data_8TQ9 # _model_server_result.job_id OHSAAVRiFet0hUZ6fEXZaQ _model_server_result.datetime_utc '2025-01-25 12:45:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 8TQ9 # _exptl.entry_id 8TQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8TQ9 _cell.length_a 54.901 _cell.length_b 183.181 _cell.length_c 216.715 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 101 1_555 A SG CYS 163 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 202 A CYS 203 1_555 A SG CYS 258 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 27 B CYS 25 1_555 B SG CYS 82 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 21 H CYS 22 1_555 C SG CYS 95 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 147 H CYS 148 1_555 C SG CYS 202 H CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8TQ9 _atom_sites.fract_transf_matrix[1][1] 0.018215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 SO4 A 1 301 2 SO4 SO4 . G 7 GOL H 1 301 1 GOL GOL . H 8 HOH A 1 401 28 HOH HOH . H 8 HOH A 2 402 43 HOH HOH . H 8 HOH A 3 403 11 HOH HOH . H 8 HOH A 4 404 12 HOH HOH . H 8 HOH A 5 405 14 HOH HOH . H 8 HOH A 6 406 1 HOH HOH . H 8 HOH A 7 407 47 HOH HOH . H 8 HOH A 8 408 27 HOH HOH . H 8 HOH A 9 409 23 HOH HOH . H 8 HOH A 10 410 26 HOH HOH . H 8 HOH A 11 411 40 HOH HOH . H 8 HOH A 12 412 52 HOH HOH . H 8 HOH A 13 413 50 HOH HOH . H 8 HOH A 14 414 34 HOH HOH . H 8 HOH A 15 415 17 HOH HOH . H 8 HOH A 16 416 32 HOH HOH . H 8 HOH A 17 417 18 HOH HOH . H 8 HOH A 18 418 3 HOH HOH . H 8 HOH A 19 419 10 HOH HOH . I 8 HOH B 1 101 57 HOH HOH . I 8 HOH B 2 102 25 HOH HOH . I 8 HOH B 3 103 7 HOH HOH . I 8 HOH B 4 104 45 HOH HOH . I 8 HOH B 5 105 5 HOH HOH . I 8 HOH B 6 106 54 HOH HOH . I 8 HOH B 7 107 16 HOH HOH . I 8 HOH B 8 108 31 HOH HOH . I 8 HOH B 9 109 2 HOH HOH . I 8 HOH B 10 110 51 HOH HOH . I 8 HOH B 11 111 37 HOH HOH . I 8 HOH B 12 112 29 HOH HOH . I 8 HOH B 13 113 41 HOH HOH . J 8 HOH H 1 401 38 HOH HOH . J 8 HOH H 2 402 44 HOH HOH . J 8 HOH H 3 403 55 HOH HOH . J 8 HOH H 4 404 9 HOH HOH . J 8 HOH H 5 405 33 HOH HOH . J 8 HOH H 6 406 6 HOH HOH . J 8 HOH H 7 407 42 HOH HOH . J 8 HOH H 8 408 20 HOH HOH . J 8 HOH H 9 409 35 HOH HOH . J 8 HOH H 10 410 8 HOH HOH . J 8 HOH H 11 411 13 HOH HOH . K 8 HOH L 1 301 36 HOH HOH . K 8 HOH L 2 302 53 HOH HOH . K 8 HOH L 3 303 21 HOH HOH . K 8 HOH L 4 304 48 HOH HOH . K 8 HOH L 5 305 58 HOH HOH . K 8 HOH L 6 306 4 HOH HOH . K 8 HOH L 7 307 19 HOH HOH . K 8 HOH L 8 308 15 HOH HOH . K 8 HOH L 9 309 49 HOH HOH . K 8 HOH L 10 310 24 HOH HOH . K 8 HOH L 11 311 56 HOH HOH . K 8 HOH L 12 312 46 HOH HOH . K 8 HOH L 13 313 39 HOH HOH . K 8 HOH L 14 314 30 HOH HOH . L 8 HOH P 1 101 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 7 31.093 76.008 44.81 1 81.6 ? C1 GOL 301 H 1 HETATM 2 O O1 GOL . . . G 7 32.043 76.093 45.825 1 81.86 ? O1 GOL 301 H 1 HETATM 3 C C2 GOL . . . G 7 29.778 76.607 45.369 1 90.16 ? C2 GOL 301 H 1 HETATM 4 O O2 GOL . . . G 7 29.941 77.915 45.809 1 81.11 ? O2 GOL 301 H 1 HETATM 5 C C3 GOL . . . G 7 28.762 76.498 44.202 1 83.77 ? C3 GOL 301 H 1 HETATM 6 O O3 GOL . . . G 7 27.552 77.013 44.67 1 81.12 ? O3 GOL 301 H 1 # _model_server_stats.io_time_ms 132 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #