data_8TLR # _model_server_result.job_id zJXl2jWynLrG8dT7KnPLdA _model_server_result.datetime_utc '2025-08-07 08:21:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8TLR # _exptl.entry_id 8TLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.61 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMG 510 (bound form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TLR _cell.length_a 92.449 _cell.length_b 92.449 _cell.length_c 119.711 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 12 A CYS 12 1_555 C C25 MOV . A MOV 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 B O2B GDP . A GDP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 D MG MG . A MG 203 1_555 E O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 D MG MG . A MG 203 1_555 E O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc5 D MG MG . A MG 203 1_555 E O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc6 D MG MG . A MG 203 1_555 E O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C30 H32 F2 N6 O3' _chem_comp.formula_weight 562.61 _chem_comp.id MOV _chem_comp.mon_nstd_flag . _chem_comp.name 'AMG 510 (bound form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-4-[(2S)-2-methyl-4-propanoylpiperazin-1-yl]-1-[4-methyl-2-(propan-2-yl)pyridin-3-yl]pyrido[2,3-d]pyrimidin-2(1H)-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C13 MOV sing 282 n n O3 C26 MOV sing 283 n n C27 C26 MOV doub 284 n y C27 C28 MOV sing 285 n y C26 C6 MOV sing 286 n y C13 C12 MOV doub 287 n y C13 C9 MOV sing 288 n y C12 C11 MOV sing 289 n y C19 C20 MOV sing 290 n n C19 N6 MOV sing 291 n n C28 C29 MOV doub 292 n y C6 C3 MOV sing 293 n n C6 C30 MOV doub 294 n y F1 C4 MOV sing 295 n n C3 C4 MOV doub 296 n y C3 N1 MOV sing 297 n y C4 C5 MOV sing 298 n y N1 C2 MOV doub 299 n y C5 C1 MOV doub 300 n y C2 C1 MOV sing 301 n y C2 N4 MOV sing 302 n n C20 N2 MOV sing 303 n n C20 C21 MOV sing 304 n n C1 C7 MOV sing 305 n n C9 N4 MOV sing 306 n n C9 C10 MOV doub 307 n y C11 N5 MOV doub 308 n y N4 C8 MOV sing 309 n n C7 N3 MOV doub 310 n n C7 N2 MOV sing 311 n n C8 N3 MOV sing 312 n n C8 O1 MOV doub 313 n n N2 C17 MOV sing 314 n n C24 C23 MOV sing 315 n n C24 C25 MOV sing 316 n n C17 C18 MOV sing 317 n n N6 C23 MOV sing 318 n n N6 C18 MOV sing 319 n n C29 C30 MOV sing 320 n y C30 F2 MOV sing 321 n n C23 O2 MOV doub 322 n n N5 C10 MOV sing 323 n y C10 C14 MOV sing 324 n n C14 C16 MOV sing 325 n n C14 C15 MOV sing 326 n n C21 H1 MOV sing 327 n n C21 H2 MOV sing 328 n n C21 H3 MOV sing 329 n n C20 H4 MOV sing 330 n n C19 H5 MOV sing 331 n n C19 H6 MOV sing 332 n n C24 H7 MOV sing 333 n n C24 H8 MOV sing 334 n n C25 H9 MOV sing 335 n n C25 H10 MOV sing 336 n n C25 H11 MOV sing 337 n n C18 H12 MOV sing 338 n n C18 H13 MOV sing 339 n n C17 H14 MOV sing 340 n n C17 H15 MOV sing 341 n n C22 H16 MOV sing 342 n n C22 H17 MOV sing 343 n n C22 H18 MOV sing 344 n n C12 H19 MOV sing 345 n n C11 H20 MOV sing 346 n n C14 H21 MOV sing 347 n n C16 H22 MOV sing 348 n n C16 H23 MOV sing 349 n n C16 H24 MOV sing 350 n n C15 H25 MOV sing 351 n n C15 H26 MOV sing 352 n n C15 H27 MOV sing 353 n n C5 H28 MOV sing 354 n n C29 H29 MOV sing 355 n n C28 H30 MOV sing 356 n n C27 H31 MOV sing 357 n n O3 H32 MOV sing 358 n n # _atom_sites.entry_id 8TLR _atom_sites.fract_transf_matrix[1][1] 0.010817 _atom_sites.fract_transf_matrix[1][2] 0.006245 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 302 GDP GDP . C 3 MOV A 1 202 1 MOV MOV . D 4 MG A 1 203 1 MG MG . E 5 HOH A 1 301 66 HOH HOH . E 5 HOH A 2 302 74 HOH HOH . E 5 HOH A 3 303 99 HOH HOH . E 5 HOH A 4 304 59 HOH HOH . E 5 HOH A 5 305 40 HOH HOH . E 5 HOH A 6 306 80 HOH HOH . E 5 HOH A 7 307 67 HOH HOH . E 5 HOH A 8 308 65 HOH HOH . E 5 HOH A 9 309 3 HOH HOH . E 5 HOH A 10 310 5 HOH HOH . E 5 HOH A 11 311 32 HOH HOH . E 5 HOH A 12 312 44 HOH HOH . E 5 HOH A 13 313 20 HOH HOH . E 5 HOH A 14 314 12 HOH HOH . E 5 HOH A 15 315 72 HOH HOH . E 5 HOH A 16 316 102 HOH HOH . E 5 HOH A 17 317 27 HOH HOH . E 5 HOH A 18 318 69 HOH HOH . E 5 HOH A 19 319 37 HOH HOH . E 5 HOH A 20 320 38 HOH HOH . E 5 HOH A 21 321 79 HOH HOH . E 5 HOH A 22 322 83 HOH HOH . E 5 HOH A 23 323 95 HOH HOH . E 5 HOH A 24 324 71 HOH HOH . E 5 HOH A 25 325 13 HOH HOH . E 5 HOH A 26 326 54 HOH HOH . E 5 HOH A 27 327 86 HOH HOH . E 5 HOH A 28 328 41 HOH HOH . E 5 HOH A 29 329 104 HOH HOH . E 5 HOH A 30 330 64 HOH HOH . E 5 HOH A 31 331 29 HOH HOH . E 5 HOH A 32 332 14 HOH HOH . E 5 HOH A 33 333 25 HOH HOH . E 5 HOH A 34 334 19 HOH HOH . E 5 HOH A 35 335 7 HOH HOH . E 5 HOH A 36 336 28 HOH HOH . E 5 HOH A 37 337 58 HOH HOH . E 5 HOH A 38 338 9 HOH HOH . E 5 HOH A 39 339 42 HOH HOH . E 5 HOH A 40 340 109 HOH HOH . E 5 HOH A 41 341 43 HOH HOH . E 5 HOH A 42 342 4 HOH HOH . E 5 HOH A 43 343 98 HOH HOH . E 5 HOH A 44 344 61 HOH HOH . E 5 HOH A 45 345 97 HOH HOH . E 5 HOH A 46 346 103 HOH HOH . E 5 HOH A 47 347 81 HOH HOH . E 5 HOH A 48 348 11 HOH HOH . E 5 HOH A 49 349 70 HOH HOH . E 5 HOH A 50 350 17 HOH HOH . E 5 HOH A 51 351 15 HOH HOH . E 5 HOH A 52 352 112 HOH HOH . E 5 HOH A 53 353 89 HOH HOH . E 5 HOH A 54 354 8 HOH HOH . E 5 HOH A 55 355 33 HOH HOH . E 5 HOH A 56 356 6 HOH HOH . E 5 HOH A 57 357 77 HOH HOH . E 5 HOH A 58 358 34 HOH HOH . E 5 HOH A 59 359 23 HOH HOH . E 5 HOH A 60 360 49 HOH HOH . E 5 HOH A 61 361 2 HOH HOH . E 5 HOH A 62 362 56 HOH HOH . E 5 HOH A 63 363 46 HOH HOH . E 5 HOH A 64 364 31 HOH HOH . E 5 HOH A 65 365 45 HOH HOH . E 5 HOH A 66 366 51 HOH HOH . E 5 HOH A 67 367 18 HOH HOH . E 5 HOH A 68 368 30 HOH HOH . E 5 HOH A 69 369 35 HOH HOH . E 5 HOH A 70 370 52 HOH HOH . E 5 HOH A 71 371 55 HOH HOH . E 5 HOH A 72 372 92 HOH HOH . E 5 HOH A 73 373 107 HOH HOH . E 5 HOH A 74 374 106 HOH HOH . E 5 HOH A 75 375 62 HOH HOH . E 5 HOH A 76 376 75 HOH HOH . E 5 HOH A 77 377 16 HOH HOH . E 5 HOH A 78 378 22 HOH HOH . E 5 HOH A 79 379 21 HOH HOH . E 5 HOH A 80 380 36 HOH HOH . E 5 HOH A 81 381 24 HOH HOH . E 5 HOH A 82 382 39 HOH HOH . E 5 HOH A 83 383 96 HOH HOH . E 5 HOH A 84 384 50 HOH HOH . E 5 HOH A 85 385 63 HOH HOH . E 5 HOH A 86 386 82 HOH HOH . E 5 HOH A 87 387 93 HOH HOH . E 5 HOH A 88 388 85 HOH HOH . E 5 HOH A 89 389 100 HOH HOH . E 5 HOH A 90 390 84 HOH HOH . E 5 HOH A 91 391 48 HOH HOH . E 5 HOH A 92 392 101 HOH HOH . E 5 HOH A 93 393 108 HOH HOH . E 5 HOH A 94 394 88 HOH HOH . E 5 HOH A 95 395 110 HOH HOH . E 5 HOH A 96 396 47 HOH HOH . E 5 HOH A 97 397 90 HOH HOH . E 5 HOH A 98 398 105 HOH HOH . E 5 HOH A 99 399 73 HOH HOH . E 5 HOH A 100 400 10 HOH HOH . E 5 HOH A 101 401 68 HOH HOH . E 5 HOH A 102 402 87 HOH HOH . E 5 HOH A 103 403 94 HOH HOH . E 5 HOH A 104 404 53 HOH HOH . E 5 HOH A 105 405 111 HOH HOH . E 5 HOH A 106 406 76 HOH HOH . E 5 HOH A 107 407 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 MOV . . . C 3 0.311 41.916 2.523 1 24.12 ? C21 MOV 202 A 1 HETATM 2 C C20 MOV . . . C 3 0.267 40.767 3.537 1 21.22 ? C20 MOV 202 A 1 HETATM 3 C C19 MOV . . . C 3 -1.191 40.464 3.859 1 25.54 ? C19 MOV 202 A 1 HETATM 4 N N6 MOV . . . C 3 -1.902 39.824 2.814 1 21.98 ? N6 MOV 202 A 1 HETATM 5 C C23 MOV . . . C 3 -3.29 40.073 2.55 1 24.51 ? C23 MOV 202 A 1 HETATM 6 O O2 MOV . . . C 3 -3.777 39.469 1.654 1 18.76 ? O2 MOV 202 A 1 HETATM 7 C C24 MOV . . . C 3 -4.065 41.063 3.436 1 20.68 ? C24 MOV 202 A 1 HETATM 8 C C25 MOV . . . C 3 -4.89 42.113 2.692 1 25.2 ? C25 MOV 202 A 1 HETATM 9 C C18 MOV . . . C 3 -1.192 38.909 2.022 1 24.54 ? C18 MOV 202 A 1 HETATM 10 C C17 MOV . . . C 3 0.02 38.425 2.78 1 26.33 ? C17 MOV 202 A 1 HETATM 11 N N2 MOV . . . C 3 0.992 39.543 3.059 1 19.36 ? N2 MOV 202 A 1 HETATM 12 C C7 MOV . . . C 3 2.443 39.488 2.912 1 19.51 ? C7 MOV 202 A 1 HETATM 13 N N3 MOV . . . C 3 3.092 40.605 3.211 1 21.76 ? N3 MOV 202 A 1 HETATM 14 C C8 MOV . . . C 3 4.407 40.663 3.091 1 24.37 ? C8 MOV 202 A 1 HETATM 15 O O1 MOV . . . C 3 5.059 41.859 3.409 1 25.05 ? O1 MOV 202 A 1 HETATM 16 N N4 MOV . . . C 3 5.136 39.634 2.703 1 20.58 ? N4 MOV 202 A 1 HETATM 17 C C9 MOV . . . C 3 6.576 39.815 2.594 1 22.12 ? C9 MOV 202 A 1 HETATM 18 C C13 MOV . . . C 3 7.408 39.414 3.628 1 23.24 ? C13 MOV 202 A 1 HETATM 19 C C22 MOV . . . C 3 6.836 38.764 4.883 1 25.95 ? C22 MOV 202 A 1 HETATM 20 C C12 MOV . . . C 3 8.767 39.627 3.478 1 20.84 ? C12 MOV 202 A 1 HETATM 21 C C11 MOV . . . C 3 9.229 40.217 2.314 1 23.89 ? C11 MOV 202 A 1 HETATM 22 N N5 MOV . . . C 3 8.412 40.596 1.35 1 22.22 ? N5 MOV 202 A 1 HETATM 23 C C10 MOV . . . C 3 7.11 40.41 1.459 1 21.01 ? C10 MOV 202 A 1 HETATM 24 C C14 MOV . . . C 3 6.199 40.86 0.31 1 19.34 ? C14 MOV 202 A 1 HETATM 25 C C16 MOV . . . C 3 6.521 40.058 -0.948 1 18.02 ? C16 MOV 202 A 1 HETATM 26 C C15 MOV . . . C 3 6.349 42.348 0.049 1 23.57 ? C15 MOV 202 A 1 HETATM 27 C C2 MOV . . . C 3 4.552 38.448 2.375 1 19.04 ? C2 MOV 202 A 1 HETATM 28 N N1 MOV . . . C 3 5.34 37.415 1.965 1 18.24 ? N1 MOV 202 A 1 HETATM 29 C C1 MOV . . . C 3 3.196 38.335 2.479 1 17.92 ? C1 MOV 202 A 1 HETATM 30 C C5 MOV . . . C 3 2.644 37.063 2.139 1 21.57 ? C5 MOV 202 A 1 HETATM 31 C C4 MOV . . . C 3 3.452 36.012 1.731 1 19.36 ? C4 MOV 202 A 1 HETATM 32 F F1 MOV . . . C 3 2.879 34.816 1.435 1 20.34 ? F1 MOV 202 A 1 HETATM 33 C C3 MOV . . . C 3 4.834 36.226 1.656 1 20.06 ? C3 MOV 202 A 1 HETATM 34 C C6 MOV . . . C 3 5.751 35.109 1.186 1 22.35 ? C6 MOV 202 A 1 HETATM 35 C C30 MOV . . . C 3 5.559 34.589 -0.093 1 21.67 ? C30 MOV 202 A 1 HETATM 36 F F2 MOV . . . C 3 4.55 35.08 -0.874 1 21.81 ? F2 MOV 202 A 1 HETATM 37 C C29 MOV . . . C 3 6.371 33.576 -0.569 1 20.53 ? C29 MOV 202 A 1 HETATM 38 C C28 MOV . . . C 3 7.387 33.086 0.237 1 22.69 ? C28 MOV 202 A 1 HETATM 39 C C27 MOV . . . C 3 7.586 33.608 1.507 1 23.96 ? C27 MOV 202 A 1 HETATM 40 C C26 MOV . . . C 3 6.774 34.626 1.982 1 24.61 ? C26 MOV 202 A 1 HETATM 41 O O3 MOV . . . C 3 6.958 35.172 3.257 1 24.4 ? O3 MOV 202 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 41 #