data_8TO3 # _model_server_result.job_id IOVMEmHDbW5HzeI1X9ygUA _model_server_result.datetime_utc '2024-11-16 07:19:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8to3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1102}' # _entry.id 8TO3 # _exptl.entry_id 8TO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.6 _cell.angle_gamma 90 _cell.entry_id 8TO3 _cell.length_a 56.999 _cell.length_b 73.369 _cell.length_c 150.591 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,L 1 1 B,G,M 2 1 C,H,I,N 3 1 D,J,K,O 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 148 D ASN 842 1_555 E MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 A OD2 ASP 161 D ASP 855 1_555 E MG MG . D MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc3 E MG MG . D MG 1101 1_555 F O1G ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 E MG MG . D MG 1101 1_555 F O1B ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 E MG MG . D MG 1101 1_555 F O2A ANP . D ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc6 C OD1 ASN 148 B ASN 842 1_555 H MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 C OD2 ASP 161 B ASP 855 1_555 H MG MG . B MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc8 H MG MG . B MG 1101 1_555 I O1B ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc9 H MG MG . B MG 1101 1_555 I O1A ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 H MG MG . B MG 1101 1_555 I O2G ANP . B ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc11 D OD1 ASN 148 C ASN 842 1_555 J MG MG . C MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 D OD2 ASP 161 C ASP 855 1_555 J MG MG . C MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc13 J MG MG . C MG 1101 1_555 K O1G ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc14 J MG MG . C MG 1101 1_555 K O1B ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc15 J MG MG . C MG 1101 1_555 K O1A ANP . C ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8TO3 _atom_sites.fract_transf_matrix[1][1] 0.017544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002967 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006735 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG D 1 1101 1 MG MG . F 3 ANP D 1 1102 1101 ANP ANP . G 4 IXC A 1 1101 1101 IXC LIG . H 2 MG B 1 1101 2 MG MG . I 3 ANP B 1 1102 1101 ANP ANP . J 2 MG C 1 1101 3 MG MG . K 3 ANP C 1 1102 1101 ANP ANP . L 5 HOH D 1 1201 155 HOH HOH . L 5 HOH D 2 1202 165 HOH HOH . L 5 HOH D 3 1203 96 HOH HOH . L 5 HOH D 4 1204 105 HOH HOH . L 5 HOH D 5 1205 157 HOH HOH . L 5 HOH D 6 1206 159 HOH HOH . L 5 HOH D 7 1207 5 HOH HOH . L 5 HOH D 8 1208 74 HOH HOH . L 5 HOH D 9 1209 3 HOH HOH . L 5 HOH D 10 1210 24 HOH HOH . L 5 HOH D 11 1211 168 HOH HOH . L 5 HOH D 12 1212 35 HOH HOH . L 5 HOH D 13 1213 167 HOH HOH . L 5 HOH D 14 1214 12 HOH HOH . L 5 HOH D 15 1215 140 HOH HOH . L 5 HOH D 16 1216 110 HOH HOH . L 5 HOH D 17 1217 95 HOH HOH . L 5 HOH D 18 1218 70 HOH HOH . L 5 HOH D 19 1219 76 HOH HOH . L 5 HOH D 20 1220 130 HOH HOH . L 5 HOH D 21 1221 176 HOH HOH . L 5 HOH D 22 1222 101 HOH HOH . L 5 HOH D 23 1223 54 HOH HOH . L 5 HOH D 24 1224 46 HOH HOH . L 5 HOH D 25 1225 128 HOH HOH . L 5 HOH D 26 1226 177 HOH HOH . L 5 HOH D 27 1227 141 HOH HOH . L 5 HOH D 28 1228 136 HOH HOH . L 5 HOH D 29 1229 91 HOH HOH . L 5 HOH D 30 1230 81 HOH HOH . L 5 HOH D 31 1231 166 HOH HOH . L 5 HOH D 32 1232 98 HOH HOH . M 5 HOH A 1 1201 161 HOH HOH . M 5 HOH A 2 1202 58 HOH HOH . M 5 HOH A 3 1203 2 HOH HOH . M 5 HOH A 4 1204 1 HOH HOH . M 5 HOH A 5 1205 44 HOH HOH . M 5 HOH A 6 1206 106 HOH HOH . M 5 HOH A 7 1207 19 HOH HOH . M 5 HOH A 8 1208 126 HOH HOH . M 5 HOH A 9 1209 50 HOH HOH . M 5 HOH A 10 1210 122 HOH HOH . M 5 HOH A 11 1211 29 HOH HOH . M 5 HOH A 12 1212 108 HOH HOH . M 5 HOH A 13 1213 66 HOH HOH . M 5 HOH A 14 1214 143 HOH HOH . M 5 HOH A 15 1215 172 HOH HOH . M 5 HOH A 16 1216 156 HOH HOH . M 5 HOH A 17 1217 51 HOH HOH . N 5 HOH B 1 1201 8 HOH HOH . N 5 HOH B 2 1202 162 HOH HOH . N 5 HOH B 3 1203 171 HOH HOH . N 5 HOH B 4 1204 151 HOH HOH . N 5 HOH B 5 1205 23 HOH HOH . N 5 HOH B 6 1206 170 HOH HOH . N 5 HOH B 7 1207 160 HOH HOH . N 5 HOH B 8 1208 36 HOH HOH . N 5 HOH B 9 1209 38 HOH HOH . N 5 HOH B 10 1210 55 HOH HOH . N 5 HOH B 11 1211 37 HOH HOH . N 5 HOH B 12 1212 15 HOH HOH . N 5 HOH B 13 1213 32 HOH HOH . N 5 HOH B 14 1214 27 HOH HOH . N 5 HOH B 15 1215 48 HOH HOH . N 5 HOH B 16 1216 138 HOH HOH . N 5 HOH B 17 1217 65 HOH HOH . N 5 HOH B 18 1218 174 HOH HOH . N 5 HOH B 19 1219 11 HOH HOH . N 5 HOH B 20 1220 80 HOH HOH . N 5 HOH B 21 1221 7 HOH HOH . N 5 HOH B 22 1222 82 HOH HOH . N 5 HOH B 23 1223 99 HOH HOH . N 5 HOH B 24 1224 118 HOH HOH . N 5 HOH B 25 1225 100 HOH HOH . N 5 HOH B 26 1226 93 HOH HOH . N 5 HOH B 27 1227 158 HOH HOH . O 5 HOH C 1 1201 39 HOH HOH . O 5 HOH C 2 1202 17 HOH HOH . O 5 HOH C 3 1203 42 HOH HOH . O 5 HOH C 4 1204 87 HOH HOH . O 5 HOH C 5 1205 145 HOH HOH . O 5 HOH C 6 1206 137 HOH HOH . O 5 HOH C 7 1207 34 HOH HOH . O 5 HOH C 8 1208 129 HOH HOH . O 5 HOH C 9 1209 124 HOH HOH . O 5 HOH C 10 1210 20 HOH HOH . O 5 HOH C 11 1211 64 HOH HOH . O 5 HOH C 12 1212 10 HOH HOH . O 5 HOH C 13 1213 30 HOH HOH . O 5 HOH C 14 1214 31 HOH HOH . O 5 HOH C 15 1215 75 HOH HOH . O 5 HOH C 16 1216 33 HOH HOH . O 5 HOH C 17 1217 173 HOH HOH . O 5 HOH C 18 1218 175 HOH HOH . O 5 HOH C 19 1219 150 HOH HOH . O 5 HOH C 20 1220 57 HOH HOH . O 5 HOH C 21 1221 149 HOH HOH . O 5 HOH C 22 1222 28 HOH HOH . O 5 HOH C 23 1223 169 HOH HOH . O 5 HOH C 24 1224 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . K 3 28.836 17.715 -25.329 1 62.74 ? PG ANP 1102 C 1 HETATM 2 O O1G ANP . . . K 3 28.362 17.125 -24.029 1 58.09 ? O1G ANP 1102 C 1 HETATM 3 O O2G ANP . . . K 3 27.686 18.605 -25.921 1 68.42 ? O2G ANP 1102 C 1 HETATM 4 O O3G ANP . . . K 3 29.174 16.574 -26.364 1 53.41 ? O3G ANP 1102 C 1 HETATM 5 P PB ANP . . . K 3 30.406 19.496 -23.653 1 60.97 ? PB ANP 1102 C 1 HETATM 6 O O1B ANP . . . K 3 30.573 18.515 -22.547 1 61.71 ? O1B ANP 1102 C 1 HETATM 7 O O2B ANP . . . K 3 31.704 20.354 -23.541 1 61.95 ? O2B ANP 1102 C 1 HETATM 8 N N3B ANP . . . K 3 30.255 18.617 -25.088 1 59.39 ? N3B ANP 1102 C 1 HETATM 9 P PA ANP . . . K 3 28.059 20.335 -22.387 1 66.35 ? PA ANP 1102 C 1 HETATM 10 O O1A ANP . . . K 3 27.904 18.961 -21.826 1 61.67 ? O1A ANP 1102 C 1 HETATM 11 O O2A ANP . . . K 3 26.793 20.893 -23.063 1 66.59 ? O2A ANP 1102 C 1 HETATM 12 O O3A ANP . . . K 3 29.158 20.44 -23.528 1 70.94 ? O3A ANP 1102 C 1 HETATM 13 O O5' ANP . . . K 3 28.6 21.278 -21.225 1 63.42 ? O5' ANP 1102 C 1 HETATM 14 C C5' ANP . . . K 3 29.538 20.766 -20.265 1 60.4 ? C5' ANP 1102 C 1 HETATM 15 C C4' ANP . . . K 3 30.271 21.91 -19.615 1 58.65 ? C4' ANP 1102 C 1 HETATM 16 O O4' ANP . . . K 3 29.788 22.048 -18.262 1 61.45 ? O4' ANP 1102 C 1 HETATM 17 C C3' ANP . . . K 3 31.757 21.641 -19.443 1 56.71 ? C3' ANP 1102 C 1 HETATM 18 O O3' ANP . . . K 3 32.48 22.846 -19.202 1 54.88 ? O3' ANP 1102 C 1 HETATM 19 C C2' ANP . . . K 3 31.75 20.698 -18.239 1 53.54 ? C2' ANP 1102 C 1 HETATM 20 O O2' ANP . . . K 3 33.009 20.724 -17.581 1 49.78 ? O2' ANP 1102 C 1 HETATM 21 C C1' ANP . . . K 3 30.633 21.316 -17.383 1 58.81 ? C1' ANP 1102 C 1 HETATM 22 N N9 ANP . . . K 3 29.822 20.359 -16.615 1 53.5 ? N9 ANP 1102 C 1 HETATM 23 C C8 ANP . . . K 3 28.928 19.442 -17.11 1 53.16 ? C8 ANP 1102 C 1 HETATM 24 N N7 ANP . . . K 3 28.351 18.72 -16.175 1 51.98 ? N7 ANP 1102 C 1 HETATM 25 C C5 ANP . . . K 3 28.894 19.196 -14.988 1 51.36 ? C5 ANP 1102 C 1 HETATM 26 C C6 ANP . . . K 3 28.707 18.852 -13.632 1 47.64 ? C6 ANP 1102 C 1 HETATM 27 N N6 ANP . . . K 3 27.873 17.891 -13.225 1 47.88 ? N6 ANP 1102 C 1 HETATM 28 N N1 ANP . . . K 3 29.415 19.53 -12.7 1 46.7 ? N1 ANP 1102 C 1 HETATM 29 C C2 ANP . . . K 3 30.253 20.487 -13.106 1 47.63 ? C2 ANP 1102 C 1 HETATM 30 N N3 ANP . . . K 3 30.525 20.893 -14.348 1 52.24 ? N3 ANP 1102 C 1 HETATM 31 C C4 ANP . . . K 3 29.811 20.213 -15.248 1 51.88 ? C4 ANP 1102 C 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 68 _model_server_stats.query_time_ms 580 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #