data_8TNN # _model_server_result.job_id 9rBy5JkbLLBArLwlM9-K0g _model_server_result.datetime_utc '2024-10-26 02:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":201}' # _entry.id 8TNN # _exptl.entry_id 8TNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TNN _cell.length_a 88.75 _cell.length_b 138.96 _cell.length_c 316.264 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,K,M,N,O,P,Q 1 1 D,E,F,I,J,L,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N ? 7 R N N ? 7 S N N ? 7 T N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n K NAG 1 L 1 NAG L 1 NAG 6 n K NAG 2 L 2 NAG L 2 NAG 6 n K BMA 3 L 3 BMA L 3 BMA 6 n L NAG 1 T 1 NAG T 1 NAG 6 n L NAG 2 T 2 NAG T 2 NAG 6 n L BMA 3 T 3 BMA T 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 120 1_555 A SG CYS 296 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 262 A CYS 278 1_555 A SG CYS 319 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 438 A CYS 454 1_555 A SG CYS 462 A CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 518 A CYS 534 1_555 A SG CYS 571 A CYS 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 596 A CYS 612 1_555 A SG CYS 599 A CYS 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 5 B CYS 28 1_555 B SG CYS 33 B CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 6 B CYS 29 1_555 B SG CYS 56 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 67 C CYS 99 1_555 C SG CYS 106 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 C SG CYS 70 C CYS 102 1_555 C SG CYS 83 C CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 C SG CYS 96 C CYS 128 1_555 C SG CYS 182 C CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf11 C SG CYS 100 C CYS 132 1_555 C SG CYS 184 C CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 C SG CYS 160 C CYS 192 1_555 C SG CYS 176 C CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 D SG CYS 104 D CYS 120 1_555 D SG CYS 296 D CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 D SG CYS 262 D CYS 278 1_555 D SG CYS 319 D CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 D SG CYS 438 D CYS 454 1_555 D SG CYS 462 D CYS 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 E SG CYS 5 E CYS 28 1_555 E SG CYS 33 E CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 E SG CYS 6 E CYS 29 1_555 E SG CYS 56 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf18 F SG CYS 67 F CYS 99 1_555 F SG CYS 106 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf19 F SG CYS 70 F CYS 102 1_555 F SG CYS 83 F CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 F SG CYS 96 F CYS 128 1_555 F SG CYS 182 F CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf21 F SG CYS 100 F CYS 132 1_555 F SG CYS 184 F CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf22 F SG CYS 160 F CYS 192 1_555 F SG CYS 176 F CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf23 G SG CYS 23 G CYS 21 1_555 G SG CYS 88 G CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 G SG CYS 135 G CYS 133 1_555 G SG CYS 194 G CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf25 H SG CYS 24 H CYS 22 1_555 H SG CYS 101 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf26 H SG CYS 149 H CYS 147 1_555 H SG CYS 205 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf27 I SG CYS 23 I CYS 21 1_555 I SG CYS 88 I CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 J SG CYS 24 J CYS 22 1_555 J SG CYS 101 J CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf29 J SG CYS 149 J CYS 147 1_555 J SG CYS 205 J CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 44 A ASN 60 1_555 K C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 533 A ASN 549 1_555 M C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 21 B ASN 44 1_555 N C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 30 B ASN 53 1_555 O C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C ND2 ASN 61 C ASN 93 1_555 Q C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 C ND2 ASN 141 C ASN 173 1_555 P C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 D ND2 ASN 44 D ASN 60 1_555 L C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale8 D ND2 ASN 533 D ASN 549 1_555 R C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 E ND2 ASN 21 E ASN 44 1_555 T C1 NAG . E NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale10 E ND2 ASN 30 E ASN 53 1_555 S C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 K O4 NAG . L NAG 1 1_555 K C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 K O4 NAG . L NAG 2 1_555 K C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 L O4 NAG . T NAG 1 1_555 L C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 L O4 NAG . T NAG 2 1_555 L C1 BMA . T BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 259 n n C1 O1 NAG sing 260 n n C1 O5 NAG sing 261 n n C1 H1 NAG sing 262 n n C2 C3 NAG sing 263 n n C2 N2 NAG sing 264 n n C2 H2 NAG sing 265 n n C3 C4 NAG sing 266 n n C3 O3 NAG sing 267 n n C3 H3 NAG sing 268 n n C4 C5 NAG sing 269 n n C4 O4 NAG sing 270 n n C4 H4 NAG sing 271 n n C5 C6 NAG sing 272 n n C5 O5 NAG sing 273 n n C5 H5 NAG sing 274 n n C6 O6 NAG sing 275 n n C6 H61 NAG sing 276 n n C6 H62 NAG sing 277 n n C7 C8 NAG sing 278 n n C7 N2 NAG sing 279 n n C7 O7 NAG doub 280 n n C8 H81 NAG sing 281 n n C8 H82 NAG sing 282 n n C8 H83 NAG sing 283 n n N2 HN2 NAG sing 284 n n O1 HO1 NAG sing 285 n n O3 HO3 NAG sing 286 n n O4 HO4 NAG sing 287 n n O6 HO6 NAG sing 288 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8TNN _atom_sites.fract_transf_matrix[1][1] 0.011268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 NAG A 1 701 701 NAG NAG . N 7 NAG B 1 201 201 NAG NAG . O 7 NAG B 1 202 202 NAG NAG . P 7 NAG C 1 301 301 NAG NAG . Q 7 NAG C 1 302 302 NAG NAG . R 7 NAG D 1 701 701 NAG NAG . S 7 NAG E 1 201 201 NAG NAG . T 7 NAG E 1 202 202 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . S 7 19.065 -70.468 57.09 1 212.7 ? C1 NAG 201 E 1 HETATM 2 C C2 NAG . . . S 7 20.461 -70.013 56.645 1 211.9 ? C2 NAG 201 E 1 HETATM 3 C C3 NAG . . . S 7 20.391 -68.973 55.514 1 220.09 ? C3 NAG 201 E 1 HETATM 4 C C4 NAG . . . S 7 19.186 -68.041 55.614 1 223.49 ? C4 NAG 201 E 1 HETATM 5 C C5 NAG . . . S 7 17.91 -68.764 56.035 1 218.83 ? C5 NAG 201 E 1 HETATM 6 C C6 NAG . . . S 7 16.756 -68.535 55.086 1 210.07 ? C6 NAG 201 E 1 HETATM 7 C C7 NAG . . . S 7 22.197 -70.18 58.374 1 209.97 ? C7 NAG 201 E 1 HETATM 8 C C8 NAG . . . S 7 22.864 -69.498 59.531 1 209.66 ? C8 NAG 201 E 1 HETATM 9 N N2 NAG . . . S 7 21.218 -69.494 57.774 1 204.83 ? N2 NAG 201 E 1 HETATM 10 O O3 NAG . . . S 7 20.381 -69.649 54.262 1 227.54 ? O3 NAG 201 E 1 HETATM 11 O O4 NAG . . . S 7 19.453 -67 56.548 1 225.93 ? O4 NAG 201 E 1 HETATM 12 O O5 NAG . . . S 7 18.135 -70.177 56.091 1 217.71 ? O5 NAG 201 E 1 HETATM 13 O O6 NAG . . . S 7 17.158 -68.669 53.73 1 201.94 ? O6 NAG 201 E 1 HETATM 14 O O7 NAG . . . S 7 22.531 -71.299 57.999 1 210.56 ? O7 NAG 201 E 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #