data_8TQA # _model_server_result.job_id nID6oGdu3T2aSboelfuuZQ _model_server_result.datetime_utc '2024-11-22 07:35:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8tqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":304}' # _entry.id 8TQA # _exptl.entry_id 8TQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98 _cell.angle_gamma 90 _cell.entry_id 8TQA _cell.length_a 71.387 _cell.length_b 70.185 _cell.length_c 94.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8TQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 I N N ? 7 J N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N ? 7 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 101 1_555 A SG CYS 163 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf2 A SG CYS 202 A CYS 203 1_555 A SG CYS 258 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 C SG CYS 143 H CYS 143 1_555 C SG CYS 198 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf7 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8TQA _atom_sites.fract_transf_matrix[1][1] 0.014008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001969 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL A 1 301 1 GOL GOL . G 7 EDO A 1 302 2 EDO EDO . H 6 GOL A 1 303 8 GOL GOL . I 7 EDO B 1 101 6 EDO EDO . J 7 EDO B 1 102 7 EDO EDO . K 8 NAG H 1 301 301 NAG NAG . L 7 EDO H 1 302 5 EDO EDO . M 7 EDO L 1 301 3 EDO EDO . N 7 EDO L 1 302 4 EDO EDO . O 7 EDO L 1 303 9 EDO EDO . P 7 EDO L 1 304 11 EDO EDO . Q 7 EDO P 1 101 10 EDO EDO . R 9 HOH A 1 401 11 HOH HOH . R 9 HOH A 2 402 24 HOH HOH . R 9 HOH A 3 403 66 HOH HOH . R 9 HOH A 4 404 52 HOH HOH . R 9 HOH A 5 405 25 HOH HOH . R 9 HOH A 6 406 61 HOH HOH . R 9 HOH A 7 407 3 HOH HOH . R 9 HOH A 8 408 33 HOH HOH . R 9 HOH A 9 409 31 HOH HOH . R 9 HOH A 10 410 36 HOH HOH . R 9 HOH A 11 411 50 HOH HOH . R 9 HOH A 12 412 6 HOH HOH . R 9 HOH A 13 413 18 HOH HOH . R 9 HOH A 14 414 1 HOH HOH . R 9 HOH A 15 415 27 HOH HOH . R 9 HOH A 16 416 8 HOH HOH . R 9 HOH A 17 417 2 HOH HOH . R 9 HOH A 18 418 13 HOH HOH . R 9 HOH A 19 419 14 HOH HOH . R 9 HOH A 20 420 64 HOH HOH . R 9 HOH A 21 421 63 HOH HOH . R 9 HOH A 22 422 44 HOH HOH . R 9 HOH A 23 423 65 HOH HOH . R 9 HOH A 24 424 62 HOH HOH . S 9 HOH B 1 201 59 HOH HOH . S 9 HOH B 2 202 38 HOH HOH . S 9 HOH B 3 203 46 HOH HOH . T 9 HOH H 1 401 58 HOH HOH . T 9 HOH H 2 402 19 HOH HOH . T 9 HOH H 3 403 7 HOH HOH . T 9 HOH H 4 404 16 HOH HOH . T 9 HOH H 5 405 45 HOH HOH . T 9 HOH H 6 406 35 HOH HOH . T 9 HOH H 7 407 15 HOH HOH . T 9 HOH H 8 408 26 HOH HOH . T 9 HOH H 9 409 47 HOH HOH . T 9 HOH H 10 410 17 HOH HOH . T 9 HOH H 11 411 30 HOH HOH . T 9 HOH H 12 412 53 HOH HOH . T 9 HOH H 13 413 9 HOH HOH . T 9 HOH H 14 414 40 HOH HOH . T 9 HOH H 15 415 32 HOH HOH . T 9 HOH H 16 416 41 HOH HOH . T 9 HOH H 17 417 55 HOH HOH . T 9 HOH H 18 418 54 HOH HOH . T 9 HOH H 19 419 51 HOH HOH . T 9 HOH H 20 420 60 HOH HOH . T 9 HOH H 21 421 56 HOH HOH . T 9 HOH H 22 422 57 HOH HOH . U 9 HOH L 1 401 49 HOH HOH . U 9 HOH L 2 402 20 HOH HOH . U 9 HOH L 3 403 34 HOH HOH . U 9 HOH L 4 404 29 HOH HOH . U 9 HOH L 5 405 12 HOH HOH . U 9 HOH L 6 406 28 HOH HOH . U 9 HOH L 7 407 21 HOH HOH . U 9 HOH L 8 408 4 HOH HOH . U 9 HOH L 9 409 43 HOH HOH . U 9 HOH L 10 410 5 HOH HOH . U 9 HOH L 11 411 23 HOH HOH . U 9 HOH L 12 412 10 HOH HOH . U 9 HOH L 13 413 37 HOH HOH . U 9 HOH L 14 414 42 HOH HOH . U 9 HOH L 15 415 22 HOH HOH . U 9 HOH L 16 416 48 HOH HOH . U 9 HOH L 17 417 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . P 7 -18.876 9.732 -0.298 1 41.79 ? C1 EDO 304 L 1 HETATM 2 O O1 EDO . . . P 7 -18.162 8.571 0.128 1 41.19 ? O1 EDO 304 L 1 HETATM 3 C C2 EDO . . . P 7 -19.054 10.591 0.942 1 44.66 ? C2 EDO 304 L 1 HETATM 4 O O2 EDO . . . P 7 -19.631 11.883 0.641 1 44.72 ? O2 EDO 304 L 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #