data_8TLZ # _model_server_result.job_id V46yEgDC1pWKeovEn2HNeQ _model_server_result.datetime_utc '2024-10-19 20:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 8TLZ # _exptl.entry_id 8TLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TLZ _cell.length_a 127.823 _cell.length_b 127.823 _cell.length_c 157.017 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,C,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n C BMA 3 C 3 BMA C 3 MAN 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG 2 n D BMA 3 D 3 BMA D 3 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 41 A CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 96 A CYS 96 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf3 B SG CYS 36 B CYS 36 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 96 B CYS 96 1_555 B SG CYS 164 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 A ND2 ASN 8 A ASN 8 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 B ND2 ASN 8 B ASN 8 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B ND2 ASN 102 B ASN 102 1_555 F C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 231 n n C1 O1B LMR sing 232 n n C1 C2 LMR sing 233 n n C2 O2 LMR sing 234 n n C2 C3 LMR sing 235 n n C3 C4 LMR sing 236 n n C4 O4A LMR sing 237 n n C4 O4B LMR doub 238 n n C2 H2 LMR sing 239 n n O2 HO2 LMR sing 240 n n C3 H3 LMR sing 241 n n C3 H3A LMR sing 242 n n O1B H4 LMR sing 243 n n O4A H5 LMR sing 244 n n # _atom_sites.entry_id 8TLZ _atom_sites.fract_transf_matrix[1][1] 0.007823 _atom_sites.fract_transf_matrix[1][2] 0.004517 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009034 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 LMR A 1 201 1 LMR LMR . F 4 NAG B 1 201 5 NAG NAG . G 5 GOL B 1 202 1 GOL GOL . H 3 LMR B 1 203 2 LMR LMR . I 6 HOH A 1 301 31 HOH HOH . I 6 HOH A 2 302 54 HOH HOH . I 6 HOH A 3 303 77 HOH HOH . I 6 HOH A 4 304 30 HOH HOH . I 6 HOH A 5 305 64 HOH HOH . I 6 HOH A 6 306 83 HOH HOH . I 6 HOH A 7 307 61 HOH HOH . I 6 HOH A 8 308 45 HOH HOH . I 6 HOH A 9 309 57 HOH HOH . I 6 HOH A 10 310 32 HOH HOH . I 6 HOH A 11 311 29 HOH HOH . I 6 HOH A 12 312 1 HOH HOH . I 6 HOH A 13 313 40 HOH HOH . I 6 HOH A 14 314 56 HOH HOH . I 6 HOH A 15 315 52 HOH HOH . I 6 HOH A 16 316 12 HOH HOH . I 6 HOH A 17 317 6 HOH HOH . I 6 HOH A 18 318 78 HOH HOH . I 6 HOH A 19 319 80 HOH HOH . I 6 HOH A 20 320 39 HOH HOH . I 6 HOH A 21 321 36 HOH HOH . I 6 HOH A 22 322 38 HOH HOH . J 6 HOH B 1 301 34 HOH HOH . J 6 HOH B 2 302 84 HOH HOH . J 6 HOH B 3 303 33 HOH HOH . J 6 HOH B 4 304 72 HOH HOH . J 6 HOH B 5 305 43 HOH HOH . J 6 HOH B 6 306 69 HOH HOH . J 6 HOH B 7 307 62 HOH HOH . J 6 HOH B 8 308 42 HOH HOH . J 6 HOH B 9 309 7 HOH HOH . J 6 HOH B 10 310 47 HOH HOH . J 6 HOH B 11 311 66 HOH HOH . J 6 HOH B 12 312 14 HOH HOH . J 6 HOH B 13 313 79 HOH HOH . J 6 HOH B 14 314 50 HOH HOH . J 6 HOH B 15 315 51 HOH HOH . J 6 HOH B 16 316 67 HOH HOH . J 6 HOH B 17 317 70 HOH HOH . J 6 HOH B 18 318 85 HOH HOH . J 6 HOH B 19 319 87 HOH HOH . J 6 HOH B 20 320 76 HOH HOH . J 6 HOH B 21 321 86 HOH HOH . J 6 HOH B 22 322 74 HOH HOH . J 6 HOH B 23 323 65 HOH HOH . J 6 HOH B 24 324 71 HOH HOH . J 6 HOH B 25 325 75 HOH HOH . J 6 HOH B 26 326 81 HOH HOH . J 6 HOH B 27 327 82 HOH HOH . J 6 HOH B 28 328 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . H 3 -44.308 10.515 23.987 1 94.83 ? C1 LMR 203 B 1 HETATM 2 O O1A LMR . . . H 3 -45.429 10.074 23.662 1 96.27 ? O1A LMR 203 B 1 HETATM 3 O O1B LMR . . . H 3 -43.8 10.317 25.114 1 99.11 ? O1B LMR 203 B 1 HETATM 4 C C2 LMR . . . H 3 -43.549 11.297 22.959 1 92.7 ? C2 LMR 203 B 1 HETATM 5 O O2 LMR . . . H 3 -42.673 12.248 23.575 1 91.01 ? O2 LMR 203 B 1 HETATM 6 C C3 LMR . . . H 3 -42.742 10.309 22.128 1 93.71 ? C3 LMR 203 B 1 HETATM 7 C C4 LMR . . . H 3 -42.124 10.99 20.931 1 95.64 ? C4 LMR 203 B 1 HETATM 8 O O4A LMR . . . H 3 -40.884 10.935 20.798 1 97.83 ? O4A LMR 203 B 1 HETATM 9 O O4B LMR . . . H 3 -42.868 11.576 20.115 1 97.78 ? O4B LMR 203 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 9 #