data_8TPR # _model_server_result.job_id 93DkMAZpO0BEyaJLp44YeQ _model_server_result.datetime_utc '2024-10-11 03:19:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 8TPR # _exptl.entry_id 8TPR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TPR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 449 A ASN 448 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OE1 GLU 453 A GLU 452 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc3 A OE2 GLU 453 A GLU 452 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 A OD1 ASP 504 A ASP 503 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc5 A OE1 GLU 507 A GLU 506 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc6 A OE2 GLU 507 A GLU 506 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc7 A OE2 GLU 536 A GLU 535 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc8 A OE1 GLU 536 A GLU 535 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc9 A OE2 GLU 536 A GLU 535 1_555 D CA CA . A CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc10 A OD1 ASP 540 A ASP 539 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc11 A OD2 ASP 540 A ASP 539 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc12 B OD1 ASN 449 B ASN 448 1_555 H CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 B OE1 GLU 453 B GLU 452 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc14 B OE2 GLU 453 B GLU 452 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc15 B OD1 ASP 504 B ASP 503 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc16 B OE1 GLU 507 B GLU 506 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc17 B OE2 GLU 507 B GLU 506 1_555 H CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc18 B OE2 GLU 536 B GLU 535 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc19 B OE1 GLU 536 B GLU 535 1_555 H CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc20 B OE2 GLU 536 B GLU 535 1_555 H CA CA . B CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc21 B OD1 ASP 540 B ASP 539 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc22 B OD2 ASP 540 B ASP 539 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 235 n n CAD HAD PGW sing 236 n n CAD HADA PGW sing 237 n n OAE CAD PGW sing 238 n n OAE HOAE PGW sing 239 n n OAF C05 PGW sing 240 n n OAF HOAF PGW sing 241 n n P O13 PGW sing 242 n n P O11 PGW sing 243 n n C01 O03 PGW sing 244 n n C01 C02 PGW sing 245 n n C01 H01 PGW sing 246 n n C01 H01A PGW sing 247 n n C1 C2 PGW sing 248 n n O01 C1 PGW sing 249 n n C02 O01 PGW sing 250 n n C02 H02 PGW sing 251 n n C2 C3 PGW sing 252 n n C2 H2 PGW sing 253 n n C2 H2A PGW sing 254 n n O02 C1 PGW doub 255 n n C03 C02 PGW sing 256 n n C03 H03 PGW sing 257 n n C03 H03A PGW sing 258 n n C3 C4 PGW sing 259 n n C3 H3 PGW sing 260 n n C3 H3A PGW sing 261 n n C04 C05 PGW sing 262 n n C04 O12 PGW sing 263 n n C04 H04 PGW sing 264 n n C04 H04A PGW sing 265 n n C4 C5 PGW sing 266 n n C4 H4 PGW sing 267 n n C4 H4A PGW sing 268 n n O04 C19 PGW doub 269 n n C05 H05 PGW sing 270 n n C5 C6 PGW sing 271 n n C5 H5 PGW sing 272 n n C5 H5A PGW sing 273 n n C06 C07 PGW sing 274 n n C06 H06 PGW sing 275 n n C06 H06A PGW sing 276 n n C6 C7 PGW sing 277 n n C6 H6 PGW sing 278 n n C6 H6A PGW sing 279 n n C07 H07 PGW sing 280 n n C07 H07A PGW sing 281 n n C7 C8 PGW sing 282 n n C7 H7 PGW sing 283 n n C7 H7A PGW sing 284 n n C08 C07 PGW sing 285 n n C08 H08 PGW sing 286 n n C08 H08A PGW sing 287 n n C8 C9 PGW sing 288 n n C8 H8 PGW sing 289 n n C8 H8A PGW sing 290 n n C09 C08 PGW sing 291 n n C09 C11 PGW sing 292 n n C09 H09 PGW sing 293 n n C09 H09A PGW sing 294 n n C9 C10 PGW doub 295 z n C10 C06 PGW sing 296 n n C11 H11 PGW sing 297 n n C11 H11A PGW sing 298 n n O11 C03 PGW sing 299 n n C12 C11 PGW sing 300 n n C12 H12 PGW sing 301 n n C12 H12A PGW sing 302 n n O12 P PGW sing 303 n n C13 C12 PGW sing 304 n n C13 C14 PGW sing 305 n n C13 H13 PGW sing 306 n n C13 H13A PGW sing 307 n n O13 HO13 PGW sing 308 n n C14 H14 PGW sing 309 n n C14 H14A PGW sing 310 n n C14 H14B PGW sing 311 n n O14 P PGW doub 312 n n C15 C16 PGW sing 313 n n C15 H15 PGW sing 314 n n C15 H15A PGW sing 315 n n C16 H16 PGW sing 316 n n C16 H16A PGW sing 317 n n C17 C16 PGW sing 318 n n C17 C18 PGW sing 319 n n C17 H17 PGW sing 320 n n C17 H17A PGW sing 321 n n C18 C28 PGW sing 322 n n C18 H18 PGW sing 323 n n C18 H18A PGW sing 324 n n C19 O03 PGW sing 325 n n C19 C20 PGW sing 326 n n C20 C21 PGW sing 327 n n C20 H20 PGW sing 328 n n C20 H20A PGW sing 329 n n C21 C22 PGW sing 330 n n C21 H21 PGW sing 331 n n C21 H21A PGW sing 332 n n C22 C23 PGW sing 333 n n C22 H22 PGW sing 334 n n C22 H22A PGW sing 335 n n C23 C24 PGW sing 336 n n C23 H23 PGW sing 337 n n C23 H23A PGW sing 338 n n C24 C25 PGW sing 339 n n C24 H24 PGW sing 340 n n C24 H24A PGW sing 341 n n C25 C26 PGW sing 342 n n C25 H25 PGW sing 343 n n C25 H25A PGW sing 344 n n C26 C27 PGW sing 345 n n C26 H26 PGW sing 346 n n C26 H26A PGW sing 347 n n C27 C15 PGW sing 348 n n C27 H27 PGW sing 349 n n C27 H27A PGW sing 350 n n C28 H28 PGW sing 351 n n C28 H28A PGW sing 352 n n C29 H29 PGW sing 353 n n C29 H29A PGW sing 354 n n C29 H29B PGW sing 355 n n C30 C28 PGW sing 356 n n C30 C29 PGW sing 357 n n C30 H30 PGW sing 358 n n C30 H30A PGW sing 359 n n C9 H9 PGW sing 360 n n C10 H10 PGW sing 361 n n # _atom_sites.entry_id 8TPR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 801 801 CA CA . D 2 CA A 1 802 802 CA CA . E 3 PGW A 1 803 901 PGW PGW . F 3 PGW A 1 804 902 PGW PGW . G 2 CA B 1 801 801 CA CA . H 2 CA B 1 802 802 CA CA . I 3 PGW B 1 803 901 PGW PGW . J 3 PGW B 1 804 902 PGW PGW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGW . . . F 3 110.216 93.927 97.799 1 115.68 ? P PGW 804 A 1 HETATM 2 C C01 PGW . . . F 3 109.829 92.611 101.595 1 91.6 ? C01 PGW 804 A 1 HETATM 3 C C1 PGW . . . F 3 113.389 92.047 102.006 1 90.91 ? C1 PGW 804 A 1 HETATM 4 O O01 PGW . . . F 3 112.041 91.669 101.761 1 92.91 ? O01 PGW 804 A 1 HETATM 5 C C02 PGW . . . F 3 111.272 92.649 101.091 1 91.55 ? C02 PGW 804 A 1 HETATM 6 C C2 PGW . . . F 3 113.877 92.37 103.438 1 88.18 ? C2 PGW 804 A 1 HETATM 7 O O02 PGW . . . F 3 114.151 92.115 101.106 1 88.35 ? O02 PGW 804 A 1 HETATM 8 C C03 PGW . . . F 3 111.276 92.381 99.602 1 86.51 ? C03 PGW 804 A 1 HETATM 9 C C3 PGW . . . F 3 112.687 92.421 104.415 1 88.92 ? C3 PGW 804 A 1 HETATM 10 O O03 PGW . . . F 3 109.797 92.203 102.928 1 94.1 ? O03 PGW 804 A 1 HETATM 11 C C4 PGW . . . F 3 113.021 93.369 105.583 1 83.32 ? C4 PGW 804 A 1 HETATM 12 O O04 PGW . . . F 3 108.097 90.851 102.386 1 95.3 ? O04 PGW 804 A 1 HETATM 13 C C5 PGW . . . F 3 112.09 93.083 106.763 1 83.73 ? C5 PGW 804 A 1 HETATM 14 C C06 PGW . . . F 3 113.591 89.288 112.747 1 85.53 ? C06 PGW 804 A 1 HETATM 15 C C6 PGW . . . F 3 112.346 91.658 107.275 1 87.85 ? C6 PGW 804 A 1 HETATM 16 C C7 PGW . . . F 3 111.747 91.495 108.68 1 85.06 ? C7 PGW 804 A 1 HETATM 17 C C8 PGW . . . F 3 112.864 91.682 109.744 1 88.29 ? C8 PGW 804 A 1 HETATM 18 C C9 PGW . . . F 3 112.869 90.476 110.691 1 90.55 ? C9 PGW 804 A 1 HETATM 19 C C10 PGW . . . F 3 113.591 90.501 111.804 1 89.07 ? C10 PGW 804 A 1 HETATM 20 O O11 PGW . . . F 3 110.114 92.883 99.049 1 95.66 ? O11 PGW 804 A 1 HETATM 21 O O12 PGW . . . F 3 110.005 93.12 96.394 1 96.01 ? O12 PGW 804 A 1 HETATM 22 O O13 PGW . . . F 3 111.573 94.59 97.797 1 94.4 ? O13 PGW 804 A 1 HETATM 23 O O14 PGW . . . F 3 109.148 94.981 97.938 1 97.75 ? O14 PGW 804 A 1 HETATM 24 C C19 PGW . . . F 3 108.683 91.418 103.247 1 92.53 ? C19 PGW 804 A 1 HETATM 25 C C20 PGW . . . F 3 108.223 91.287 104.695 1 89.82 ? C20 PGW 804 A 1 HETATM 26 C C21 PGW . . . F 3 107.725 89.867 104.936 1 91.35 ? C21 PGW 804 A 1 HETATM 27 C C22 PGW . . . F 3 107.515 89.641 106.43 1 91.76 ? C22 PGW 804 A 1 HETATM 28 C C23 PGW . . . F 3 108.836 89.867 107.177 1 92.49 ? C23 PGW 804 A 1 HETATM 29 C C24 PGW . . . F 3 109.037 88.754 108.21 1 90.84 ? C24 PGW 804 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #