data_8TOL # _model_server_result.job_id kBRzfUE1bDIp0YtbPNm_0A _model_server_result.datetime_utc '2024-11-14 20:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":802}' # _entry.id 8TOL # _exptl.entry_id 8TOL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TOL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 449 A ASN 448 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A OE2 GLU 453 A GLU 452 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A OE1 GLU 453 A GLU 452 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 A OD1 ASP 504 A ASP 503 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc5 A OE1 GLU 507 A GLU 506 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc6 A OE2 GLU 507 A GLU 506 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc7 A OE2 GLU 536 A GLU 535 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 A OE1 GLU 536 A GLU 535 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc9 A OE2 GLU 536 A GLU 535 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 A OD1 ASP 540 A ASP 539 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 A OD2 ASP 540 A ASP 539 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc12 B OD1 ASN 449 B ASN 448 1_555 M CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc13 B OE2 GLU 453 B GLU 452 1_555 L CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc14 B OE1 GLU 453 B GLU 452 1_555 M CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc15 B OD1 ASP 504 B ASP 503 1_555 L CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc16 B OE1 GLU 507 B GLU 506 1_555 L CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc17 B OE2 GLU 507 B GLU 506 1_555 M CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc18 B OE2 GLU 536 B GLU 535 1_555 L CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc19 B OE1 GLU 536 B GLU 535 1_555 M CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc20 B OE2 GLU 536 B GLU 535 1_555 M CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc21 B OD1 ASP 540 B ASP 539 1_555 L CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc22 B OD2 ASP 540 B ASP 539 1_555 L CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8TOL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 801 801 CA CA . D 2 CA A 1 802 802 CA CA . E 3 PGW A 1 803 901 PGW PGW . F 3 PGW A 1 804 902 PGW PGW . G 3 PGW A 1 805 903 PGW PGW . H 3 PGW A 1 806 904 PGW PGW . I 3 PGW A 1 807 905 PGW PGW . J 3 PGW A 1 808 906 PGW PGW . K 3 PGW A 1 809 902 PGW PGW . L 2 CA B 1 801 801 CA CA . M 2 CA B 1 802 802 CA CA . N 3 PGW B 1 803 901 PGW PGW . O 3 PGW B 1 804 903 PGW PGW . P 3 PGW B 1 805 904 PGW PGW . Q 3 PGW B 1 806 905 PGW PGW . R 3 PGW B 1 807 906 PGW PGW . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 2 _atom_site.Cartn_x 120.507 _atom_site.Cartn_y 134.385 _atom_site.Cartn_z 102.022 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 96.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 802 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #