data_8TNR # _model_server_result.job_id 3i2lRd0kUXWhgqqYF8eeUQ _model_server_result.datetime_utc '2025-04-16 20:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 8TNR # _exptl.entry_id 8TNR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 343.334 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(3S)-2,6-dioxopiperidin-3-yl]-5-(morpholin-4-yl)-1H-isoindole-1,3(2H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TNR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 366 B CYS 323 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 B SG CYS 369 B CYS 326 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 B SG CYS 434 B CYS 391 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 B SG CYS 437 B CYS 394 1_555 D ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 C SG CYS 424 C CYS 19 1_555 F ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 C SG CYS 427 C CYS 22 1_555 F ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 C NE2 HIS 440 C HIS 35 1_555 F ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 C NE2 HIS 444 C HIS 39 1_555 F ZN ZN . C ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C17 H17 N3 O5' _chem_comp.formula_weight 343.334 _chem_comp.id MIQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(3S)-2,6-dioxopiperidin-3-yl]-5-(morpholin-4-yl)-1H-isoindole-1,3(2H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 MIQ sing 235 n n C10 O9 MIQ sing 236 n n C11 N6 MIQ sing 237 n n C12 C13 MIQ doub 238 n y C12 C5 MIQ sing 239 n y C13 C14 MIQ sing 240 n y C14 C15 MIQ sing 241 n n C14 C3 MIQ doub 242 n y C15 N17 MIQ sing 243 n n C15 O16 MIQ doub 244 n n C18 C19 MIQ sing 245 n n C18 C23 MIQ sing 246 n n C18 N17 MIQ sing 247 n n C19 N20 MIQ sing 248 n n C19 O25 MIQ doub 249 n n C2 C3 MIQ sing 250 n n C2 N17 MIQ sing 251 n n C2 O1 MIQ doub 252 n n C21 C22 MIQ sing 253 n n C21 N20 MIQ sing 254 n n C21 O24 MIQ doub 255 n n C22 C23 MIQ sing 256 n n C3 C4 MIQ sing 257 n y C4 C5 MIQ doub 258 n y C5 N6 MIQ sing 259 n n C7 C8 MIQ sing 260 n n C7 N6 MIQ sing 261 n n C8 O9 MIQ sing 262 n n C4 H12 MIQ sing 263 n n C7 H02 MIQ sing 264 n n C7 H01 MIQ sing 265 n n C8 H03 MIQ sing 266 n n C8 H04 MIQ sing 267 n n C10 H06 MIQ sing 268 n n C10 H05 MIQ sing 269 n n C11 H08 MIQ sing 270 n n C11 H07 MIQ sing 271 n n C12 H09 MIQ sing 272 n n C13 H10 MIQ sing 273 n n C18 H11 MIQ sing 274 n n C22 H14 MIQ sing 275 n n C22 H15 MIQ sing 276 n n C23 H16 MIQ sing 277 n n C23 H17 MIQ sing 278 n n N20 H13 MIQ sing 279 n n # _atom_sites.entry_id 8TNR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN B 1 501 501 ZN ZN . E 5 MIQ B 1 502 502 MIQ RBA . F 4 ZN C 1 101 101 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MIQ . . . E 5 142.976 154.531 90.856 1 119.45 ? O1 MIQ 502 B 1 HETATM 2 C C2 MIQ . . . E 5 142.312 153.323 90.634 1 119.38 ? C2 MIQ 502 B 1 HETATM 3 C C3 MIQ . . . E 5 141.55 152.933 89.329 1 121.15 ? C3 MIQ 502 B 1 HETATM 4 C C4 MIQ . . . E 5 141.303 153.627 88.039 1 121.57 ? C4 MIQ 502 B 1 HETATM 5 C C5 MIQ . . . E 5 140.557 152.988 87.025 1 123.46 ? C5 MIQ 502 B 1 HETATM 6 C C7 MIQ . . . E 5 139.041 154.332 85.551 1 126.26 ? C7 MIQ 502 B 1 HETATM 7 C C8 MIQ . . . E 5 138.978 154.863 84.126 1 125.28 ? C8 MIQ 502 B 1 HETATM 8 C C10 MIQ . . . E 5 141.327 155.23 84.257 1 124.84 ? C10 MIQ 502 B 1 HETATM 9 C C11 MIQ . . . E 5 141.364 153.79 84.769 1 123.92 ? C11 MIQ 502 B 1 HETATM 10 C C12 MIQ . . . E 5 140.021 151.656 87.231 1 122.69 ? C12 MIQ 502 B 1 HETATM 11 C C13 MIQ . . . E 5 140.254 150.985 88.463 1 122.93 ? C13 MIQ 502 B 1 HETATM 12 C C14 MIQ . . . E 5 141.045 151.655 89.539 1 119.32 ? C14 MIQ 502 B 1 HETATM 13 C C15 MIQ . . . E 5 141.497 151.252 90.98 1 119.74 ? C15 MIQ 502 B 1 HETATM 14 C C18 MIQ . . . E 5 142.76 152.241 92.794 1 121.81 ? C18 MIQ 502 B 1 HETATM 15 C C19 MIQ . . . E 5 142.849 153.658 93.379 1 120.24 ? C19 MIQ 502 B 1 HETATM 16 C C21 MIQ . . . E 5 145.137 153.257 94.296 1 118.35 ? C21 MIQ 502 B 1 HETATM 17 C C22 MIQ . . . E 5 145.374 152.146 93.288 1 121.33 ? C22 MIQ 502 B 1 HETATM 18 C C23 MIQ . . . E 5 144.104 151.514 92.733 1 122.47 ? C23 MIQ 502 B 1 HETATM 19 N N17 MIQ . . . E 5 142.188 152.283 91.452 1 120.56 ? N17 MIQ 502 B 1 HETATM 20 N N20 MIQ . . . E 5 144.006 154.134 94.107 1 113.99 ? N20 MIQ 502 B 1 HETATM 21 N N6 MIQ . . . E 5 140.324 153.693 85.781 1 128.63 ? N6 MIQ 502 B 1 HETATM 22 O O16 MIQ . . . E 5 141.224 150.049 91.634 1 119.89 ? O16 MIQ 502 B 1 HETATM 23 O O24 MIQ . . . E 5 145.87 153.41 95.209 1 122.54 ? O24 MIQ 502 B 1 HETATM 24 O O25 MIQ . . . E 5 141.935 154.395 93.24 1 132.53 ? O25 MIQ 502 B 1 HETATM 25 O O9 MIQ . . . E 5 140.089 155.602 83.726 1 128.91 ? O9 MIQ 502 B 1 HETATM 26 H H12 MIQ . . . E 5 141.695 154.624 87.878 1 123.66 ? H12 MIQ 502 B 1 HETATM 27 H H02 MIQ . . . E 5 138.246 153.61 85.704 1 124.29 ? H02 MIQ 502 B 1 HETATM 28 H H01 MIQ . . . E 5 138.924 155.158 86.245 1 123.64 ? H01 MIQ 502 B 1 HETATM 29 H H03 MIQ . . . E 5 138.096 155.487 84.03 1 123.28 ? H03 MIQ 502 B 1 HETATM 30 H H04 MIQ . . . E 5 138.86 154.023 83.45 1 124.06 ? H04 MIQ 502 B 1 HETATM 31 H H06 MIQ . . . E 5 142.084 155.344 83.488 1 123.68 ? H06 MIQ 502 B 1 HETATM 32 H H05 MIQ . . . E 5 141.561 155.893 85.083 1 123.73 ? H05 MIQ 502 B 1 HETATM 33 H H08 MIQ . . . E 5 142.331 153.561 85.203 1 123.41 ? H08 MIQ 502 B 1 HETATM 34 H H07 MIQ . . . E 5 141.169 153.094 83.961 1 123.46 ? H07 MIQ 502 B 1 HETATM 35 H H09 MIQ . . . E 5 139.448 151.174 86.449 1 123.3 ? H09 MIQ 502 B 1 HETATM 36 H H10 MIQ . . . E 5 139.859 149.989 88.621 1 124.4 ? H10 MIQ 502 B 1 HETATM 37 H H11 MIQ . . . E 5 142.098 151.661 93.425 1 124.22 ? H11 MIQ 502 B 1 HETATM 38 H H14 MIQ . . . E 5 145.984 151.377 93.749 1 124.16 ? H14 MIQ 502 B 1 HETATM 39 H H15 MIQ . . . E 5 145.938 152.556 92.465 1 123.77 ? H15 MIQ 502 B 1 HETATM 40 H H16 MIQ . . . E 5 144.297 151.287 91.69 1 124.1 ? H16 MIQ 502 B 1 HETATM 41 H H17 MIQ . . . E 5 143.978 150.566 93.244 1 124.26 ? H17 MIQ 502 B 1 HETATM 42 H H13 MIQ . . . E 5 144.023 155.065 94.475 1 123.76 ? H13 MIQ 502 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #