data_8TP1 # _model_server_result.job_id '_UT1kLFCTlVO_FT7m2SYIg' _model_server_result.datetime_utc '2024-12-27 05:05:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tp1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":700}' # _entry.id 8TP1 # _exptl.entry_id 8TP1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TP1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N ? 2 P N N ? 2 R N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 237 A SER 237 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 H O2G ATP . A ATP 700 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc3 H O3G ATP . A ATP 700 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc4 H O2B ATP . A ATP 700 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc5 B OG SER 237 B SER 237 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc6 B OE2 GLU 282 B GLU 282 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc7 J O2G ATP . B ATP 700 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc8 J O3G ATP . B ATP 700 1_555 K MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc9 C OG SER 237 C SER 237 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 C OE2 GLU 282 C GLU 282 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc11 L O2G ATP . C ATP 700 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc12 L O3G ATP . C ATP 700 1_555 M MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc13 D OG SER 237 D SER 237 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc14 D OE2 GLU 282 D GLU 282 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc15 N O2G ATP . D ATP 700 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc16 N O3G ATP . D ATP 700 1_555 O MG MG . D MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc17 E OG SER 237 E SER 237 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc18 E OE2 GLU 282 E GLU 282 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc19 P O2G ATP . E ATP 700 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc20 P O3G ATP . E ATP 700 1_555 Q MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc21 F OG SER 237 F SER 237 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc22 F OE2 GLU 282 F GLU 282 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc23 R O2G ATP . F ATP 700 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc24 R O3G ATP . F ATP 700 1_555 S MG MG . F MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc25 G OG SER 237 G SER 237 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc26 G OE2 GLU 282 G GLU 282 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc27 T O2G ATP . G ATP 700 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc28 T O3G ATP . G ATP 700 1_555 U MG MG . G MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8TP1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 ATP A 1 700 700 ATP ATP . I 3 MG A 1 701 701 MG MG . J 2 ATP B 1 700 700 ATP ATP . K 3 MG B 1 701 701 MG MG . L 2 ATP C 1 700 700 ATP ATP . M 3 MG C 1 701 701 MG MG . N 2 ATP D 1 700 700 ATP ATP . O 3 MG D 1 701 701 MG MG . P 2 ATP E 1 700 700 ATP ATP . Q 3 MG E 1 701 701 MG MG . R 2 ATP F 1 700 700 ATP ATP . S 3 MG F 1 701 701 MG MG . T 2 ATP G 1 700 700 ATP ATP . U 3 MG G 1 701 701 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . P 2 142.033 116.581 123.785 1 139.23 ? PG ATP 700 E 1 HETATM 2 O O1G ATP . . . P 2 141.272 117.786 123.351 1 117.58 ? O1G ATP 700 E 1 HETATM 3 O O2G ATP . . . P 2 141.784 116.173 125.239 1 113.5 ? O2G ATP 700 E 1 HETATM 4 O O3G ATP . . . P 2 143.54 116.691 123.561 1 118.66 ? O3G ATP 700 E 1 HETATM 5 P PB ATP . . . P 2 141.979 113.797 122.76 1 118.29 ? PB ATP 700 E 1 HETATM 6 O O1B ATP . . . P 2 142.24 113.453 121.354 1 111.55 ? O1B ATP 700 E 1 HETATM 7 O O2B ATP . . . P 2 143.107 113.516 123.74 1 111.95 ? O2B ATP 700 E 1 HETATM 8 O O3B ATP . . . P 2 141.596 115.311 122.937 1 115.43 ? O3B ATP 700 E 1 HETATM 9 P PA ATP . . . P 2 140.23 112.471 124.714 1 108.34 ? PA ATP 700 E 1 HETATM 10 O O1A ATP . . . P 2 140.071 113.531 125.727 1 110.55 ? O1A ATP 700 E 1 HETATM 11 O O2A ATP . . . P 2 141.225 111.379 125.078 1 112.31 ? O2A ATP 700 E 1 HETATM 12 O O3A ATP . . . P 2 140.688 113.066 123.332 1 110.76 ? O3A ATP 700 E 1 HETATM 13 O O5' ATP . . . P 2 138.849 111.79 124.371 1 99.4 ? O5' ATP 700 E 1 HETATM 14 C C5' ATP . . . P 2 137.602 112.397 124.764 1 103.43 ? C5' ATP 700 E 1 HETATM 15 C C4' ATP . . . P 2 136.524 111.346 124.748 1 102.24 ? C4' ATP 700 E 1 HETATM 16 O O4' ATP . . . P 2 136.777 110.412 123.675 1 96.11 ? O4' ATP 700 E 1 HETATM 17 C C3' ATP . . . P 2 136.418 110.51 126.02 1 103.19 ? C3' ATP 700 E 1 HETATM 18 O O3' ATP . . . P 2 135.065 110.168 126.294 1 110.41 ? O3' ATP 700 E 1 HETATM 19 C C2' ATP . . . P 2 137.254 109.276 125.681 1 103.75 ? C2' ATP 700 E 1 HETATM 20 O O2' ATP . . . P 2 136.821 108.134 126.407 1 114.16 ? O2' ATP 700 E 1 HETATM 21 C C1' ATP . . . P 2 136.946 109.108 124.195 1 96.6 ? C1' ATP 700 E 1 HETATM 22 N N9 ATP . . . P 2 138.004 108.451 123.442 1 95.65 ? N9 ATP 700 E 1 HETATM 23 C C8 ATP . . . P 2 138.865 109.033 122.551 1 105.61 ? C8 ATP 700 E 1 HETATM 24 N N7 ATP . . . P 2 139.722 108.201 122.014 1 106.59 ? N7 ATP 700 E 1 HETATM 25 C C5 ATP . . . P 2 139.405 106.984 122.596 1 96.76 ? C5 ATP 700 E 1 HETATM 26 C C6 ATP . . . P 2 139.945 105.693 122.45 1 95.25 ? C6 ATP 700 E 1 HETATM 27 N N6 ATP . . . P 2 140.965 105.401 121.639 1 97.26 ? N6 ATP 700 E 1 HETATM 28 N N1 ATP . . . P 2 139.394 104.698 123.174 1 106.85 ? N1 ATP 700 E 1 HETATM 29 C C2 ATP . . . P 2 138.374 104.982 123.986 1 111.64 ? C2 ATP 700 E 1 HETATM 30 N N3 ATP . . . P 2 137.782 106.157 124.206 1 107.02 ? N3 ATP 700 E 1 HETATM 31 C C4 ATP . . . P 2 138.347 107.123 123.477 1 100.04 ? C4 ATP 700 E 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 84 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #