data_8TO3
#
_model_server_result.job_id            GX9PKfKIAJ-skT4qqVi7lw 
_model_server_result.datetime_utc      '2024-11-16 07:49:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8to3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1102}' 
#
_entry.id    8TO3 
#
_exptl.entry_id    8TO3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.6 
_cell.angle_gamma         90 
_cell.entry_id            8TO3 
_cell.length_a            56.999 
_cell.length_b            73.369 
_cell.length_c            150.591 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,L 1 1 
B,G,M 2 1 
C,H,I,N 3 1 
D,J,K,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 148 D ASN 842 1_555 E MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 A OD2 ASP 161 D ASP 855 1_555 E MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc3 E MG MG . D MG 1101 1_555 F O1G ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc4 E MG MG . D MG 1101 1_555 F O1B ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc5 E MG MG . D MG 1101 1_555 F O2A ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc6 C OD1 ASN 148 B ASN 842 1_555 H MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc7 C OD2 ASP 161 B ASP 855 1_555 H MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 H MG MG . B MG 1101 1_555 I O1B ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc9 H MG MG . B MG 1101 1_555 I O1A ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc10 H MG MG . B MG 1101 1_555 I O2G ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc11 D OD1 ASN 148 C ASN 842 1_555 J MG MG . C MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc12 D OD2 ASP 161 C ASP 855 1_555 J MG MG . C MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc13 J MG MG . C MG 1101 1_555 K O1G ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc14 J MG MG . C MG 1101 1_555 K O1B ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc15 J MG MG . C MG 1101 1_555 K O1A ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8TO3 
_atom_sites.fract_transf_matrix[1][1]    0.017544 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002967 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG D 1 1101 1 MG MG . 
F 3 ANP D 1 1102 1101 ANP ANP . 
G 4 IXC A 1 1101 1101 IXC LIG . 
H 2 MG B 1 1101 2 MG MG . 
I 3 ANP B 1 1102 1101 ANP ANP . 
J 2 MG C 1 1101 3 MG MG . 
K 3 ANP C 1 1102 1101 ANP ANP . 
L 5 HOH D 1 1201 155 HOH HOH . 
L 5 HOH D 2 1202 165 HOH HOH . 
L 5 HOH D 3 1203 96 HOH HOH . 
L 5 HOH D 4 1204 105 HOH HOH . 
L 5 HOH D 5 1205 157 HOH HOH . 
L 5 HOH D 6 1206 159 HOH HOH . 
L 5 HOH D 7 1207 5 HOH HOH . 
L 5 HOH D 8 1208 74 HOH HOH . 
L 5 HOH D 9 1209 3 HOH HOH . 
L 5 HOH D 10 1210 24 HOH HOH . 
L 5 HOH D 11 1211 168 HOH HOH . 
L 5 HOH D 12 1212 35 HOH HOH . 
L 5 HOH D 13 1213 167 HOH HOH . 
L 5 HOH D 14 1214 12 HOH HOH . 
L 5 HOH D 15 1215 140 HOH HOH . 
L 5 HOH D 16 1216 110 HOH HOH . 
L 5 HOH D 17 1217 95 HOH HOH . 
L 5 HOH D 18 1218 70 HOH HOH . 
L 5 HOH D 19 1219 76 HOH HOH . 
L 5 HOH D 20 1220 130 HOH HOH . 
L 5 HOH D 21 1221 176 HOH HOH . 
L 5 HOH D 22 1222 101 HOH HOH . 
L 5 HOH D 23 1223 54 HOH HOH . 
L 5 HOH D 24 1224 46 HOH HOH . 
L 5 HOH D 25 1225 128 HOH HOH . 
L 5 HOH D 26 1226 177 HOH HOH . 
L 5 HOH D 27 1227 141 HOH HOH . 
L 5 HOH D 28 1228 136 HOH HOH . 
L 5 HOH D 29 1229 91 HOH HOH . 
L 5 HOH D 30 1230 81 HOH HOH . 
L 5 HOH D 31 1231 166 HOH HOH . 
L 5 HOH D 32 1232 98 HOH HOH . 
M 5 HOH A 1 1201 161 HOH HOH . 
M 5 HOH A 2 1202 58 HOH HOH . 
M 5 HOH A 3 1203 2 HOH HOH . 
M 5 HOH A 4 1204 1 HOH HOH . 
M 5 HOH A 5 1205 44 HOH HOH . 
M 5 HOH A 6 1206 106 HOH HOH . 
M 5 HOH A 7 1207 19 HOH HOH . 
M 5 HOH A 8 1208 126 HOH HOH . 
M 5 HOH A 9 1209 50 HOH HOH . 
M 5 HOH A 10 1210 122 HOH HOH . 
M 5 HOH A 11 1211 29 HOH HOH . 
M 5 HOH A 12 1212 108 HOH HOH . 
M 5 HOH A 13 1213 66 HOH HOH . 
M 5 HOH A 14 1214 143 HOH HOH . 
M 5 HOH A 15 1215 172 HOH HOH . 
M 5 HOH A 16 1216 156 HOH HOH . 
M 5 HOH A 17 1217 51 HOH HOH . 
N 5 HOH B 1 1201 8 HOH HOH . 
N 5 HOH B 2 1202 162 HOH HOH . 
N 5 HOH B 3 1203 171 HOH HOH . 
N 5 HOH B 4 1204 151 HOH HOH . 
N 5 HOH B 5 1205 23 HOH HOH . 
N 5 HOH B 6 1206 170 HOH HOH . 
N 5 HOH B 7 1207 160 HOH HOH . 
N 5 HOH B 8 1208 36 HOH HOH . 
N 5 HOH B 9 1209 38 HOH HOH . 
N 5 HOH B 10 1210 55 HOH HOH . 
N 5 HOH B 11 1211 37 HOH HOH . 
N 5 HOH B 12 1212 15 HOH HOH . 
N 5 HOH B 13 1213 32 HOH HOH . 
N 5 HOH B 14 1214 27 HOH HOH . 
N 5 HOH B 15 1215 48 HOH HOH . 
N 5 HOH B 16 1216 138 HOH HOH . 
N 5 HOH B 17 1217 65 HOH HOH . 
N 5 HOH B 18 1218 174 HOH HOH . 
N 5 HOH B 19 1219 11 HOH HOH . 
N 5 HOH B 20 1220 80 HOH HOH . 
N 5 HOH B 21 1221 7 HOH HOH . 
N 5 HOH B 22 1222 82 HOH HOH . 
N 5 HOH B 23 1223 99 HOH HOH . 
N 5 HOH B 24 1224 118 HOH HOH . 
N 5 HOH B 25 1225 100 HOH HOH . 
N 5 HOH B 26 1226 93 HOH HOH . 
N 5 HOH B 27 1227 158 HOH HOH . 
O 5 HOH C 1 1201 39 HOH HOH . 
O 5 HOH C 2 1202 17 HOH HOH . 
O 5 HOH C 3 1203 42 HOH HOH . 
O 5 HOH C 4 1204 87 HOH HOH . 
O 5 HOH C 5 1205 145 HOH HOH . 
O 5 HOH C 6 1206 137 HOH HOH . 
O 5 HOH C 7 1207 34 HOH HOH . 
O 5 HOH C 8 1208 129 HOH HOH . 
O 5 HOH C 9 1209 124 HOH HOH . 
O 5 HOH C 10 1210 20 HOH HOH . 
O 5 HOH C 11 1211 64 HOH HOH . 
O 5 HOH C 12 1212 10 HOH HOH . 
O 5 HOH C 13 1213 30 HOH HOH . 
O 5 HOH C 14 1214 31 HOH HOH . 
O 5 HOH C 15 1215 75 HOH HOH . 
O 5 HOH C 16 1216 33 HOH HOH . 
O 5 HOH C 17 1217 173 HOH HOH . 
O 5 HOH C 18 1218 175 HOH HOH . 
O 5 HOH C 19 1219 150 HOH HOH . 
O 5 HOH C 20 1220 57 HOH HOH . 
O 5 HOH C 21 1221 149 HOH HOH . 
O 5 HOH C 22 1222 28 HOH HOH . 
O 5 HOH C 23 1223 169 HOH HOH . 
O 5 HOH C 24 1224 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 3 11.388 -0.072 -50.808 1 47.43 ? PG ANP 1102 D 1 
HETATM 2 O O1G ANP . . . F 3 11.967 -0.895 -51.925 1 47.57 ? O1G ANP 1102 D 1 
HETATM 3 O O2G ANP . . . F 3 12.516 0.759 -50.089 1 51.4 ? O2G ANP 1102 D 1 
HETATM 4 O O3G ANP . . . F 3 10.708 -1.046 -49.788 1 44.9 ? O3G ANP 1102 D 1 
HETATM 5 P PB ANP . . . F 3 10.244 1.457 -52.923 1 50.25 ? PB ANP 1102 D 1 
HETATM 6 O O1B ANP . . . F 3 10.129 0.24 -53.775 1 50.72 ? O1B ANP 1102 D 1 
HETATM 7 O O2B ANP . . . F 3 9.041 2.35 -53.384 1 49.42 ? O2B ANP 1102 D 1 
HETATM 8 N N3B ANP . . . F 3 10.145 0.941 -51.329 1 47.64 ? N3B ANP 1102 D 1 
HETATM 9 P PA ANP . . . F 3 12.65 1.864 -54.339 1 51.9 ? PA ANP 1102 D 1 
HETATM 10 O O1A ANP . . . F 3 13.768 2.838 -54.18 1 49.03 ? O1A ANP 1102 D 1 
HETATM 11 O O2A ANP . . . F 3 13.081 0.385 -54.196 1 48.57 ? O2A ANP 1102 D 1 
HETATM 12 O O3A ANP . . . F 3 11.592 2.234 -53.178 1 55.5 ? O3A ANP 1102 D 1 
HETATM 13 O O5' ANP . . . F 3 11.87 2.189 -55.698 1 48.46 ? O5' ANP 1102 D 1 
HETATM 14 C C5' ANP . . . F 3 11.805 3.587 -56.1 1 47.43 ? C5' ANP 1102 D 1 
HETATM 15 C C4' ANP . . . F 3 10.838 3.751 -57.241 1 46.58 ? C4' ANP 1102 D 1 
HETATM 16 O O4' ANP . . . F 3 11.455 3.275 -58.461 1 45.75 ? O4' ANP 1102 D 1 
HETATM 17 C C3' ANP . . . F 3 9.528 2.982 -57.079 1 48.12 ? C3' ANP 1102 D 1 
HETATM 18 O O3' ANP . . . F 3 8.435 3.808 -57.471 1 49.96 ? O3' ANP 1102 D 1 
HETATM 19 C C2' ANP . . . F 3 9.74 1.745 -57.961 1 46.78 ? C2' ANP 1102 D 1 
HETATM 20 O O2' ANP . . . F 3 8.555 1.237 -58.555 1 44.19 ? O2' ANP 1102 D 1 
HETATM 21 C C1' ANP . . . F 3 10.634 2.296 -59.071 1 45.16 ? C1' ANP 1102 D 1 
HETATM 22 N N9 ANP . . . F 3 11.494 1.277 -59.666 1 43.21 ? N9 ANP 1102 D 1 
HETATM 23 C C8 ANP . . . F 3 12.335 0.447 -58.982 1 42.75 ? C8 ANP 1102 D 1 
HETATM 24 N N7 ANP . . . F 3 12.991 -0.402 -59.745 1 42.14 ? N7 ANP 1102 D 1 
HETATM 25 C C5 ANP . . . F 3 12.539 -0.098 -61.018 1 42.14 ? C5 ANP 1102 D 1 
HETATM 26 C C6 ANP . . . F 3 12.856 -0.635 -62.289 1 37.16 ? C6 ANP 1102 D 1 
HETATM 27 N N6 ANP . . . F 3 13.728 -1.628 -62.46 1 38.96 ? N6 ANP 1102 D 1 
HETATM 28 N N1 ANP . . . F 3 12.223 -0.121 -63.367 1 37.63 ? N1 ANP 1102 D 1 
HETATM 29 C C2 ANP . . . F 3 11.355 0.882 -63.188 1 39.41 ? C2 ANP 1102 D 1 
HETATM 30 N N3 ANP . . . F 3 10.977 1.469 -62.046 1 42.14 ? N3 ANP 1102 D 1 
HETATM 31 C C4 ANP . . . F 3 11.607 0.928 -61.001 1 44.26 ? C4 ANP 1102 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    105 
_model_server_stats.query_time_ms           540 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#