data_8TO3
#
_model_server_result.job_id            u0mqjDuqKYkWi2jt5efetg 
_model_server_result.datetime_utc      '2024-11-16 07:25:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8to3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1102}' 
#
_entry.id    8TO3 
#
_exptl.entry_id    8TO3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.6 
_cell.angle_gamma         90 
_cell.entry_id            8TO3 
_cell.length_a            56.999 
_cell.length_b            73.369 
_cell.length_c            150.591 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,L 1 1 
B,G,M 2 1 
C,H,I,N 3 1 
D,J,K,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 148 D ASN 842 1_555 E MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc2 A OD2 ASP 161 D ASP 855 1_555 E MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc3 E MG MG . D MG 1101 1_555 F O1G ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc4 E MG MG . D MG 1101 1_555 F O1B ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc5 E MG MG . D MG 1101 1_555 F O2A ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc6 C OD1 ASN 148 B ASN 842 1_555 H MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc7 C OD2 ASP 161 B ASP 855 1_555 H MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 H MG MG . B MG 1101 1_555 I O1B ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc9 H MG MG . B MG 1101 1_555 I O1A ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc10 H MG MG . B MG 1101 1_555 I O2G ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc11 D OD1 ASN 148 C ASN 842 1_555 J MG MG . C MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc12 D OD2 ASP 161 C ASP 855 1_555 J MG MG . C MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc13 J MG MG . C MG 1101 1_555 K O1G ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc14 J MG MG . C MG 1101 1_555 K O1B ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc15 J MG MG . C MG 1101 1_555 K O1A ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8TO3 
_atom_sites.fract_transf_matrix[1][1]    0.017544 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002967 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01363 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG D 1 1101 1 MG MG . 
F 3 ANP D 1 1102 1101 ANP ANP . 
G 4 IXC A 1 1101 1101 IXC LIG . 
H 2 MG B 1 1101 2 MG MG . 
I 3 ANP B 1 1102 1101 ANP ANP . 
J 2 MG C 1 1101 3 MG MG . 
K 3 ANP C 1 1102 1101 ANP ANP . 
L 5 HOH D 1 1201 155 HOH HOH . 
L 5 HOH D 2 1202 165 HOH HOH . 
L 5 HOH D 3 1203 96 HOH HOH . 
L 5 HOH D 4 1204 105 HOH HOH . 
L 5 HOH D 5 1205 157 HOH HOH . 
L 5 HOH D 6 1206 159 HOH HOH . 
L 5 HOH D 7 1207 5 HOH HOH . 
L 5 HOH D 8 1208 74 HOH HOH . 
L 5 HOH D 9 1209 3 HOH HOH . 
L 5 HOH D 10 1210 24 HOH HOH . 
L 5 HOH D 11 1211 168 HOH HOH . 
L 5 HOH D 12 1212 35 HOH HOH . 
L 5 HOH D 13 1213 167 HOH HOH . 
L 5 HOH D 14 1214 12 HOH HOH . 
L 5 HOH D 15 1215 140 HOH HOH . 
L 5 HOH D 16 1216 110 HOH HOH . 
L 5 HOH D 17 1217 95 HOH HOH . 
L 5 HOH D 18 1218 70 HOH HOH . 
L 5 HOH D 19 1219 76 HOH HOH . 
L 5 HOH D 20 1220 130 HOH HOH . 
L 5 HOH D 21 1221 176 HOH HOH . 
L 5 HOH D 22 1222 101 HOH HOH . 
L 5 HOH D 23 1223 54 HOH HOH . 
L 5 HOH D 24 1224 46 HOH HOH . 
L 5 HOH D 25 1225 128 HOH HOH . 
L 5 HOH D 26 1226 177 HOH HOH . 
L 5 HOH D 27 1227 141 HOH HOH . 
L 5 HOH D 28 1228 136 HOH HOH . 
L 5 HOH D 29 1229 91 HOH HOH . 
L 5 HOH D 30 1230 81 HOH HOH . 
L 5 HOH D 31 1231 166 HOH HOH . 
L 5 HOH D 32 1232 98 HOH HOH . 
M 5 HOH A 1 1201 161 HOH HOH . 
M 5 HOH A 2 1202 58 HOH HOH . 
M 5 HOH A 3 1203 2 HOH HOH . 
M 5 HOH A 4 1204 1 HOH HOH . 
M 5 HOH A 5 1205 44 HOH HOH . 
M 5 HOH A 6 1206 106 HOH HOH . 
M 5 HOH A 7 1207 19 HOH HOH . 
M 5 HOH A 8 1208 126 HOH HOH . 
M 5 HOH A 9 1209 50 HOH HOH . 
M 5 HOH A 10 1210 122 HOH HOH . 
M 5 HOH A 11 1211 29 HOH HOH . 
M 5 HOH A 12 1212 108 HOH HOH . 
M 5 HOH A 13 1213 66 HOH HOH . 
M 5 HOH A 14 1214 143 HOH HOH . 
M 5 HOH A 15 1215 172 HOH HOH . 
M 5 HOH A 16 1216 156 HOH HOH . 
M 5 HOH A 17 1217 51 HOH HOH . 
N 5 HOH B 1 1201 8 HOH HOH . 
N 5 HOH B 2 1202 162 HOH HOH . 
N 5 HOH B 3 1203 171 HOH HOH . 
N 5 HOH B 4 1204 151 HOH HOH . 
N 5 HOH B 5 1205 23 HOH HOH . 
N 5 HOH B 6 1206 170 HOH HOH . 
N 5 HOH B 7 1207 160 HOH HOH . 
N 5 HOH B 8 1208 36 HOH HOH . 
N 5 HOH B 9 1209 38 HOH HOH . 
N 5 HOH B 10 1210 55 HOH HOH . 
N 5 HOH B 11 1211 37 HOH HOH . 
N 5 HOH B 12 1212 15 HOH HOH . 
N 5 HOH B 13 1213 32 HOH HOH . 
N 5 HOH B 14 1214 27 HOH HOH . 
N 5 HOH B 15 1215 48 HOH HOH . 
N 5 HOH B 16 1216 138 HOH HOH . 
N 5 HOH B 17 1217 65 HOH HOH . 
N 5 HOH B 18 1218 174 HOH HOH . 
N 5 HOH B 19 1219 11 HOH HOH . 
N 5 HOH B 20 1220 80 HOH HOH . 
N 5 HOH B 21 1221 7 HOH HOH . 
N 5 HOH B 22 1222 82 HOH HOH . 
N 5 HOH B 23 1223 99 HOH HOH . 
N 5 HOH B 24 1224 118 HOH HOH . 
N 5 HOH B 25 1225 100 HOH HOH . 
N 5 HOH B 26 1226 93 HOH HOH . 
N 5 HOH B 27 1227 158 HOH HOH . 
O 5 HOH C 1 1201 39 HOH HOH . 
O 5 HOH C 2 1202 17 HOH HOH . 
O 5 HOH C 3 1203 42 HOH HOH . 
O 5 HOH C 4 1204 87 HOH HOH . 
O 5 HOH C 5 1205 145 HOH HOH . 
O 5 HOH C 6 1206 137 HOH HOH . 
O 5 HOH C 7 1207 34 HOH HOH . 
O 5 HOH C 8 1208 129 HOH HOH . 
O 5 HOH C 9 1209 124 HOH HOH . 
O 5 HOH C 10 1210 20 HOH HOH . 
O 5 HOH C 11 1211 64 HOH HOH . 
O 5 HOH C 12 1212 10 HOH HOH . 
O 5 HOH C 13 1213 30 HOH HOH . 
O 5 HOH C 14 1214 31 HOH HOH . 
O 5 HOH C 15 1215 75 HOH HOH . 
O 5 HOH C 16 1216 33 HOH HOH . 
O 5 HOH C 17 1217 173 HOH HOH . 
O 5 HOH C 18 1218 175 HOH HOH . 
O 5 HOH C 19 1219 150 HOH HOH . 
O 5 HOH C 20 1220 57 HOH HOH . 
O 5 HOH C 21 1221 149 HOH HOH . 
O 5 HOH C 22 1222 28 HOH HOH . 
O 5 HOH C 23 1223 169 HOH HOH . 
O 5 HOH C 24 1224 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . I 3 8.785 -39.213 -49.086 1 63.52 ? PG ANP 1102 B 1 
HETATM 2 O O1G ANP . . . I 3 8.132 -40.277 -48.27 1 53.41 ? O1G ANP 1102 B 1 
HETATM 3 O O2G ANP . . . I 3 9.456 -39.821 -50.382 1 64.2 ? O2G ANP 1102 B 1 
HETATM 4 O O3G ANP . . . I 3 9.874 -38.523 -48.181 1 62.1 ? O3G ANP 1102 B 1 
HETATM 5 P PB ANP . . . I 3 7.611 -37.432 -51.045 1 60.41 ? PB ANP 1102 B 1 
HETATM 6 O O1B ANP . . . I 3 7.578 -38.488 -52.084 1 57.7 ? O1B ANP 1102 B 1 
HETATM 7 O O2B ANP . . . I 3 6.285 -36.642 -51.283 1 57.33 ? O2B ANP 1102 B 1 
HETATM 8 N N3B ANP . . . I 3 7.561 -38.128 -49.509 1 57.06 ? N3B ANP 1102 B 1 
HETATM 9 P PA ANP . . . I 3 10.034 -36.74 -52.392 1 60.93 ? PA ANP 1102 B 1 
HETATM 10 O O1A ANP . . . I 3 10.304 -38.188 -52.593 1 60.82 ? O1A ANP 1102 B 1 
HETATM 11 O O2A ANP . . . I 3 11.289 -35.983 -51.915 1 57.82 ? O2A ANP 1102 B 1 
HETATM 12 O O3A ANP . . . I 3 8.87 -36.492 -51.276 1 64.74 ? O3A ANP 1102 B 1 
HETATM 13 O O5' ANP . . . I 3 9.496 -36.16 -53.776 1 57.16 ? O5' ANP 1102 B 1 
HETATM 14 C C5' ANP . . . I 3 8.771 -34.925 -53.776 1 56 ? C5' ANP 1102 B 1 
HETATM 15 C C4' ANP . . . I 3 8.137 -34.747 -55.124 1 55.03 ? C4' ANP 1102 B 1 
HETATM 16 O O4' ANP . . . I 3 9.045 -35.225 -56.142 1 56.29 ? O4' ANP 1102 B 1 
HETATM 17 C C3' ANP . . . I 3 6.813 -35.491 -55.343 1 56.76 ? C3' ANP 1102 B 1 
HETATM 18 O O3' ANP . . . I 3 5.893 -34.642 -56.02 1 55.38 ? O3' ANP 1102 B 1 
HETATM 19 C C2' ANP . . . I 3 7.208 -36.654 -56.256 1 53.09 ? C2' ANP 1102 B 1 
HETATM 20 O O2' ANP . . . I 3 6.127 -37.024 -57.102 1 49.34 ? O2' ANP 1102 B 1 
HETATM 21 C C1' ANP . . . I 3 8.306 -35.991 -57.077 1 55.94 ? C1' ANP 1102 B 1 
HETATM 22 N N9 ANP . . . I 3 9.204 -36.912 -57.778 1 50.62 ? N9 ANP 1102 B 1 
HETATM 23 C C8 ANP . . . I 3 10.085 -37.8 -57.214 1 50.12 ? C8 ANP 1102 B 1 
HETATM 24 N N7 ANP . . . I 3 10.769 -38.492 -58.096 1 48.37 ? N7 ANP 1102 B 1 
HETATM 25 C C5 ANP . . . I 3 10.31 -38.023 -59.322 1 48.25 ? C5 ANP 1102 B 1 
HETATM 26 C C6 ANP . . . I 3 10.629 -38.354 -60.655 1 44.2 ? C6 ANP 1102 B 1 
HETATM 27 N N6 ANP . . . I 3 11.534 -39.278 -60.983 1 44.03 ? N6 ANP 1102 B 1 
HETATM 28 N N1 ANP . . . I 3 9.978 -37.697 -61.644 1 43.93 ? N1 ANP 1102 B 1 
HETATM 29 C C2 ANP . . . I 3 9.068 -36.775 -61.31 1 44.39 ? C2 ANP 1102 B 1 
HETATM 30 N N3 ANP . . . I 3 8.686 -36.378 -60.095 1 48.61 ? N3 ANP 1102 B 1 
HETATM 31 C C4 ANP . . . I 3 9.343 -37.043 -59.14 1 48.93 ? C4 ANP 1102 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           31 
#