data_8TON # _model_server_result.job_id xEX8fHO1cbqq0g3UxdkyXw _model_server_result.datetime_utc '2024-10-18 05:23:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ton # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8TON # _exptl.entry_id 8TON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TON _cell.length_a 84.603 _cell.length_b 84.603 _cell.length_c 76.895 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TON _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 A SG CYS 24 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc1 A OD1 ASP 7 A ASP 7 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc2 A O LEU 8 A LEU 8 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc3 A OE1 GLU 35 A GLU 35 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 A OD1 ASP 55 A ASP 55 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 A OD2 ASP 55 A ASP 55 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc6 A OD2 ASP 57 A ASP 57 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc7 A OE1 GLN 116 A GLN 116 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc8 A OD1 ASP 134 A ASP 134 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc9 A OD1 ASN 136 A ASN 136 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 A O GLN 138 A GLN 138 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc11 A OD1 ASP 168 A ASP 168 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc12 A OD2 ASP 168 A ASP 168 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc13 A OD2 ASP 170 A ASP 170 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc14 A O ASN 174 A ASN 174 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc15 A OD2 ASP 218 A ASP 218 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc16 D K K . A K 303 1_555 E O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc17 D K K . A K 303 1_555 E O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc18 D K K . A K 303 1_555 E O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc19 D K K . A K 303 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8TON _atom_sites.fract_transf_matrix[1][1] 0.01182 _atom_sites.fract_transf_matrix[1][2] 0.006824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 NA A 1 302 1 NA NA . D 4 K A 1 303 1 K K . E 5 HOH A 1 401 184 HOH HOH . E 5 HOH A 2 402 40 HOH HOH . E 5 HOH A 3 403 155 HOH HOH . E 5 HOH A 4 404 38 HOH HOH . E 5 HOH A 5 405 119 HOH HOH . E 5 HOH A 6 406 34 HOH HOH . E 5 HOH A 7 407 98 HOH HOH . E 5 HOH A 8 408 39 HOH HOH . E 5 HOH A 9 409 41 HOH HOH . E 5 HOH A 10 410 1 HOH HOH . E 5 HOH A 11 411 136 HOH HOH . E 5 HOH A 12 412 89 HOH HOH . E 5 HOH A 13 413 5 HOH HOH . E 5 HOH A 14 414 22 HOH HOH . E 5 HOH A 15 415 16 HOH HOH . E 5 HOH A 16 416 2 HOH HOH . E 5 HOH A 17 417 26 HOH HOH . E 5 HOH A 18 418 8 HOH HOH . E 5 HOH A 19 419 96 HOH HOH . E 5 HOH A 20 420 49 HOH HOH . E 5 HOH A 21 421 72 HOH HOH . E 5 HOH A 22 422 4 HOH HOH . E 5 HOH A 23 423 24 HOH HOH . E 5 HOH A 24 424 55 HOH HOH . E 5 HOH A 25 425 33 HOH HOH . E 5 HOH A 26 426 13 HOH HOH . E 5 HOH A 27 427 149 HOH HOH . E 5 HOH A 28 428 77 HOH HOH . E 5 HOH A 29 429 31 HOH HOH . E 5 HOH A 30 430 29 HOH HOH . E 5 HOH A 31 431 54 HOH HOH . E 5 HOH A 32 432 27 HOH HOH . E 5 HOH A 33 433 103 HOH HOH . E 5 HOH A 34 434 48 HOH HOH . E 5 HOH A 35 435 94 HOH HOH . E 5 HOH A 36 436 37 HOH HOH . E 5 HOH A 37 437 90 HOH HOH . E 5 HOH A 38 438 109 HOH HOH . E 5 HOH A 39 439 56 HOH HOH . E 5 HOH A 40 440 65 HOH HOH . E 5 HOH A 41 441 147 HOH HOH . E 5 HOH A 42 442 61 HOH HOH . E 5 HOH A 43 443 62 HOH HOH . E 5 HOH A 44 444 73 HOH HOH . E 5 HOH A 45 445 23 HOH HOH . E 5 HOH A 46 446 46 HOH HOH . E 5 HOH A 47 447 20 HOH HOH . E 5 HOH A 48 448 18 HOH HOH . E 5 HOH A 49 449 42 HOH HOH . E 5 HOH A 50 450 97 HOH HOH . E 5 HOH A 51 451 66 HOH HOH . E 5 HOH A 52 452 15 HOH HOH . E 5 HOH A 53 453 118 HOH HOH . E 5 HOH A 54 454 53 HOH HOH . E 5 HOH A 55 455 173 HOH HOH . E 5 HOH A 56 456 124 HOH HOH . E 5 HOH A 57 457 176 HOH HOH . E 5 HOH A 58 458 60 HOH HOH . E 5 HOH A 59 459 30 HOH HOH . E 5 HOH A 60 460 79 HOH HOH . E 5 HOH A 61 461 183 HOH HOH . E 5 HOH A 62 462 45 HOH HOH . E 5 HOH A 63 463 131 HOH HOH . E 5 HOH A 64 464 110 HOH HOH . E 5 HOH A 65 465 64 HOH HOH . E 5 HOH A 66 466 11 HOH HOH . E 5 HOH A 67 467 180 HOH HOH . E 5 HOH A 68 468 43 HOH HOH . E 5 HOH A 69 469 165 HOH HOH . E 5 HOH A 70 470 36 HOH HOH . E 5 HOH A 71 471 134 HOH HOH . E 5 HOH A 72 472 135 HOH HOH . E 5 HOH A 73 473 17 HOH HOH . E 5 HOH A 74 474 19 HOH HOH . E 5 HOH A 75 475 50 HOH HOH . E 5 HOH A 76 476 47 HOH HOH . E 5 HOH A 77 477 114 HOH HOH . E 5 HOH A 78 478 148 HOH HOH . E 5 HOH A 79 479 6 HOH HOH . E 5 HOH A 80 480 10 HOH HOH . E 5 HOH A 81 481 78 HOH HOH . E 5 HOH A 82 482 181 HOH HOH . E 5 HOH A 83 483 132 HOH HOH . E 5 HOH A 84 484 25 HOH HOH . E 5 HOH A 85 485 28 HOH HOH . E 5 HOH A 86 486 59 HOH HOH . E 5 HOH A 87 487 44 HOH HOH . E 5 HOH A 88 488 70 HOH HOH . E 5 HOH A 89 489 68 HOH HOH . E 5 HOH A 90 490 177 HOH HOH . E 5 HOH A 91 491 122 HOH HOH . E 5 HOH A 92 492 7 HOH HOH . E 5 HOH A 93 493 51 HOH HOH . E 5 HOH A 94 494 169 HOH HOH . E 5 HOH A 95 495 133 HOH HOH . E 5 HOH A 96 496 129 HOH HOH . E 5 HOH A 97 497 74 HOH HOH . E 5 HOH A 98 498 152 HOH HOH . E 5 HOH A 99 499 170 HOH HOH . E 5 HOH A 100 500 108 HOH HOH . E 5 HOH A 101 501 178 HOH HOH . E 5 HOH A 102 502 168 HOH HOH . E 5 HOH A 103 503 182 HOH HOH . E 5 HOH A 104 504 146 HOH HOH . E 5 HOH A 105 505 157 HOH HOH . E 5 HOH A 106 506 113 HOH HOH . E 5 HOH A 107 507 175 HOH HOH . E 5 HOH A 108 508 85 HOH HOH . E 5 HOH A 109 509 116 HOH HOH . E 5 HOH A 110 510 156 HOH HOH . E 5 HOH A 111 511 81 HOH HOH . E 5 HOH A 112 512 126 HOH HOH . E 5 HOH A 113 513 179 HOH HOH . E 5 HOH A 114 514 174 HOH HOH . E 5 HOH A 115 515 166 HOH HOH . E 5 HOH A 116 516 125 HOH HOH . E 5 HOH A 117 517 167 HOH HOH . E 5 HOH A 118 518 130 HOH HOH . E 5 HOH A 119 519 57 HOH HOH . E 5 HOH A 120 520 115 HOH HOH . E 5 HOH A 121 521 35 HOH HOH . E 5 HOH A 122 522 171 HOH HOH . E 5 HOH A 123 523 84 HOH HOH . E 5 HOH A 124 524 83 HOH HOH . E 5 HOH A 125 525 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -53.991 _atom_site.Cartn_y 26.049 _atom_site.Cartn_z -7.306 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.93 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #