data_8TP1
#
_model_server_result.job_id            vvBYyGyburg-wT8u7skvFg 
_model_server_result.datetime_utc      '2024-12-27 05:30:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8tp1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":700}' 
#
_entry.id    8TP1 
#
_exptl.entry_id    8TP1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8TP1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8TP1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 237 A SER 237 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc2 H O2G ATP . A ATP 700 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc3 H O3G ATP . A ATP 700 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc4 H O2B ATP . A ATP 700 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc5 B OG SER 237 B SER 237 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc6 B OE2 GLU 282 B GLU 282 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc7 J O2G ATP . B ATP 700 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc8 J O3G ATP . B ATP 700 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc9 C OG SER 237 C SER 237 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc10 C OE2 GLU 282 C GLU 282 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc11 L O2G ATP . C ATP 700 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc12 L O3G ATP . C ATP 700 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc13 D OG SER 237 D SER 237 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc14 D OE2 GLU 282 D GLU 282 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc15 N O2G ATP . D ATP 700 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc16 N O3G ATP . D ATP 700 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc17 E OG SER 237 E SER 237 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc18 E OE2 GLU 282 E GLU 282 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc19 P O2G ATP . E ATP 700 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc20 P O3G ATP . E ATP 700 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc21 F OG SER 237 F SER 237 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc22 F OE2 GLU 282 F GLU 282 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc23 R O2G ATP . F ATP 700 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
metalc ? metalc24 R O3G ATP . F ATP 700 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc25 G OG SER 237 G SER 237 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc26 G OE2 GLU 282 G GLU 282 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc27 T O2G ATP . G ATP 700 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? 
metalc ? metalc28 T O3G ATP . G ATP 700 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8TP1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 ATP A 1 700 700 ATP ATP . 
I 3 MG A 1 701 701 MG MG . 
J 2 ATP B 1 700 700 ATP ATP . 
K 3 MG B 1 701 701 MG MG . 
L 2 ATP C 1 700 700 ATP ATP . 
M 3 MG C 1 701 701 MG MG . 
N 2 ATP D 1 700 700 ATP ATP . 
O 3 MG D 1 701 701 MG MG . 
P 2 ATP E 1 700 700 ATP ATP . 
Q 3 MG E 1 701 701 MG MG . 
R 2 ATP F 1 700 700 ATP ATP . 
S 3 MG F 1 701 701 MG MG . 
T 2 ATP G 1 700 700 ATP ATP . 
U 3 MG G 1 701 701 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . L 2 183.038 149.54 123.783 1 129.7 ? PG ATP 700 C 1 
HETATM 2 O O1G ATP . . . L 2 182.031 148.534 123.341 1 109.64 ? O1G ATP 700 C 1 
HETATM 3 O O2G ATP . . . L 2 183.489 149.377 125.236 1 103.62 ? O2G ATP 700 C 1 
HETATM 4 O O3G ATP . . . L 2 182.597 150.987 123.569 1 109.47 ? O3G ATP 700 C 1 
HETATM 5 P PB ATP . . . L 2 185.77 150.103 122.772 1 109.58 ? PB ATP 700 C 1 
HETATM 6 O O1B ATP . . . L 2 186.055 150.448 121.37 1 103.13 ? O1B ATP 700 C 1 
HETATM 7 O O2B ATP . . . L 2 185.799 151.254 123.766 1 102.49 ? O2B ATP 700 C 1 
HETATM 8 O O3B ATP . . . L 2 184.373 149.4 122.934 1 106.58 ? O3B ATP 700 C 1 
HETATM 9 P PA ATP . . . L 2 187.456 148.668 124.706 1 100.11 ? PA ATP 700 C 1 
HETATM 10 O O1A ATP . . . L 2 186.465 148.287 125.731 1 104.18 ? O1A ATP 700 C 1 
HETATM 11 O O2A ATP . . . L 2 188.317 149.872 125.062 1 103.06 ? O2A ATP 700 C 1 
HETATM 12 O O3A ATP . . . L 2 186.76 148.992 123.333 1 101.84 ? O3A ATP 700 C 1 
HETATM 13 O O5' ATP . . . L 2 188.409 147.463 124.351 1 90.13 ? O5' ATP 700 C 1 
HETATM 14 C C5' ATP . . . L 2 188.092 146.118 124.76 1 95.16 ? C5' ATP 700 C 1 
HETATM 15 C C4' ATP . . . L 2 189.354 145.297 124.747 1 93.21 ? C4' ATP 700 C 1 
HETATM 16 O O4' ATP . . . L 2 190.212 145.75 123.677 1 86.83 ? O4' ATP 700 C 1 
HETATM 17 C C3' ATP . . . L 2 190.19 145.378 126.022 1 92.63 ? C3' ATP 700 C 1 
HETATM 18 O O3' ATP . . . L 2 190.824 144.135 126.296 1 103.11 ? O3' ATP 700 C 1 
HETATM 19 C C2' ATP . . . L 2 191.207 146.468 125.686 1 93.68 ? C2' ATP 700 C 1 
HETATM 20 O O2' ATP . . . L 2 192.416 146.297 126.415 1 104.31 ? O2' ATP 700 C 1 
HETATM 21 C C1' ATP . . . L 2 191.443 146.206 124.201 1 87.02 ? C1' ATP 700 C 1 
HETATM 22 N N9 ATP . . . L 2 191.85 147.384 123.449 1 87.85 ? N9 ATP 700 C 1 
HETATM 23 C C8 ATP . . . L 2 191.092 148.096 122.559 1 98.21 ? C8 ATP 700 C 1 
HETATM 24 N N7 ATP . . . L 2 191.715 149.117 122.023 1 100.15 ? N7 ATP 700 C 1 
HETATM 25 C C5 ATP . . . L 2 192.971 149.076 122.605 1 89.54 ? C5 ATP 700 C 1 
HETATM 26 C C6 ATP . . . L 2 194.111 149.888 122.46 1 87.71 ? C6 ATP 700 C 1 
HETATM 27 N N6 ATP . . . L 2 194.17 150.949 121.651 1 88.69 ? N6 ATP 700 C 1 
HETATM 28 N N1 ATP . . . L 2 195.203 149.571 123.185 1 97.24 ? N1 ATP 700 C 1 
HETATM 29 C C2 ATP . . . L 2 195.151 148.512 123.996 1 101.11 ? C2 ATP 700 C 1 
HETATM 30 N N3 ATP . . . L 2 194.136 147.674 124.214 1 96.6 ? N3 ATP 700 C 1 
HETATM 31 C C4 ATP . . . L 2 193.069 148.012 123.485 1 90.88 ? C4 ATP 700 C 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#