data_8TOS # _model_server_result.job_id ZY94NA-Rewh1Q8eYrk2bDg _model_server_result.datetime_utc '2025-01-13 11:54:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":703}' # _entry.id 8TOS # _exptl.entry_id 8TOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8TOS _cell.length_a 179.566 _cell.length_b 179.566 _cell.length_c 70.252 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG A 900 NAG 3 n C FUC 2 B 2 FUC A 901 FUC 3 n D NAG 1 C 1 NAG A 1003 NAG 3 n D FUC 2 C 2 FUC A 1004 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 133 1_555 A SG CYS 124 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 327 A CYS 344 1_555 A SG CYS 344 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 513 A CYS 530 1_555 A SG CYS 525 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 73 A ASN 90 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 86 A ASN 103 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale3 A ND2 ASN 529 A ASN 546 1_555 G C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 C O6 NAG . B NAG 1 1_555 C C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 D O6 NAG . C NAG 1 1_555 D C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A NE2 HIS 357 A HIS 374 1_555 K ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc2 A NE2 HIS 361 A HIS 378 1_555 K ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc3 A OE1 GLU 385 A GLU 402 1_555 K ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 A OE2 GLU 385 A GLU 402 1_555 K ZN ZN . A ZN 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 279 n n C1 O1 NAG sing 280 n n C1 O5 NAG sing 281 n n C1 H1 NAG sing 282 n n C2 C3 NAG sing 283 n n C2 N2 NAG sing 284 n n C2 H2 NAG sing 285 n n C3 C4 NAG sing 286 n n C3 O3 NAG sing 287 n n C3 H3 NAG sing 288 n n C4 C5 NAG sing 289 n n C4 O4 NAG sing 290 n n C4 H4 NAG sing 291 n n C5 C6 NAG sing 292 n n C5 O5 NAG sing 293 n n C5 H5 NAG sing 294 n n C6 O6 NAG sing 295 n n C6 H61 NAG sing 296 n n C6 H62 NAG sing 297 n n C7 C8 NAG sing 298 n n C7 N2 NAG sing 299 n n C7 O7 NAG doub 300 n n C8 H81 NAG sing 301 n n C8 H82 NAG sing 302 n n C8 H83 NAG sing 303 n n N2 HN2 NAG sing 304 n n O1 HO1 NAG sing 305 n n O3 HO3 NAG sing 306 n n O4 HO4 NAG sing 307 n n O6 HO6 NAG sing 308 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8TOS _atom_sites.fract_transf_matrix[1][1] 0.005569 _atom_sites.fract_transf_matrix[1][2] 0.003215 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GOL A 1 701 701 GOL GOL . F 4 GOL A 1 702 1101 GOL GOL . G 5 NAG A 1 703 1546 NAG NAG . H 4 GOL A 1 704 1601 GOL GOL . I 4 GOL A 1 705 1701 GOL GOL . J 4 GOL A 1 706 1801 GOL GOL . K 6 ZN A 1 707 1 ZN ZN . L 7 CL A 1 708 1 CL CL . M 8 HOH A 1 801 92 HOH HOH . M 8 HOH A 2 802 102 HOH HOH . M 8 HOH A 3 803 48 HOH HOH . M 8 HOH A 4 804 20 HOH HOH . M 8 HOH A 5 805 6 HOH HOH . M 8 HOH A 6 806 34 HOH HOH . M 8 HOH A 7 807 44 HOH HOH . M 8 HOH A 8 808 9 HOH HOH . M 8 HOH A 9 809 32 HOH HOH . M 8 HOH A 10 810 33 HOH HOH . M 8 HOH A 11 811 18 HOH HOH . M 8 HOH A 12 812 63 HOH HOH . M 8 HOH A 13 813 62 HOH HOH . M 8 HOH A 14 814 11 HOH HOH . M 8 HOH A 15 815 2 HOH HOH . M 8 HOH A 16 816 64 HOH HOH . M 8 HOH A 17 817 15 HOH HOH . M 8 HOH A 18 818 61 HOH HOH . M 8 HOH A 19 819 109 HOH HOH . M 8 HOH A 20 820 93 HOH HOH . M 8 HOH A 21 821 22 HOH HOH . M 8 HOH A 22 822 26 HOH HOH . M 8 HOH A 23 823 107 HOH HOH . M 8 HOH A 24 824 76 HOH HOH . M 8 HOH A 25 825 51 HOH HOH . M 8 HOH A 26 826 30 HOH HOH . M 8 HOH A 27 827 71 HOH HOH . M 8 HOH A 28 828 79 HOH HOH . M 8 HOH A 29 829 100 HOH HOH . M 8 HOH A 30 830 1 HOH HOH . M 8 HOH A 31 831 54 HOH HOH . M 8 HOH A 32 832 25 HOH HOH . M 8 HOH A 33 833 58 HOH HOH . M 8 HOH A 34 834 77 HOH HOH . M 8 HOH A 35 835 24 HOH HOH . M 8 HOH A 36 836 70 HOH HOH . M 8 HOH A 37 837 3 HOH HOH . M 8 HOH A 38 838 46 HOH HOH . M 8 HOH A 39 839 81 HOH HOH . M 8 HOH A 40 840 82 HOH HOH . M 8 HOH A 41 841 68 HOH HOH . M 8 HOH A 42 842 23 HOH HOH . M 8 HOH A 43 843 56 HOH HOH . M 8 HOH A 44 844 47 HOH HOH . M 8 HOH A 45 845 29 HOH HOH . M 8 HOH A 46 846 27 HOH HOH . M 8 HOH A 47 847 45 HOH HOH . M 8 HOH A 48 848 35 HOH HOH . M 8 HOH A 49 849 52 HOH HOH . M 8 HOH A 50 850 40 HOH HOH . M 8 HOH A 51 851 12 HOH HOH . M 8 HOH A 52 852 28 HOH HOH . M 8 HOH A 53 853 101 HOH HOH . M 8 HOH A 54 854 60 HOH HOH . M 8 HOH A 55 855 74 HOH HOH . M 8 HOH A 56 856 78 HOH HOH . M 8 HOH A 57 857 17 HOH HOH . M 8 HOH A 58 858 39 HOH HOH . M 8 HOH A 59 859 90 HOH HOH . M 8 HOH A 60 860 43 HOH HOH . M 8 HOH A 61 861 7 HOH HOH . M 8 HOH A 62 862 5 HOH HOH . M 8 HOH A 63 863 37 HOH HOH . M 8 HOH A 64 864 98 HOH HOH . M 8 HOH A 65 865 14 HOH HOH . M 8 HOH A 66 866 53 HOH HOH . M 8 HOH A 67 867 97 HOH HOH . M 8 HOH A 68 868 10 HOH HOH . M 8 HOH A 69 869 83 HOH HOH . M 8 HOH A 70 870 59 HOH HOH . M 8 HOH A 71 871 57 HOH HOH . M 8 HOH A 72 872 69 HOH HOH . M 8 HOH A 73 873 55 HOH HOH . M 8 HOH A 74 874 49 HOH HOH . M 8 HOH A 75 875 103 HOH HOH . M 8 HOH A 76 876 108 HOH HOH . M 8 HOH A 77 877 66 HOH HOH . M 8 HOH A 78 878 86 HOH HOH . M 8 HOH A 79 879 38 HOH HOH . M 8 HOH A 80 880 94 HOH HOH . M 8 HOH A 81 881 106 HOH HOH . M 8 HOH A 82 882 4 HOH HOH . M 8 HOH A 83 883 73 HOH HOH . M 8 HOH A 84 884 8 HOH HOH . M 8 HOH A 85 885 21 HOH HOH . M 8 HOH A 86 886 16 HOH HOH . M 8 HOH A 87 887 13 HOH HOH . M 8 HOH A 88 888 19 HOH HOH . M 8 HOH A 89 889 42 HOH HOH . M 8 HOH A 90 890 91 HOH HOH . M 8 HOH A 91 891 99 HOH HOH . M 8 HOH A 92 892 84 HOH HOH . M 8 HOH A 93 893 89 HOH HOH . M 8 HOH A 94 894 104 HOH HOH . M 8 HOH A 95 895 105 HOH HOH . M 8 HOH A 96 896 87 HOH HOH . M 8 HOH A 97 897 41 HOH HOH . M 8 HOH A 98 898 50 HOH HOH . M 8 HOH A 99 899 36 HOH HOH . M 8 HOH A 100 900 85 HOH HOH . M 8 HOH A 101 901 95 HOH HOH . M 8 HOH A 102 902 96 HOH HOH . M 8 HOH A 103 903 65 HOH HOH . M 8 HOH A 104 904 75 HOH HOH . M 8 HOH A 105 905 80 HOH HOH . M 8 HOH A 106 906 72 HOH HOH . M 8 HOH A 107 907 88 HOH HOH . N 8 HOH E 1 101 31 HOH HOH . N 8 HOH E 2 102 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 5 -41.662 38.297 -42.344 1 87.61 ? C1 NAG 703 A 1 HETATM 2 C C2 NAG . . . G 5 -43.068 37.807 -42.66 1 89.36 ? C2 NAG 703 A 1 HETATM 3 C C3 NAG . . . G 5 -43.179 37.481 -44.145 1 91.81 ? C3 NAG 703 A 1 HETATM 4 C C4 NAG . . . G 5 -42.816 38.715 -44.962 1 96.25 ? C4 NAG 703 A 1 HETATM 5 C C5 NAG . . . G 5 -41.432 39.229 -44.564 1 92.3 ? C5 NAG 703 A 1 HETATM 6 C C6 NAG . . . G 5 -41.086 40.548 -45.217 1 96.86 ? C6 NAG 703 A 1 HETATM 7 C C7 NAG . . . G 5 -44.079 36.792 -40.675 1 87.54 ? C7 NAG 703 A 1 HETATM 8 C C8 NAG . . . G 5 -44.381 35.52 -39.941 1 82.37 ? C8 NAG 703 A 1 HETATM 9 N N2 NAG . . . G 5 -43.432 36.663 -41.84 1 87.26 ? N2 NAG 703 A 1 HETATM 10 O O3 NAG . . . G 5 -44.501 37.059 -44.454 1 90.58 ? O3 NAG 703 A 1 HETATM 11 O O4 NAG . . . G 5 -42.829 38.42 -46.354 1 100.98 ? O4 NAG 703 A 1 HETATM 12 O O5 NAG . . . G 5 -41.363 39.449 -43.146 1 88.55 ? O5 NAG 703 A 1 HETATM 13 O O6 NAG . . . G 5 -41.349 41.637 -44.341 1 97.22 ? O6 NAG 703 A 1 HETATM 14 O O7 NAG . . . G 5 -44.407 37.89 -40.233 1 88.16 ? O7 NAG 703 A 1 HETATM 15 H H2 NAG . . . G 5 -43.698 38.526 -42.46 1 107.32 ? H2 NAG 703 A 1 HETATM 16 H H3 NAG . . . G 5 -42.568 36.751 -44.362 1 110.26 ? H3 NAG 703 A 1 HETATM 17 H H4 NAG . . . G 5 -43.478 39.411 -44.786 1 115.6 ? H4 NAG 703 A 1 HETATM 18 H H5 NAG . . . G 5 -40.77 38.555 -44.808 1 110.85 ? H5 NAG 703 A 1 HETATM 19 H H61 NAG . . . G 5 -41.62 40.653 -46.027 1 116.33 ? H61 NAG 703 A 1 HETATM 20 H H62 NAG . . . G 5 -40.14 40.549 -45.454 1 116.33 ? H62 NAG 703 A 1 HETATM 21 H H81 NAG . . . G 5 -44.289 35.669 -38.981 1 98.94 ? H81 NAG 703 A 1 HETATM 22 H H82 NAG . . . G 5 -43.758 34.825 -40.225 1 98.94 ? H82 NAG 703 A 1 HETATM 23 H H83 NAG . . . G 5 -45.295 35.24 -40.14 1 98.94 ? H83 NAG 703 A 1 HETATM 24 H HN2 NAG . . . G 5 -43.212 35.827 -42.13 1 104.8 ? HN2 NAG 703 A 1 HETATM 25 H HO3 NAG . . . G 5 -44.542 36.821 -45.309 1 108.79 ? HO3 NAG 703 A 1 HETATM 26 H HO4 NAG . . . G 5 -43.312 39.032 -46.781 1 121.27 ? HO4 NAG 703 A 1 HETATM 27 H HO6 NAG . . . G 5 -41.469 41.33 -43.516 1 116.76 ? HO6 NAG 703 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #