data_8TOR
#
_model_server_result.job_id            FiaSngY5V4BBJQNPZ8lKkA 
_model_server_result.datetime_utc      '2025-01-05 02:22:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tor 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":802}' 
#
_entry.id    8TOR 
#
_exptl.entry_id    8TOR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8TOR 
_cell.length_a            180.199 
_cell.length_b            180.199 
_cell.length_c            70.068 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TOR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    'R 3' 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 
3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 B 1 NAG A 1704 NAG 
3 n C NAG 2 B 2 NAG A 1705 NAG 
3 n C FUC 3 B 3 FUC A 1706 FUC 
4 n D NAG 1 C 1 NAG A 1707 NAG 
4 n D NAG 2 C 2 NAG A 1708 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 116 A CYS 133 1_555 A SG CYS 124 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 327 A CYS 344 1_555 A SG CYS 344 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 513 A CYS 530 1_555 A SG CYS 525 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 73 A ASN 90 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
covale ? covale2 A ND2 ASN 86 A ASN 103 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? 
covale ? covale3 A ND2 ASN 529 A ASN 546 1_555 F C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale4 B C ACE 1 E ACE 0 1_555 B N TYR 2 E TYR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 B CH3 ACE 1 E ACE 0 1_555 B SG CYS 14 E CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 B C CYS 14 E CYS 13 1_555 B N NH2 15 E NH2 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? 
covale ? covale7 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale8 C O6 NAG . B NAG 1 1_555 C C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? 
covale ? covale9 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
metalc ? metalc1 A NE2 HIS 357 A HIS 374 1_555 J ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc2 A NE2 HIS 361 A HIS 378 1_555 J ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc3 A OE1 GLU 385 A GLU 402 1_555 J ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 A OE2 GLU 385 A GLU 402 1_555 J ZN ZN . A ZN 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc5 J ZN ZN . A ZN 806 1_555 K O HOH . A HOH 941 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 279 n n 
C1 O1 NAG sing 280 n n 
C1 O5 NAG sing 281 n n 
C1 H1 NAG sing 282 n n 
C2 C3 NAG sing 283 n n 
C2 N2 NAG sing 284 n n 
C2 H2 NAG sing 285 n n 
C3 C4 NAG sing 286 n n 
C3 O3 NAG sing 287 n n 
C3 H3 NAG sing 288 n n 
C4 C5 NAG sing 289 n n 
C4 O4 NAG sing 290 n n 
C4 H4 NAG sing 291 n n 
C5 C6 NAG sing 292 n n 
C5 O5 NAG sing 293 n n 
C5 H5 NAG sing 294 n n 
C6 O6 NAG sing 295 n n 
C6 H61 NAG sing 296 n n 
C6 H62 NAG sing 297 n n 
C7 C8 NAG sing 298 n n 
C7 N2 NAG sing 299 n n 
C7 O7 NAG doub 300 n n 
C8 H81 NAG sing 301 n n 
C8 H82 NAG sing 302 n n 
C8 H83 NAG sing 303 n n 
N2 HN2 NAG sing 304 n n 
O1 HO1 NAG sing 305 n n 
O3 HO3 NAG sing 306 n n 
O4 HO4 NAG sing 307 n n 
O6 HO6 NAG sing 308 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8TOR 
_atom_sites.fract_transf_matrix[1][1]    0.005549 
_atom_sites.fract_transf_matrix[1][2]    0.003204 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 GOL A 1 801 801 GOL GOL . 
F 6 NAG A 1 802 1546 NAG NAG . 
G 5 GOL A 1 803 1601 GOL GOL . 
H 5 GOL A 1 804 1701 GOL GOL . 
I 7 CL A 1 805 1 CL CL . 
J 8 ZN A 1 806 1 ZN ZN . 
K 9 HOH A 1 901 3 HOH HOH . 
K 9 HOH A 2 902 2 HOH HOH . 
K 9 HOH A 3 903 70 HOH HOH . 
K 9 HOH A 4 904 30 HOH HOH . 
K 9 HOH A 5 905 20 HOH HOH . 
K 9 HOH A 6 906 42 HOH HOH . 
K 9 HOH A 7 907 10 HOH HOH . 
K 9 HOH A 8 908 54 HOH HOH . 
K 9 HOH A 9 909 6 HOH HOH . 
K 9 HOH A 10 910 50 HOH HOH . 
K 9 HOH A 11 911 40 HOH HOH . 
K 9 HOH A 12 912 44 HOH HOH . 
K 9 HOH A 13 913 47 HOH HOH . 
K 9 HOH A 14 914 21 HOH HOH . 
K 9 HOH A 15 915 64 HOH HOH . 
K 9 HOH A 16 916 53 HOH HOH . 
K 9 HOH A 17 917 19 HOH HOH . 
K 9 HOH A 18 918 1 HOH HOH . 
K 9 HOH A 19 919 69 HOH HOH . 
K 9 HOH A 20 920 62 HOH HOH . 
K 9 HOH A 21 921 22 HOH HOH . 
K 9 HOH A 22 922 18 HOH HOH . 
K 9 HOH A 23 923 16 HOH HOH . 
K 9 HOH A 24 924 43 HOH HOH . 
K 9 HOH A 25 925 4 HOH HOH . 
K 9 HOH A 26 926 15 HOH HOH . 
K 9 HOH A 27 927 36 HOH HOH . 
K 9 HOH A 28 928 24 HOH HOH . 
K 9 HOH A 29 929 52 HOH HOH . 
K 9 HOH A 30 930 23 HOH HOH . 
K 9 HOH A 31 931 45 HOH HOH . 
K 9 HOH A 32 932 9 HOH HOH . 
K 9 HOH A 33 933 51 HOH HOH . 
K 9 HOH A 34 934 34 HOH HOH . 
K 9 HOH A 35 935 37 HOH HOH . 
K 9 HOH A 36 936 33 HOH HOH . 
K 9 HOH A 37 937 11 HOH HOH . 
K 9 HOH A 38 938 41 HOH HOH . 
K 9 HOH A 39 939 67 HOH HOH . 
K 9 HOH A 40 940 26 HOH HOH . 
K 9 HOH A 41 941 68 HOH HOH . 
K 9 HOH A 42 942 35 HOH HOH . 
K 9 HOH A 43 943 28 HOH HOH . 
K 9 HOH A 44 944 38 HOH HOH . 
K 9 HOH A 45 945 25 HOH HOH . 
K 9 HOH A 46 946 13 HOH HOH . 
K 9 HOH A 47 947 58 HOH HOH . 
K 9 HOH A 48 948 59 HOH HOH . 
K 9 HOH A 49 949 31 HOH HOH . 
K 9 HOH A 50 950 8 HOH HOH . 
K 9 HOH A 51 951 5 HOH HOH . 
K 9 HOH A 52 952 27 HOH HOH . 
K 9 HOH A 53 953 17 HOH HOH . 
K 9 HOH A 54 954 56 HOH HOH . 
K 9 HOH A 55 955 71 HOH HOH . 
K 9 HOH A 56 956 61 HOH HOH . 
K 9 HOH A 57 957 48 HOH HOH . 
K 9 HOH A 58 958 7 HOH HOH . 
K 9 HOH A 59 959 32 HOH HOH . 
K 9 HOH A 60 960 49 HOH HOH . 
K 9 HOH A 61 961 65 HOH HOH . 
K 9 HOH A 62 962 55 HOH HOH . 
K 9 HOH A 63 963 12 HOH HOH . 
K 9 HOH A 64 964 29 HOH HOH . 
K 9 HOH A 65 965 46 HOH HOH . 
K 9 HOH A 66 966 57 HOH HOH . 
K 9 HOH A 67 967 60 HOH HOH . 
K 9 HOH A 68 968 72 HOH HOH . 
K 9 HOH A 69 969 66 HOH HOH . 
K 9 HOH A 70 970 14 HOH HOH . 
K 9 HOH A 71 971 63 HOH HOH . 
L 9 HOH E 1 101 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 6 -41.12 38.603 -43.032 1 100.05 ? C1 NAG 802 A 1 
HETATM 2 C C2 NAG . . . F 6 -42.061 37.55 -43.624 1 102.98 ? C2 NAG 802 A 1 
HETATM 3 C C3 NAG . . . F 6 -41.924 37.502 -45.147 1 104.68 ? C3 NAG 802 A 1 
HETATM 4 C C4 NAG . . . F 6 -42.062 38.893 -45.75 1 106.29 ? C4 NAG 802 A 1 
HETATM 5 C C5 NAG . . . F 6 -41.105 39.863 -45.063 1 107.08 ? C5 NAG 802 A 1 
HETATM 6 C C6 NAG . . . F 6 -41.259 41.29 -45.537 1 105.58 ? C6 NAG 802 A 1 
HETATM 7 C C7 NAG . . . F 6 -42.601 35.623 -42.199 1 98.4 ? C7 NAG 802 A 1 
HETATM 8 C C8 NAG . . . F 6 -42.136 34.29 -41.703 1 88.02 ? C8 NAG 802 A 1 
HETATM 9 N N2 NAG . . . F 6 -41.781 36.245 -43.051 1 97.91 ? N2 NAG 802 A 1 
HETATM 10 O O3 NAG . . . F 6 -42.924 36.64 -45.681 1 104.84 ? O3 NAG 802 A 1 
HETATM 11 O O4 NAG . . . F 6 -41.773 38.851 -47.144 1 116.72 ? O4 NAG 802 A 1 
HETATM 12 O O5 NAG . . . F 6 -41.357 39.864 -43.65 1 99.58 ? O5 NAG 802 A 1 
HETATM 13 O O6 NAG . . . F 6 -41.206 42.213 -44.458 1 106.84 ? O6 NAG 802 A 1 
HETATM 14 O O7 NAG . . . F 6 -43.67 36.114 -41.847 1 96.72 ? O7 NAG 802 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           232 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#