3' H3' DCP sing 177 n n C4' O4' DCP sing 178 n n C4' C5' DCP sing 179 n n C4' H4' DCP sing 180 n n O3' HO3' DCP sing 181 n n C5' O5' DCP sing 182 n n C5' "H5'1" DCP sing 183 n n C5' "H5'2" DCP sing 184 n n O5' PA DCP sing 185 n n PA O1A DCP doub 186 n n PA O2A DCP sing 187 n n PA O3A DCP sing 188 n n O2A HOA2 DCP sing 189 n n O3A PB DCP sing 190 n n PB O1B DCP doub 191 n n PB O2B DCP sing 192 n n PB O3B DCP sing 193 n n O2B HOB2 DCP sing 194 n n O3B PG DCP sing 195 n n PG O1G DCP doub 196 n n PG O2G DCP sing 197 n n PG O3G DCP sing 198 n n O2G HOG2 DCP sing 199 n n O3G HOG3 DCP sing 200 n n # _atom_sites.entry_id 8TLQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 CA A 1 1601 1602 CA CA . J 8 DCP A 1 1602 1603 DCP DCP . K 9 SF4 A 1 1603 1604 SF4 SF4 . L 10 HOH A 1 1701 28 HOH HOH . L 10 HOH A 2 1702 37 HOH HOH . L 10 HOH A 3 1703 41 HOH HOH . L 10 HOH A 4 1704 8 HOH HOH . L 10 HOH A 5 1705 11 HOH HOH . L 10 HOH A 6 1706 31 HOH HOH . L 10 HOH A 7 1707 44 HOH HOH . L 10 HOH A 8 1708 40 HOH HOH . L 10 HOH A 9 1709 27 HOH HOH . L 10 HOH A 10 1710 7 HOH HOH . L 10 HOH A 11 1711 38 HOH HOH . L 10 HOH A 12 1712 42 HOH HOH . L 10 HOH A 13 1713 34 HOH HOH . L 10 HOH A 14 1714 17 HOH HOH . L 10 HOH A 15 1715 15 HOH HOH . L 10 HOH A 16 1716 33 HOH HOH . L 10 HOH A 17 1717 9 HOH HOH . L 10 HOH A 18 1718 20 HOH HOH . L 10 HOH A 19 1719 19 HOH HOH . L 10 HOH A 20 1720 32 HOH HOH . L 10 HOH A 21 1721 43 HOH HOH . L 10 HOH A 22 1722 5 HOH HOH . L 10 HOH A 23 1723 16 HOH HOH . L 10 HOH A 24 1724 18 HOH HOH . L 10 HOH A 25 1725 35 HOH HOH . L 10 HOH A 26 1726 30 HOH HOH . L 10 HOH A 27 1727 13 HOH HOH . L 10 HOH A 28 1728 4 HOH HOH . L 10 HOH A 29 1729 36 HOH HOH . L 10 HOH A 30 1730 14 HOH HOH . L 10 HOH A 31 1731 10 HOH HOH . L 10 HOH A 32 1732 29 HOH HOH . M 10 HOH E 1 301 21 HOH HOH . M 10 HOH E 2 302 46 HOH HOH . N 10 HOH F 1 501 39 HOH HOH . N 10 HOH F 2 502 45 HOH HOH . O 10 HOH G 1 401 22 HOH HOH . P 10 HOH B 1 1001 47 HOH HOH . P 10 HOH B 2 1002 24 HOH HOH . P 10 HOH B 3 1003 23 HOH HOH . P 10 HOH B 4 1004 25 HOH HOH . Q 10 HOH T 1 101 26 HOH HOH . Q 10 HOH T 2 102 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . J 8 159.729 163.613 182.942 1 56.65 ? N1 DCP 1602 A 1 HETATM 2 C C2 DCP . . . J 8 158.942 162.886 183.84 1 56.65 ? C2 DCP 1602 A 1 HETATM 3 N N3 DCP . . . J 8 158.459 161.674 183.456 1 56.65 ? N3 DCP 1602 A 1 HETATM 4 C C4 DCP . . . J 8 158.734 161.186 182.236 1 56.65 ? C4 DCP 1602 A 1 HETATM 5 C C5 DCP . . . J 8 159.535 161.912 181.305 1 56.65 ? C5 DCP 1602 A 1 HETATM 6 C C6 DCP . . . J 8 160.005 163.107 181.695 1 56.65 ? C6 DCP 1602 A 1 HETATM 7 O O2 DCP . . . J 8 158.71 163.365 184.951 1 56.65 ? O2 DCP 1602 A 1 HETATM 8 N N4 DCP . . . J 8 158.236 159.992 181.91 1 56.65 ? N4 DCP 1602 A 1 HETATM 9 C C1' DCP . . . J 8 160.242 164.925 183.381 1 56.65 ? C1' DCP 1602 A 1 HETATM 10 C C2' DCP . . . J 8 161.59 164.859 184.09 1 56.65 ? C2' DCP 1602 A 1 HETATM 11 C C3' DCP . . . J 8 162.582 165.199 182.988 1 56.65 ? C3' DCP 1602 A 1 HETATM 12 C C4' DCP . . . J 8 161.788 166.176 182.13 1 56.65 ? C4' DCP 1602 A 1 HETATM 13 O O4' DCP . . . J 8 160.416 165.74 182.229 1 56.65 ? O4' DCP 1602 A 1 HETATM 14 O O3' DCP . . . J 8 163.741 165.84 183.523 1 56.65 ? O3' DCP 1602 A 1 HETATM 15 C C5' DCP . . . J 8 162.2 166.225 180.68 1 56.65 ? C5' DCP 1602 A 1 HETATM 16 O O5' DCP . . . J 8 162.388 164.877 180.199 1 56.65 ? O5' DCP 1602 A 1 HETATM 17 P PA DCP . . . J 8 162.956 164.594 178.753 1 56.65 ? PA DCP 1602 A 1 HETATM 18 O O1A DCP . . . J 8 162.791 165.768 177.873 1 56.65 ? O1A DCP 1602 A 1 HETATM 19 O O2A DCP . . . J 8 162.321 163.305 178.231 1 56.65 ? O2A DCP 1602 A 1 HETATM 20 O O3A DCP . . . J 8 164.492 164.282 179.021 1 56.65 ? O3A DCP 1602 A 1 HETATM 21 P PB DCP . . . J 8 165.477 164.287 180.271 1 56.65 ? PB DCP 1602 A 1 HETATM 22 O O1B DCP . . . J 8 165.351 165.655 180.941 1 56.65 ? O1B DCP 1602 A 1 HETATM 23 O O2B DCP . . . J 8 165.257 163.123 181.153 1 56.65 ? O2B DCP 1602 A 1 HETATM 24 O O3B DCP . . . J 8 166.9 164.24 179.557 1 56.65 ? O3B DCP 1602 A 1 HETATM 25 P PG DCP . . . J 8 167.531 164.254 178.087 1 56.65 ? PG DCP 1602 A 1 HETATM 26 O O1G DCP . . . J 8 166.911 163.038 177.391 1 56.65 ? O1G DCP 1602 A 1 HETATM 27 O O2G DCP . . . J 8 166.983 165.531 177.444 1 56.65 ? O2G DCP 1602 A 1 HETATM 28 O O3G DCP . . . J 8 169.02 164.209 178.155 1 56.65 ? O3G DCP 1602 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 28 #